Clone BS16737 Report

Search the DGRC for BS16737

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:167
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptRpL10-RC
Protein status:BS16737.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16737.3prime Sequence

687 bp (687 high quality bases) assembled on 2007-05-15

> BS16737.3prime
ATGGTCTAGAAAGCTTTTAAGCATAAACATCACGCTGAGCTTTTTCCCAT
GCGGCAATCGGGCCATGCTCTGGGCGGTATTTCACATTGCAACCATCAGG
CTCAAGGCGGTTGTCATCGCGAAGTTCTTCATAACGCTCACGTTCGTATT
TGGTGAATCCCCACTTCTTTGAAACATAGATCTTTTGACGTCCAGGGAAC
TTAAACTTAGCACGCCGCAAAGCTTCAATAACTTGAGCCTTGTAACGATC
GCTAGAGCGGACAGACATAATGGGTTGACCAATACGAACTCGAGCAACCG
TGCCCTGCGGTTTTCCAAACGCTCCTCGCATTCCAGTTTGAAGCCTATCA
GCTCCAGCGCACGACAACATTTTGTTGATGCGAATGACGTGGAATGGATG
CAGGCGCATTCTGATGTGGAACTGGTCCTTACCGCAGTACTTCACCAAGT
ACTTGTTGCAACAAATGCGTCCAGCTTCCAAAGCTTCACTACTCAGCTGT
TCGTATTCATCAGAAACCAAATGAACACACAGGGGAAAATCCTCAACTGT
AGCTTTTTTTCTTCCCAAATCAAATATACGAATTTTTGGATCAGGGACAC
CACGGCAAAACCGAGATTTAGGGTACGGCTTATTTTTGCAATAGCGGTAG
CATCTAGCTGGTCGTCGGCCCATGTCGACTGATAACT

BS16737.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:13:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG17521-PA 696 Qm-RA 33..696 680..17 3295 99.8 Minus
CG17521-PB 714 Qm-RB 51..714 680..17 3295 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
RpL10-RE 1224 CG17521-RE 37..700 680..17 3305 99.8 Minus
RpL10-RD 789 CG17521-RD 48..711 680..17 3305 99.8 Minus
RpL10-RC 778 CG17521-RC 37..700 680..17 3305 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:35:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 23094905..23095212 344..651 1540 100 Plus
3L 28110227 3L 23093714..23093880 17..183 835 100 Plus
3L 28110227 3L 23094684..23094849 182..347 830 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:35:19 has no hits.

BS16737.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:13:37 Download gff for BS16737.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17521-PB 42..714 17..687 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:44:18 Download gff for BS16737.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL10-RC 32..700 17..687 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:37:14 Download gff for BS16737.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL10-RC 32..700 17..687 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:37:14 Download gff for BS16737.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 23093714..23093878 17..181 100 <- Plus
3L 23094684..23094846 182..344 100 <- Plus
3L 23094906..23095211 345..650 100 <- Plus
3L 23095275..23095304 651..680 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:44:18 Download gff for BS16737.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 23086814..23086978 17..181 100 <- Plus
arm_3L 23087784..23087946 182..344 100 <- Plus
arm_3L 23088006..23088311 345..650 100 <- Plus
arm_3L 23088375..23088404 651..680 96   Plus

BS16737.5prime Sequence

687 bp (687 high quality bases) assembled on 2007-05-15

> BS16737.5prime
GAAGTTATCAGTCGACATGGGCCGACGACCAGCTAGATGCTACCGCTATT
GCAAAAATAAGCCGTACCCTAAATCTCGGTTTTGCCGTGGTGTCCCTGAT
CCAAAAATTCGTATATTTGATTTGGGAAGAAAAAAAGCTACAGTTGAGGA
TTTTCCCCTGTGTGTTCATTTGGTTTCTGATGAATACGAACAGCTGAGTA
GTGAAGCTTTGGAAGCTGGACGCATTTGTTGCAACAAGTACTTGGTGAAG
TACTGCGGTAAGGACCAGTTCCACATCAGAATGCGCCTGCATCCATTCCA
CGTCATTCGCATCAACAAAATGTTGTCGTGCGCTGGAGCTGATAGGCTTC
AAACTGGAATGCGAGGAGCGTTTGGAAAACCGCAGGGCACGGTTGCTCGA
GTTCGTATTGGTCAACCCATTATGTCTGTCCGCTCTAGCGATCGTTACAA
GGCTCAAGTTATTGAAGCTTTGCGGCGTGCTAAGTTTAAGTTCCCTGGAC
GTCAAAAGATCTATGTTTCAAAGAAGTGGGGATTCACCAAATACGAACGT
GAGCGTTATGAAGAACTTCGCGATGACAACCGCCTTGAGCCTGATGGTTG
CAATGTGAAATACCGCCCAGAGCATGGCCCGATTGCCGCATGGGAAAAAG
CTCAGCGTGATGTTTATGCTTAAAAGCTTTCTAGACC

BS16737.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:08:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG17521-PA 696 Qm-RA 33..696 10..673 3295 99.8 Plus
CG17521-PB 714 Qm-RB 51..714 10..673 3295 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
RpL10-RE 1224 CG17521-RE 37..700 10..673 3305 99.8 Plus
RpL10-RD 789 CG17521-RD 48..711 10..673 3305 99.8 Plus
RpL10-RC 778 CG17521-RC 37..700 10..673 3305 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 23094905..23095212 346..39 1540 100 Minus
3L 28110227 3L 23093714..23093880 673..507 835 100 Minus
3L 28110227 3L 23094684..23094849 508..343 830 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:51:42 has no hits.

BS16737.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:08:43 Download gff for BS16737.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17521-PB 42..714 3..673 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:31:01 Download gff for BS16737.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL10-RC 30..700 1..673 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:06:02 Download gff for BS16737.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL10-RC 30..700 1..673 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:06:02 Download gff for BS16737.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 23094684..23094846 346..508 100 <- Minus
3L 23095275..23095304 10..39 96   Minus
3L 23094906..23095211 40..345 100 <- Minus
3L 23093714..23093878 509..673 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:31:01 Download gff for BS16737.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 23086814..23086978 509..673 100 <- Minus
arm_3L 23087784..23087946 346..508 100 <- Minus
arm_3L 23088006..23088311 40..345 100 <- Minus
arm_3L 23088375..23088404 10..39 96   Minus

BS16737.complete Sequence

689 bp assembled on 2007-05-07

GenBank Submission: FJ638185

> BS16737.complete
GAAGTTATCAGTCGACATGGGCCGACGACCAGCTAGATGCTACCGCTATT
GCAAAAATAAGCCGTACCCTAAATCTCGGTTTTGCCGTGGTGTCCCTGAT
CCAAAAATTCGTATATTTGATTTGGGAAGAAAAAAAGCTACAGTTGAGGA
TTTTCCCCTGTGTGTTCATTTGGTTTCTGATGAATACGAACAGCTGAGTA
GTGAAGCTTTGGAAGCTGGACGCATTTGTTGCAACAAGTACTTGGTGAAG
TACTGCGGTAAGGACCAGTTCCACATCAGAATGCGCCTGCATCCATTCCA
CGTCATTCGCATCAACAAAATGTTGTCGTGCGCTGGAGCTGATAGGCTTC
AAACTGGAATGCGAGGAGCGTTTGGAAAACCGCAGGGCACGGTTGCTCGA
GTTCGTATTGGTCAACCCATTATGTCTGTCCGCTCTAGCGATCGTTACAA
GGCTCAAGTTATTGAAGCTTTGCGGCGTGCTAAGTTTAAGTTCCCTGGAC
GTCAAAAGATCTATGTTTCAAAGAAGTGGGGATTCACCAAATACGAACGT
GAGCGTTATGAAGAACTTCGCGATGACAACCGCCTTGAGCCTGATGGTTG
CAATGTGAAATACCGCCCAGAGCATGGCCCGATTGCCGCATGGGAAAAAG
CTCAGCGTGATGTTTATGCTTAAAAGCTTTCTAGACCAT

BS16737.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
RpL10-RE 657 CG17521-PE 1..657 17..673 3285 100 Plus
RpL10-RD 657 CG17521-PD 1..657 17..673 3285 100 Plus
RpL10-RC 657 CG17521-PC 1..657 17..673 3285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:37
Subject Length Description Subject Range Query Range Score Percent Strand
RpL10-RE 1224 CG17521-RE 37..700 10..673 3305 99.8 Plus
RpL10-RD 789 CG17521-RD 48..711 10..673 3305 99.8 Plus
RpL10-RC 778 CG17521-RC 37..700 10..673 3305 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 23094905..23095212 346..39 1540 100 Minus
3L 28110227 3L 23093714..23093880 673..507 835 100 Minus
3L 28110227 3L 23094684..23094849 508..343 830 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:37:35 has no hits.

BS16737.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:38 Download gff for BS16737.complete
Subject Subject Range Query Range Percent Splice Strand
Qm-RD 1..657 17..673 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:32 Download gff for BS16737.complete
Subject Subject Range Query Range Percent Splice Strand
Qm-RD 35..707 3..673 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:15 Download gff for BS16737.complete
Subject Subject Range Query Range Percent Splice Strand
RpL10-RC 44..698 17..671 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:38 Download gff for BS16737.complete
Subject Subject Range Query Range Percent Splice Strand
Qm-RD 35..707 3..673 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:20 Download gff for BS16737.complete
Subject Subject Range Query Range Percent Splice Strand
RpL10-RC 44..698 17..671 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:20 Download gff for BS16737.complete
Subject Subject Range Query Range Percent Splice Strand
3L 23095275..23095297 17..39 100   Minus
3L 23093716..23093878 509..671 100 <- Minus
3L 23094684..23094846 346..508 100 <- Minus
3L 23094906..23095211 40..345 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:15 Download gff for BS16737.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 23086816..23086978 509..671 100 <- Minus
arm_3L 23087784..23087946 346..508 100 <- Minus
arm_3L 23088006..23088311 40..345 100 <- Minus
arm_3L 23088375..23088397 17..39 100   Minus

BS16737.pep Sequence

Translation from 16 to 672

> BS16737.pep
MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCV
HLVSDEYEQLSSEALEAGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRIN
KMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRYKAQVIE
ALRRAKFKFPGRQKIYVSKKWGFTKYERERYEELRDDNRLEPDGCNVKYR
PEHGPIAAWEKAQRDVYA*

BS16737.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
RpL10-PE 218 CG17521-PE 1..218 1..218 1183 100 Plus
RpL10-PD 218 CG17521-PD 1..218 1..218 1183 100 Plus
RpL10-PC 218 CG17521-PC 1..218 1..218 1183 100 Plus