Clone Sequence Records
BS16737.3prime Sequence
687 bp (687 high quality bases) assembled on 2007-05-15
> BS16737.3prime
ATGGTCTAGAAAGCTTTTAAGCATAAACATCACGCTGAGCTTTTTCCCAT
GCGGCAATCGGGCCATGCTCTGGGCGGTATTTCACATTGCAACCATCAGG
CTCAAGGCGGTTGTCATCGCGAAGTTCTTCATAACGCTCACGTTCGTATT
TGGTGAATCCCCACTTCTTTGAAACATAGATCTTTTGACGTCCAGGGAAC
TTAAACTTAGCACGCCGCAAAGCTTCAATAACTTGAGCCTTGTAACGATC
GCTAGAGCGGACAGACATAATGGGTTGACCAATACGAACTCGAGCAACCG
TGCCCTGCGGTTTTCCAAACGCTCCTCGCATTCCAGTTTGAAGCCTATCA
GCTCCAGCGCACGACAACATTTTGTTGATGCGAATGACGTGGAATGGATG
CAGGCGCATTCTGATGTGGAACTGGTCCTTACCGCAGTACTTCACCAAGT
ACTTGTTGCAACAAATGCGTCCAGCTTCCAAAGCTTCACTACTCAGCTGT
TCGTATTCATCAGAAACCAAATGAACACACAGGGGAAAATCCTCAACTGT
AGCTTTTTTTCTTCCCAAATCAAATATACGAATTTTTGGATCAGGGACAC
CACGGCAAAACCGAGATTTAGGGTACGGCTTATTTTTGCAATAGCGGTAG
CATCTAGCTGGTCGTCGGCCCATGTCGACTGATAACT
BS16737.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:13:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17521-PA | 696 | Qm-RA | 33..696 | 680..17 | 3295 | 99.8 | Minus |
CG17521-PB | 714 | Qm-RB | 51..714 | 680..17 | 3295 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:35:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL10-RE | 1224 | CG17521-RE | 37..700 | 680..17 | 3305 | 99.8 | Minus |
RpL10-RD | 789 | CG17521-RD | 48..711 | 680..17 | 3305 | 99.8 | Minus |
RpL10-RC | 778 | CG17521-RC | 37..700 | 680..17 | 3305 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:35:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 23094905..23095212 | 344..651 | 1540 | 100 | Plus |
3L | 28110227 | 3L | 23093714..23093880 | 17..183 | 835 | 100 | Plus |
3L | 28110227 | 3L | 23094684..23094849 | 182..347 | 830 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:35:19 has no hits.
BS16737.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:13:37 Download gff for
BS16737.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17521-PB | 42..714 | 17..687 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:44:18 Download gff for
BS16737.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10-RC | 32..700 | 17..687 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:37:14 Download gff for
BS16737.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10-RC | 32..700 | 17..687 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:37:14 Download gff for
BS16737.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 23093714..23093878 | 17..181 | 100 | <- | Plus |
3L | 23094684..23094846 | 182..344 | 100 | <- | Plus |
3L | 23094906..23095211 | 345..650 | 100 | <- | Plus |
3L | 23095275..23095304 | 651..680 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:44:18 Download gff for
BS16737.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 23086814..23086978 | 17..181 | 100 | <- | Plus |
arm_3L | 23087784..23087946 | 182..344 | 100 | <- | Plus |
arm_3L | 23088006..23088311 | 345..650 | 100 | <- | Plus |
arm_3L | 23088375..23088404 | 651..680 | 96 | | Plus |
BS16737.5prime Sequence
687 bp (687 high quality bases) assembled on 2007-05-15
> BS16737.5prime
GAAGTTATCAGTCGACATGGGCCGACGACCAGCTAGATGCTACCGCTATT
GCAAAAATAAGCCGTACCCTAAATCTCGGTTTTGCCGTGGTGTCCCTGAT
CCAAAAATTCGTATATTTGATTTGGGAAGAAAAAAAGCTACAGTTGAGGA
TTTTCCCCTGTGTGTTCATTTGGTTTCTGATGAATACGAACAGCTGAGTA
GTGAAGCTTTGGAAGCTGGACGCATTTGTTGCAACAAGTACTTGGTGAAG
TACTGCGGTAAGGACCAGTTCCACATCAGAATGCGCCTGCATCCATTCCA
CGTCATTCGCATCAACAAAATGTTGTCGTGCGCTGGAGCTGATAGGCTTC
AAACTGGAATGCGAGGAGCGTTTGGAAAACCGCAGGGCACGGTTGCTCGA
GTTCGTATTGGTCAACCCATTATGTCTGTCCGCTCTAGCGATCGTTACAA
GGCTCAAGTTATTGAAGCTTTGCGGCGTGCTAAGTTTAAGTTCCCTGGAC
GTCAAAAGATCTATGTTTCAAAGAAGTGGGGATTCACCAAATACGAACGT
GAGCGTTATGAAGAACTTCGCGATGACAACCGCCTTGAGCCTGATGGTTG
CAATGTGAAATACCGCCCAGAGCATGGCCCGATTGCCGCATGGGAAAAAG
CTCAGCGTGATGTTTATGCTTAAAAGCTTTCTAGACC
BS16737.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:08:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17521-PA | 696 | Qm-RA | 33..696 | 10..673 | 3295 | 99.8 | Plus |
CG17521-PB | 714 | Qm-RB | 51..714 | 10..673 | 3295 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:51:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL10-RE | 1224 | CG17521-RE | 37..700 | 10..673 | 3305 | 99.8 | Plus |
RpL10-RD | 789 | CG17521-RD | 48..711 | 10..673 | 3305 | 99.8 | Plus |
RpL10-RC | 778 | CG17521-RC | 37..700 | 10..673 | 3305 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:51:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 23094905..23095212 | 346..39 | 1540 | 100 | Minus |
3L | 28110227 | 3L | 23093714..23093880 | 673..507 | 835 | 100 | Minus |
3L | 28110227 | 3L | 23094684..23094849 | 508..343 | 830 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:51:42 has no hits.
BS16737.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:08:43 Download gff for
BS16737.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17521-PB | 42..714 | 3..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:31:01 Download gff for
BS16737.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10-RC | 30..700 | 1..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:06:02 Download gff for
BS16737.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10-RC | 30..700 | 1..673 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:06:02 Download gff for
BS16737.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 23094684..23094846 | 346..508 | 100 | <- | Minus |
3L | 23095275..23095304 | 10..39 | 96 | | Minus |
3L | 23094906..23095211 | 40..345 | 100 | <- | Minus |
3L | 23093714..23093878 | 509..673 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:31:01 Download gff for
BS16737.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 23086814..23086978 | 509..673 | 100 | <- | Minus |
arm_3L | 23087784..23087946 | 346..508 | 100 | <- | Minus |
arm_3L | 23088006..23088311 | 40..345 | 100 | <- | Minus |
arm_3L | 23088375..23088404 | 10..39 | 96 | | Minus |
BS16737.complete Sequence
689 bp assembled on 2007-05-07
GenBank Submission: FJ638185
> BS16737.complete
GAAGTTATCAGTCGACATGGGCCGACGACCAGCTAGATGCTACCGCTATT
GCAAAAATAAGCCGTACCCTAAATCTCGGTTTTGCCGTGGTGTCCCTGAT
CCAAAAATTCGTATATTTGATTTGGGAAGAAAAAAAGCTACAGTTGAGGA
TTTTCCCCTGTGTGTTCATTTGGTTTCTGATGAATACGAACAGCTGAGTA
GTGAAGCTTTGGAAGCTGGACGCATTTGTTGCAACAAGTACTTGGTGAAG
TACTGCGGTAAGGACCAGTTCCACATCAGAATGCGCCTGCATCCATTCCA
CGTCATTCGCATCAACAAAATGTTGTCGTGCGCTGGAGCTGATAGGCTTC
AAACTGGAATGCGAGGAGCGTTTGGAAAACCGCAGGGCACGGTTGCTCGA
GTTCGTATTGGTCAACCCATTATGTCTGTCCGCTCTAGCGATCGTTACAA
GGCTCAAGTTATTGAAGCTTTGCGGCGTGCTAAGTTTAAGTTCCCTGGAC
GTCAAAAGATCTATGTTTCAAAGAAGTGGGGATTCACCAAATACGAACGT
GAGCGTTATGAAGAACTTCGCGATGACAACCGCCTTGAGCCTGATGGTTG
CAATGTGAAATACCGCCCAGAGCATGGCCCGATTGCCGCATGGGAAAAAG
CTCAGCGTGATGTTTATGCTTAAAAGCTTTCTAGACCAT
BS16737.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL10-RE | 657 | CG17521-PE | 1..657 | 17..673 | 3285 | 100 | Plus |
RpL10-RD | 657 | CG17521-PD | 1..657 | 17..673 | 3285 | 100 | Plus |
RpL10-RC | 657 | CG17521-PC | 1..657 | 17..673 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL10-RE | 1224 | CG17521-RE | 37..700 | 10..673 | 3305 | 99.8 | Plus |
RpL10-RD | 789 | CG17521-RD | 48..711 | 10..673 | 3305 | 99.8 | Plus |
RpL10-RC | 778 | CG17521-RC | 37..700 | 10..673 | 3305 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:37:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 23094905..23095212 | 346..39 | 1540 | 100 | Minus |
3L | 28110227 | 3L | 23093714..23093880 | 673..507 | 835 | 100 | Minus |
3L | 28110227 | 3L | 23094684..23094849 | 508..343 | 830 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:37:35 has no hits.
BS16737.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:38 Download gff for
BS16737.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Qm-RD | 1..657 | 17..673 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:32 Download gff for
BS16737.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Qm-RD | 35..707 | 3..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:15 Download gff for
BS16737.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10-RC | 44..698 | 17..671 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:38 Download gff for
BS16737.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Qm-RD | 35..707 | 3..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:20 Download gff for
BS16737.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10-RC | 44..698 | 17..671 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:20 Download gff for
BS16737.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 23095275..23095297 | 17..39 | 100 | | Minus |
3L | 23093716..23093878 | 509..671 | 100 | <- | Minus |
3L | 23094684..23094846 | 346..508 | 100 | <- | Minus |
3L | 23094906..23095211 | 40..345 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:15 Download gff for
BS16737.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 23086816..23086978 | 509..671 | 100 | <- | Minus |
arm_3L | 23087784..23087946 | 346..508 | 100 | <- | Minus |
arm_3L | 23088006..23088311 | 40..345 | 100 | <- | Minus |
arm_3L | 23088375..23088397 | 17..39 | 100 | | Minus |
BS16737.pep Sequence
Translation from 16 to 672
> BS16737.pep
MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCV
HLVSDEYEQLSSEALEAGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRIN
KMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRYKAQVIE
ALRRAKFKFPGRQKIYVSKKWGFTKYERERYEELRDDNRLEPDGCNVKYR
PEHGPIAAWEKAQRDVYA*
BS16737.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL10-PE | 218 | CG17521-PE | 1..218 | 1..218 | 1183 | 100 | Plus |
RpL10-PD | 218 | CG17521-PD | 1..218 | 1..218 | 1183 | 100 | Plus |
RpL10-PC | 218 | CG17521-PC | 1..218 | 1..218 | 1183 | 100 | Plus |