Clone BS16738 Report

Search the DGRC for BS16738

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:167
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG42540-RB
Protein status:BS16738.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16738.3prime Sequence

855 bp (811 high quality bases) assembled on 2007-05-15

> BS16738.3prime
ATGGTCTAGAAAGCTTTTACATGGCTGATGAGATCTGCTGCCCCTGTTGA
TAGAGTTGATCTTGCTGCTGCGGCTGTTGCTGCTGCTGCTGTTGTTGCTG
CTGCGGTTGGTACTGCTGCTGCTGCTGCTGCGGCTGTTGGTACTGCGGCT
GTTGCTGCTGCCCCATCTGCTGCTGCGGCGCCAGTTGCAATGGCGGCGGT
GTGTTGCCAATTGCTGCCGCAGCTGCTCGGGCATTTTGCTGCGTTGTGGC
CTCGTTGGTCTTCAGGAAATATGTTATTAAATCGATGGGCAGCGGGAACA
CAATCGTCGAGTTCTTCTCCGCAGATATGGTGTTGAGTGTCTGAAGGTAG
CGCAGTTGGAGGGCAGCCGGCGAATCGCCAATCACCTCGGACGCCTCGCG
AAGAGCCCTCGACGCCTTCTGTTCTCCTTCGGCGGCGATGACTTTGGCGC
GGGCTTCCCGGGCGGCTTCTGCCTCCGCGGCCATGGCACGTTGCAGTTGC
ACCGGCAGACGCACGTCCTTGATTTCCACACGTTCAACTTTGATGCCCCA
GGCATCGGTGGCTTCGTCGAGTTGAACCTGCATTGTGCCGGAAATCGTCA
TACGCTCGCTGAGTATCTCATGCAAATGCCGAGTTCCCATTGTGTTTCGT
AGAGTAGTCTGTGCCAGTAGCCTGGTCGAATGGTGAGCATTCTCCACGTT
CGCGATAGAGACGGTCGCATTTGATACCCGATAGTAAACCACTGCATCCA
CCGAAACCGTAACGCTATCCTTTGTGAGAACCTCCTGCGGTGGCACATCG
TATGTGCGAGTACGCAAGTCCACACGGGCATAGGAGTCAATGCAGGGCAG
GATGA

BS16738.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:13:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG32245-PB 1518 CG32245-RB 680..1518 855..17 4195 100 Minus
CG32245-PC 1197 CG32245-RC 359..1197 855..17 4195 100 Minus
CG32245-PA 1194 CG32245-RA 356..1194 855..17 4195 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:13:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG42540-RG 3802 CG42540-RG 1024..1863 855..16 4200 100 Minus
CG42540-RJ 4175 CG42540-RJ 1397..2236 855..16 4200 100 Minus
CG42540-RI 3899 CG42540-RI 1121..1960 855..16 4200 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4590026..4590356 346..16 1655 100 Minus
3L 28110227 3L 4586578..4586785 783..576 1040 100 Minus
3L 28110227 3L 4589787..4589967 521..341 905 100 Minus
3L 28110227 3L 4580086..4580161 855..780 380 100 Minus
3L 28110227 3L 4588066..4588124 580..522 295 100 Minus
X 23542271 X 19186315..19186413 484..386 210 80.8 Minus
Blast to na_te.dros performed 2015-02-13 00:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Tel 2485 Dvir\Tel 2485bp Derived from AF009439 (Rel. 66, Last updated, Version 3). 1502..1565 272..335 121 69.2 Plus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 514..661 393..545 114 54.9 Plus

BS16738.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:13:47 Download gff for BS16738.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32245-PA 357..1194 17..854 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:54:28 Download gff for BS16738.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42540-RI 1122..1967 11..854 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:36:34 Download gff for BS16738.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42540-RI 1122..1967 11..854 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:36:34 Download gff for BS16738.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4580087..4580159 782..854 100 -> Minus
3L 4586580..4586783 578..781 100 -> Minus
3L 4588069..4588124 522..577 100 -> Minus
3L 4589787..4589967 341..521 100 -> Minus
3L 4590032..4590363 11..340 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:54:28 Download gff for BS16738.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4580087..4580159 782..854 100 -> Minus
arm_3L 4586580..4586783 578..781 100 -> Minus
arm_3L 4588069..4588124 522..577 100 -> Minus
arm_3L 4589787..4589967 341..521 100 -> Minus
arm_3L 4590032..4590363 11..340 99   Minus

BS16738.5prime Sequence

887 bp (797 high quality bases) assembled on 2007-05-15

> BS16738.5prime
GAAGTTATCAGTCGACATGGCGGCAATGAGTGCGGATATTGTGCCCATGG
AACAAGTGAGCTCGATGGTCTCCAATGGCGGTGGCAGCGTGGCCATGCAG
CGCGATGATGAGTACAGGAATCGGATCATGAAAATACGTAGACTTGATAC
ACAAGCAAAACATTCACATGGATTTCTCTATTCGGACGAGGAAATCAGCG
ATAAGGCATCAACATGCGGAAAATTGCTAATATTTCTTTCCGTGGCTCTT
GTGATAATGACGCTACCCTTCAGTCTCTTTGTTTGCTTTAAGGTGGTGCA
GGAGTACGAGCGCGCGGTTATCTTCCGTTTGGGTCGTCTTATGCAGGGCG
GTGCCAAGGGCCCAGGTATCTTCTTCATCCTGCCCTGCATTGACTCCTAT
GCCCGTGTGGACTTGCGTACTCGCACATACGATGTGCCACCGCAGGAGGT
TCTCACAAAGGATAGCGTTACGGTTTCGGTGGATGCAGTGGTTTACTATC
GGGTATCAAATGCGACCGTCTCTATCGCGAACGTGGAGAATGCTCACCAT
TCGACCAGGCTACTGGCACAGACTACTCTACGAAACACAATGGGAACTCG
GCATTTGCATGAGATACTCAGCGAGCGTATGACGATTTCCGGCACAATGC
AGGTTCAACTCGACGAAGCCACCGATGCCTGGGGCATCAAAGTTGAACGT
GTGGAAATCAAGGACGTGCGTCTGCCGGTGCAACTGCAACGTGCCATGGC
CGCGGAGGCAGAAGCCGCCCGGGAAGCCCGCGCCAAAGTCATCGCCGCCG
AAGGAGAACAGAANGCGTCGAGGGCTCTTCGCGAGGCGTCCGAAGTGATT
GGCGATTCGCCGGCTGCCCTCCNACTGCGCTACCTTC

BS16738.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG32245-PC 1197 CG32245-RC 1..871 17..887 4292 99.6 Plus
CG32245-PA 1194 CG32245-RA 164..868 183..887 3462 99.5 Plus
CG32245-PB 1518 CG32245-RB 488..1192 183..887 3462 99.5 Plus
CG32245-PA 1194 CG32245-RA 51..163 34..146 565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG42540-RB 3219 CG42540-RB 80..953 14..887 4333 99.7 Plus
CG42540-RI 3899 CG42540-RI 780..1633 34..887 4233 99.6 Plus
CG42540-RK 3887 CG42540-RK 780..1621 34..887 4043 98.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:15:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4586578..4586785 447..654 1040 100 Plus
3L 28110227 3L 4589787..4589965 709..887 858 98.3 Plus
3L 28110227 3L 4578760..4578871 183..294 560 100 Plus
3L 28110227 3L 4563796..4563896 34..134 505 100 Plus
3L 28110227 3L 4580074..4580161 363..450 440 100 Plus
3L 28110227 3L 4579445..4579521 291..367 385 100 Plus
3L 28110227 3L 4588066..4588124 650..708 295 100 Plus
X 23542271 X 19186315..19186412 746..843 194 79.6 Plus
3L 28110227 3L 4577916..4577952 146..182 185 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:15:08 has no hits.

BS16738.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:08:53 Download gff for BS16738.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32245-PC 1..871 17..887 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:50:34 Download gff for BS16738.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42540-RB 77..953 9..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:59:16 Download gff for BS16738.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42540-RB 77..953 9..887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:59:16 Download gff for BS16738.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4586580..4586783 449..652 100 -> Plus
3L 4588069..4588124 653..708 100 -> Plus
3L 4589787..4589965 709..887 98   Plus
3L 4556163..4556186 9..34 92 -> Plus
3L 4563797..4563904 35..146 93 -> Plus
3L 4577917..4577952 147..182 100 -> Plus
3L 4578760..4578869 183..292 100 -> Plus
3L 4579447..4579519 293..365 100 -> Plus
3L 4580077..4580159 366..448 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:50:34 Download gff for BS16738.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4556163..4556186 9..34 92 -> Plus
arm_3L 4563797..4563904 35..146 93 -> Plus
arm_3L 4577917..4577952 147..182 100 -> Plus
arm_3L 4578760..4578869 183..292 100 -> Plus
arm_3L 4579447..4579519 293..365 100 -> Plus
arm_3L 4580077..4580159 366..448 100 -> Plus
arm_3L 4586580..4586783 449..652 100 -> Plus
arm_3L 4588069..4588124 653..708 100 -> Plus
arm_3L 4589787..4589965 709..887 98   Plus

BS16738.complete Sequence

1229 bp assembled on 2007-05-07

GenBank Submission: FJ638186

> BS16738.complete
GAAGTTATCAGTCGACATGGCGGCAATGAGTGCGGATATTGTGCCCATGG
AACAAGTGAGCTCGATGGTCTCCAATGGCGGTGGCAGCGTGGCCATGCAG
CGCGATGATGAGTACAGGAATCGGATCATGAAAATACGTAGACTTGATAC
ACAAGCAAAACATTCACATGGATTTCTCTATTCGGACGAGGAAATCAGCG
ATAAGGCATCAACATGCGGAAAATTGCTAATATTTCTTTCCGTGGCTCTT
GTGATAATGACGCTACCCTTCAGTCTCTTTGTTTGCTTTAAGGTGGTGCA
GGAGTACGAGCGCGCGGTTATCTTCCGTTTGGGTCGTCTTATGCAGGGCG
GTGCCAAGGGCCCAGGTATCTTCTTCATCCTGCCCTGCATTGACTCCTAT
GCCCGTGTGGACTTGCGTACTCGCACATACGATGTGCCACCGCAGGAGGT
TCTCACAAAGGATAGCGTTACGGTTTCGGTGGATGCAGTGGTTTACTATC
GGGTATCAAATGCGACCGTCTCTATCGCGAACGTGGAGAATGCTCACCAT
TCGACCAGGCTACTGGCACAGACTACTCTACGAAACACAATGGGAACTCG
GCATTTGCATGAGATACTCAGCGAGCGTATGACGATTTCCGGCACAATGC
AGGTTCAACTCGACGAAGCCACCGATGCCTGGGGCATCAAAGTTGAACGT
GTGGAAATCAAGGACGTGCGTCTGCCGGTGCAACTGCAACGTGCCATGGC
CGCGGAGGCAGAAGCCGCCCGGGAAGCCCGCGCCAAAGTCATCGCCGCCG
AAGGAGAACAGAAGGCGTCGAGGGCTCTTCGCGAGGCGTCCGAGGTGATT
GGCGATTCGCCGGCTGCCCTCCAACTGCGCTACCTTCAGACACTCAACAC
CATATCTGCGGAGAAGAACTCGACGATTGTGTTCCCGCTGCCCATCGATT
TAATAACATATTTCCTGAAGACCAACGAGGCCACAACGCAGCAAAATGCC
CGAGCAGCTGCGGCAGCAATTGGCAACACACCGCCGCCATTGCAACTGGC
GCCGCAGCAGCAGATGGGGCAGCAGCAACAGCCGCAGTACCAACAGCCGC
AGCAGCAGCAGCAGCAGTACCAACCGCAGCAGCAACAACAGCAGCAGCAG
CAACAGCCGCAGCAGCAAGATCAACTCTATCAACAGGGGCAGCAGATCTC
ATCAGCCATGTAAAAGCTTTCTAGACCAT

BS16738.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:11:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG42540-RB 1197 CG42540-PB 1..1197 17..1213 5985 100 Plus
CG42540-RI 1230 CG42540-PI 51..1230 34..1213 5900 100 Plus
CG42540-RK 1218 CG42540-PK 51..1218 34..1213 5685 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:11:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG42540-RB 3219 CG42540-RB 80..1280 14..1214 6005 100 Plus
CG42540-RI 3899 CG42540-RI 780..1960 34..1214 5905 100 Plus
CG42540-RK 3887 CG42540-RK 780..1948 34..1214 5690 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:11:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4590026..4590356 884..1214 1655 100 Plus
3L 28110227 3L 4586578..4586785 447..654 1040 100 Plus
3L 28110227 3L 4589787..4589967 709..889 905 100 Plus
3L 28110227 3L 4578760..4578871 183..294 560 100 Plus
3L 28110227 3L 4563796..4563896 34..134 505 100 Plus
3L 28110227 3L 4580074..4580161 363..450 440 100 Plus
3L 28110227 3L 4579445..4579521 291..367 385 100 Plus
3L 28110227 3L 4588066..4588124 650..708 295 100 Plus
X 23542271 X 19186315..19186413 746..844 210 80.8 Plus
3L 28110227 3L 4577916..4577952 146..182 185 100 Plus
Blast to na_te.dros performed 2014-11-28 08:11:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Tel 2485 Dvir\Tel 2485bp Derived from AF009439 (Rel. 66, Last updated, Version 3). 1502..1565 958..895 121 69.2 Minus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 514..661 837..685 114 54.9 Minus

BS16738.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:11 Download gff for BS16738.complete
Subject Subject Range Query Range Percent Splice Strand
CG32245-RC 1..1197 17..1213 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:39:00 Download gff for BS16738.complete
Subject Subject Range Query Range Percent Splice Strand
CG32245-RC 83..1277 17..1211 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:02 Download gff for BS16738.complete
Subject Subject Range Query Range Percent Splice Strand
CG42540-RB 83..1277 17..1211 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:11 Download gff for BS16738.complete
Subject Subject Range Query Range Percent Splice Strand
CG32245-RC 77..1287 9..1219 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:12:48 Download gff for BS16738.complete
Subject Subject Range Query Range Percent Splice Strand
CG42540-RB 83..1277 17..1211 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:12:48 Download gff for BS16738.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4556169..4556186 17..34 100 -> Plus
3L 4563797..4563904 35..146 93 -> Plus
3L 4577917..4577952 147..182 100 -> Plus
3L 4578760..4578869 183..292 100 -> Plus
3L 4579447..4579519 293..365 100 -> Plus
3L 4580077..4580159 366..448 100 -> Plus
3L 4586580..4586783 449..652 100 -> Plus
3L 4588069..4588124 653..708 100 -> Plus
3L 4589787..4589967 709..889 100 -> Plus
3L 4590032..4590353 890..1211 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:02 Download gff for BS16738.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4589787..4589967 709..889 100 -> Plus
arm_3L 4590032..4590353 890..1211 100   Plus
arm_3L 4556169..4556186 17..34 100 -> Plus
arm_3L 4563797..4563904 35..146 93 -> Plus
arm_3L 4577917..4577952 147..182 100 -> Plus
arm_3L 4578760..4578869 183..292 100 -> Plus
arm_3L 4579447..4579519 293..365 100 -> Plus
arm_3L 4580077..4580159 366..448 100 -> Plus
arm_3L 4586580..4586783 449..652 100 -> Plus
arm_3L 4588069..4588124 653..708 100 -> Plus

BS16738.pep Sequence

Translation from 16 to 1212

> BS16738.pep
MAAMSADIVPMEQVSSMVSNGGGSVAMQRDDEYRNRIMKIRRLDTQAKHS
HGFLYSDEEISDKASTCGKLLIFLSVALVIMTLPFSLFVCFKVVQEYERA
VIFRLGRLMQGGAKGPGIFFILPCIDSYARVDLRTRTYDVPPQEVLTKDS
VTVSVDAVVYYRVSNATVSIANVENAHHSTRLLAQTTLRNTMGTRHLHEI
LSERMTISGTMQVQLDEATDAWGIKVERVEIKDVRLPVQLQRAMAAEAEA
AREARAKVIAAEGEQKASRALREASEVIGDSPAALQLRYLQTLNTISAEK
NSTIVFPLPIDLITYFLKTNEATTQQNARAAAAAIGNTPPPLQLAPQQQM
GQQQQPQYQQPQQQQQQYQPQQQQQQQQQQPQQQDQLYQQGQQISSAM*

BS16738.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG42540-PB 398 CG32245-PC 1..398 1..398 1990 100 Plus
CG42540-PI 409 CG42540-PI 18..409 7..398 1964 100 Plus
CG42540-PK 405 CG42540-PK 18..405 7..398 1926 98.7 Plus
CG42540-PC 397 CG32245-PA 18..397 7..398 1870 96.7 Plus
CG42540-PH 393 CG42540-PH 18..393 7..398 1848 95.7 Plus