Clone Sequence Records
BS16734.3prime Sequence
907 bp (819 high quality bases) assembled on 2007-05-15
> BS16734.3prime
ATGGTCTAGAAAGCTTTTACTTCCTAAAGTTCAGCAACGTGTCGGGTATT
TCATTGATGTAGTTATAGAGAGAGGGATCTACGCCATGACCGCCAAAGTC
CGCCCATTTAGTCAGATCAATTGATGGTATAATACCGCTCTTACAGGGCA
CTCGTGGGTTGATTTCATGATCCGGCAAGACCATGGGGTAGATTTGCACA
GTATCAATCAAGTCGGTGTTGTCGCAGATCAATCGGGATAGCTTCGCCTT
GCGAATCTCCTGCAGTTGCTCGGGCGTAAATGATGAGGGCTGGTTGGGCA
GCTCGTACCAAAAGCGATCTCCACGACGCAGGTAACTCATCTGGGTGGCG
ATAACACAGGCAAAAGTCGGTCCCAACATGGAACCGGGAAGTGATTTTTC
AGAGACGCCTCCAGACCAAAGATCAATATCGGCAGGGTGTTCAAAAATGC
TGCCATAGCGCAGAACAGTCTCGTTGGGCATGGATCCGTACATCTCATCC
CAGGTGTTTGAGGTGGGCAGACCGCAGAATTTTCGGAACTCCATGTAACC
GGGAATACCAAACTCCCGACCGCGCTGCATATTAAACGACACCAGATCCA
TTCCAAACCGGGCGCCCTCCTTCTTGAACAGATGATTGGTGACCTCCTGG
GTTATCGAGTCGTCCATTGCCTGGGCCACTTGGTTCATCAGACCCATGAA
ATATTCATCCAGCACTCCTGCACGGTACAGATCATAGGGTCTCCTGATCA
AATCCGACAGACGTTTCGAGGCAATAAACTTGTGGGCCTTGGACCAGCGT
TCCACGGCAGTTGGCAACAGAGAGTGGCCAAATCGGAAGGCAGCTCCAGC
AAAAGAGTCAATAATGCCCGGATTCACTGTTGAATCATAACCATCCCAGT
AGCCATC
BS16734.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:16:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5873-PA | 2262 | CG5873-RA | 1372..2262 | 907..17 | 4455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:36:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5873-RA | 3081 | CG5873-RA | 1814..2705 | 907..16 | 4460 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:36:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17445047..17445513 | 907..441 | 2335 | 100 | Minus |
3R | 32079331 | 3R | 17445569..17445847 | 440..162 | 1395 | 100 | Minus |
3R | 32079331 | 3R | 17445911..17446007 | 161..65 | 485 | 100 | Minus |
3R | 32079331 | 3R | 17446075..17446123 | 64..16 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:36:43 has no hits.
BS16734.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:16:08 Download gff for
BS16734.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5873-PA | 1372..2262 | 17..907 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:44:39 Download gff for
BS16734.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5873-RA | 1814..2708 | 13..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:40:47 Download gff for
BS16734.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5873-RA | 1814..2708 | 13..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:40:47 Download gff for
BS16734.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17445047..17445513 | 441..907 | 100 | -> | Minus |
3R | 17445569..17445847 | 162..440 | 100 | -> | Minus |
3R | 17445911..17446007 | 65..161 | 100 | -> | Minus |
3R | 17446075..17446126 | 13..64 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:44:39 Download gff for
BS16734.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13270769..13271235 | 441..907 | 100 | -> | Minus |
arm_3R | 13271291..13271569 | 162..440 | 100 | -> | Minus |
arm_3R | 13271633..13271729 | 65..161 | 100 | -> | Minus |
arm_3R | 13271797..13271848 | 13..64 | 98 | | Minus |
BS16734.5prime Sequence
897 bp (835 high quality bases) assembled on 2007-05-15
> BS16734.5prime
GAAGTTATCAGTCGACATGATCTTAAGAATACTTCTACTGTCACTGGCGG
CGGTGGCGCACGCGCAGTACCATCAGTTTGGTGAGCAACTCCAGACGGCC
CACGGATCCGACTGTGCACTTCTGTTGGCCGGACCCGGTCGCTCCTCCGT
CTACGACTACAATGTGAATCTATTTCGCGGCACTTTAAACCCGTACAACA
ATGGACCGGGCACTTGCATCACCTACGATGCCATCAATGCGGCCTACTTG
GATGCACGCAAGCGTATTCATGTGGCGCAGCCAAAGTCTGACTGGAAGCC
GGAGGAACTGGCCACCGTGGGCGAGCTGCTGCTCGACATTTCCATTCAAT
TGGCCCGAACATATGGCTTATCGTATGAAGAAATCGAAAAAGGATTACCT
ACGATTGATACCTCAAAGACGCTGATTCGTGAGGTGTGTCCACCCTTCTT
CGCTGGAGTTGAGTGTCGCCCTGGAAAATATCGCCGTTTCGATGGCCTTT
GCAACAACATCGAGCACCCGACATGGGGGGCAGCTAATGCTCCGTTCCAG
CGCCTGATCGGTCCACTTTACTCGGACGGAATCAATGCTCCCAGAATTTC
GGTGACTGGTCGGGATTTGCCCTTCTCTCGAGTGGTTTCACGCACCATGC
ATCCCGACGACGGTTTCCACGATCACGCGGGCACCGTTATGGTCATCGCC
TGGGGTCAGTTCATGGATCACGACTTCACGCTGACGGGAACGCCGTTGGA
TCCCATTAACCGTAACGATCCCGAGGAGTGCTGCAAGCGACCATTGCATC
TAAAGCATCCGTACTGCAATGAGATTCGCATTCCCGATGACGATTACTTC
TATCGCCTGTTTTATGTCAAGTGCATTGACTTCGTGCGTGGATTCCC
BS16734.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:10:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5873-PA | 2262 | CG5873-RA | 1..881 | 17..897 | 4380 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:32:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5873-RA | 3081 | CG5873-RA | 443..1323 | 17..897 | 4390 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:32:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17443744..17444132 | 361..749 | 1945 | 100 | Plus |
3R | 32079331 | 3R | 17435904..17436064 | 26..186 | 805 | 100 | Plus |
3R | 32079331 | 3R | 17444309..17444457 | 749..897 | 730 | 99.3 | Plus |
3R | 32079331 | 3R | 17441289..17441379 | 270..360 | 455 | 100 | Plus |
3R | 32079331 | 3R | 17440931..17441013 | 187..269 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:32:51 has no hits.
BS16734.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:10:51 Download gff for
BS16734.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5873-PA | 1..881 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:50:38 Download gff for
BS16734.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5873-RA | 435..1323 | 8..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:50:01 Download gff for
BS16734.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5873-RA | 435..1323 | 8..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:50:01 Download gff for
BS16734.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17435906..17436064 | 28..186 | 100 | -> | Plus |
3R | 17440931..17441013 | 187..269 | 100 | -> | Plus |
3R | 17441289..17441379 | 270..360 | 100 | -> | Plus |
3R | 17443744..17444132 | 361..749 | 100 | -> | Plus |
3R | 17444310..17444457 | 750..897 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:50:38 Download gff for
BS16734.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13261628..13261786 | 28..186 | 100 | -> | Plus |
arm_3R | 13266653..13266735 | 187..269 | 100 | -> | Plus |
arm_3R | 13267011..13267101 | 270..360 | 100 | -> | Plus |
arm_3R | 13269466..13269854 | 361..749 | 100 | -> | Plus |
arm_3R | 13270032..13270179 | 750..897 | 99 | | Plus |
BS16734.complete Sequence
2294 bp assembled on 2009-08-24
GenBank Submission: KX801730
> BS16734.complete
GAAGTTATCAGTCGACATGATCTTAAGAATACTTCTACTGTCACTGGCGG
CGGTGGCGCACGCGCAGTACCATCAGTTTGGTGAGCAACTCCAGACGGCC
CACGGATCCGACTGTGCACTTCTGTTGGCCGGACCCGGTCGCTCCTCCGT
CTACGACTACAATGTGAATCTATTTCGCGGCACTTTAAACCCGTACAACA
ATGGACCGGGCACTTGCATCACCTACGATGCCATCAATGCGGCCTACTTG
GATGCACGCAAGCGTATTCATGTGGCGCAGCCAAAGTCTGACTGGAAGCC
GGAGGAACTGGCCACCGTGGGCGAGCTGCTGCTCGACATTTCCATTCAAT
TGGCCCGAACATATGGCTTATCGTATGAAGAAATCGAAAAAGGATTACCT
ACGATTGATACCTCAAAGACGCTGATTCGTGAGGTGTGTCCACCCTTCTT
CGCTGGAGTTGAGTGTCGCCCTGGAAAATATCGCCGTTTCGATGGCCTTT
GCAACAACATCGAGCACCCGACATGGGGGGCAGCTAATGCTCCGTTCCAG
CGCCTGATCGGTCCACTTTACTCGGACGGAATCAATGCTCCCAGAATTTC
GGTGACTGGTCGGGATTTGCCCTTCTCTCGAGTGGTTTCACGCACCATGC
ATCCCGACGACGGTTTCCACGATCACGCGGGCACCGTTATGGTCATCGCC
TGGGGTCAGTTCATGGATCACGACTTCACGCTGACGGGAACGCCGTTGGA
TCCCATTAACCGTAACGATCCCGAGGAGTGCTGCAAGCGACCATTGCATC
TAAAGCATCCGTACTGCAATGAGATTCGCATTCCCGATGACGATTACTTC
TATCGCCTGTTTAATGTCAAGTGCATTGACTTCGTGCGTGGATTCCCCTC
TCCTCGTCCAGGCTGCAAATTAGGCTCCCGTCAGCAGTTCAACACCTTGA
CTGGTGTCATCGATGCGAACACCGTTTACGGAGTGAAGGAGTCGTTTGCC
CGCAAGCTAAGAACTGGCTACGGAGGTCTGATGCGCATGAATCCCGTGTT
CCAGGAGTACGGCCTGAAGGACCTGCTTCCCCTGAAGCTGGATATCCCCG
ACGAGGGATGCACGCGTCCCAACAAGAGCATGTACTGTTTCGAGGGCGGT
GAGATTCGCGTGAATGAGCAGCTGGTGCTCACGTGCATGCACACCTTGAT
GGCGCGAGAGCACAATCGACTGGCGACTGCATTGGCGCAGATTAACAAAC
ACTGGGATGATGAGACGCTGTTCCAGGAGGCCAGACGCATCAATATCGCC
ATAGTTCAGCATGTCACCTTCAACGAATTTCTGCCCATTCTGCTGGGCAA
GGAAGTGATGGAGAAGTTCGGTTTGGTGCTCCAGAAAGATGGCTACTGGG
ATGGTTATGATTCAACAGTGAATCCGGGCATTATTGACTCTTTTGCTGGA
GCTGCCTTCCGATTTGGCCACTCTCTGTTGCCAACTGCCGTGGAACGCTG
GTCCAAGGCCCACAAGTTTATTGCCTCGAAACGTCTGTCGGATTTGATCA
GGAGACCCTATGATCTGTACCGTGCAGGAGTGCTGGATGAATATTTCATG
GGTCTGATGAACCAAGTGGCCCAGGCAATGGACGACTCGATAACCCAGGA
GGTCACCAATCATCTGTTCAAGAAGGAGGGCGCCCGGTTTGGAATGGATC
TGGTGTCGTTTAATATGCAGCGCGGTCGGGAGTTTGGTATTCCCGGTTAC
ATGGAGTTCCGAAAATTCTGCGGTCTGCCCACCTCAAACACCTGGGATGA
GATGTACGGATCCATGCCCAACGAGACTGTTCTGCGCTATGGCAGCATTT
TTGAACACCCTGCCGATATTGATCTTTGGTCTGGAGGCGTCTCTGAAAAA
TCACTTCCCGGTTCCATGTTGGGACCGACTTTTGCCTGTGTTATCGCCAC
CCAGATGAGTTACCTGCGTCGTGGAGATCGCTTTTGGTACGAGCTGCCCA
ACCAGCCCTCATCATTTACGCCCGAGCAACTGCAGGAGATTCGCAAGGCG
AAGCTATCCCGATTGATCTGCGACAACACCGACTTGATTGATACTGTGCA
AATCTACCCCATGGTCTTGCCGGATCATGAAATCAACCCACGAGTGCCCT
GTAAGAGCGGTATTATACCATCAATTGATCTGACTAAATGGGCGGACTTT
GGCGGTCATGGCGTAGATCCCTCTCTCTATAACTACATCAATGAAATACC
CGACACGTTGCTGAACTTTAGGAAGTAAAAGCTTTCTAGACCAT
BS16734.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:28:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5873-RA | 2262 | CG5873-PA | 1..2262 | 17..2278 | 11310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5873-RA | 3081 | CG5873-RA | 443..2705 | 17..2279 | 11315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17444581..17445513 | 922..1854 | 4665 | 100 | Plus |
3R | 32079331 | 3R | 17443744..17444132 | 361..749 | 1945 | 100 | Plus |
3R | 32079331 | 3R | 17445569..17445847 | 1855..2133 | 1395 | 100 | Plus |
3R | 32079331 | 3R | 17444309..17444484 | 749..924 | 880 | 100 | Plus |
3R | 32079331 | 3R | 17435904..17436064 | 26..186 | 805 | 100 | Plus |
3R | 32079331 | 3R | 17445911..17446007 | 2134..2230 | 485 | 100 | Plus |
3R | 32079331 | 3R | 17441289..17441379 | 270..360 | 455 | 100 | Plus |
3R | 32079331 | 3R | 17440931..17441013 | 187..269 | 415 | 100 | Plus |
3R | 32079331 | 3R | 17446075..17446123 | 2231..2279 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:28:22 has no hits.
BS16734.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:45 Download gff for
BS16734.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5873-RA | 439..2698 | 17..2276 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:37 Download gff for
BS16734.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5873-RA | 443..2702 | 17..2276 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:21 Download gff for
BS16734.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5873-RA | 443..2702 | 17..2276 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:21 Download gff for
BS16734.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17444310..17444483 | 750..923 | 100 | -> | Plus |
3R | 17435896..17436064 | 20..186 | 98 | -> | Plus |
3R | 17440931..17441013 | 187..269 | 100 | -> | Plus |
3R | 17441289..17441379 | 270..360 | 100 | -> | Plus |
3R | 17443744..17444132 | 361..749 | 100 | -> | Plus |
3R | 17444583..17445513 | 924..1854 | 100 | -> | Plus |
3R | 17445569..17445847 | 1855..2133 | 100 | -> | Plus |
3R | 17445911..17446007 | 2134..2230 | 100 | -> | Plus |
3R | 17446075..17446120 | 2231..2276 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:37 Download gff for
BS16734.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13271291..13271569 | 1855..2133 | 100 | -> | Plus |
arm_3R | 13271633..13271729 | 2134..2230 | 100 | -> | Plus |
arm_3R | 13261618..13261786 | 20..186 | 98 | -> | Plus |
arm_3R | 13266653..13266735 | 187..269 | 100 | -> | Plus |
arm_3R | 13267011..13267101 | 270..360 | 100 | -> | Plus |
arm_3R | 13269466..13269854 | 361..749 | 100 | -> | Plus |
arm_3R | 13270032..13270205 | 750..923 | 100 | -> | Plus |
arm_3R | 13270305..13271235 | 924..1854 | 100 | -> | Plus |
arm_3R | 13271797..13271842 | 2231..2276 | 100 | | Plus |
BS16734.pep Sequence
Translation from 16 to 2277
> BS16734.pep
MILRILLLSLAAVAHAQYHQFGEQLQTAHGSDCALLLAGPGRSSVYDYNV
NLFRGTLNPYNNGPGTCITYDAINAAYLDARKRIHVAQPKSDWKPEELAT
VGELLLDISIQLARTYGLSYEEIEKGLPTIDTSKTLIREVCPPFFAGVEC
RPGKYRRFDGLCNNIEHPTWGAANAPFQRLIGPLYSDGINAPRISVTGRD
LPFSRVVSRTMHPDDGFHDHAGTVMVIAWGQFMDHDFTLTGTPLDPINRN
DPEECCKRPLHLKHPYCNEIRIPDDDYFYRLFNVKCIDFVRGFPSPRPGC
KLGSRQQFNTLTGVIDANTVYGVKESFARKLRTGYGGLMRMNPVFQEYGL
KDLLPLKLDIPDEGCTRPNKSMYCFEGGEIRVNEQLVLTCMHTLMAREHN
RLATALAQINKHWDDETLFQEARRINIAIVQHVTFNEFLPILLGKEVMEK
FGLVLQKDGYWDGYDSTVNPGIIDSFAGAAFRFGHSLLPTAVERWSKAHK
FIASKRLSDLIRRPYDLYRAGVLDEYFMGLMNQVAQAMDDSITQEVTNHL
FKKEGARFGMDLVSFNMQRGREFGIPGYMEFRKFCGLPTSNTWDEMYGSM
PNETVLRYGSIFEHPADIDLWSGGVSEKSLPGSMLGPTFACVIATQMSYL
RRGDRFWYELPNQPSSFTPEQLQEIRKAKLSRLICDNTDLIDTVQIYPMV
LPDHEINPRVPCKSGIIPSIDLTKWADFGGHGVDPSLYNYINEIPDTLLN
FRK*
BS16734.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:57:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5873-PA | 753 | CG5873-PA | 1..753 | 1..753 | 4055 | 100 | Plus |
CG42331-PD | 1615 | CG42331-PD | 117..735 | 89..727 | 1024 | 37 | Plus |
CG42331-PB | 1615 | CG13632-PA | 117..735 | 89..727 | 1024 | 37 | Plus |
cd-PA | 830 | CG6969-PA | 217..776 | 154..713 | 1014 | 40.4 | Plus |
CG42331-PC | 1439 | CG6879-PA | 6..559 | 154..727 | 1010 | 39.2 | Plus |