Clone Sequence Records
BS16738.3prime Sequence
855 bp (811 high quality bases) assembled on 2007-05-15
> BS16738.3prime
ATGGTCTAGAAAGCTTTTACATGGCTGATGAGATCTGCTGCCCCTGTTGA
TAGAGTTGATCTTGCTGCTGCGGCTGTTGCTGCTGCTGCTGTTGTTGCTG
CTGCGGTTGGTACTGCTGCTGCTGCTGCTGCGGCTGTTGGTACTGCGGCT
GTTGCTGCTGCCCCATCTGCTGCTGCGGCGCCAGTTGCAATGGCGGCGGT
GTGTTGCCAATTGCTGCCGCAGCTGCTCGGGCATTTTGCTGCGTTGTGGC
CTCGTTGGTCTTCAGGAAATATGTTATTAAATCGATGGGCAGCGGGAACA
CAATCGTCGAGTTCTTCTCCGCAGATATGGTGTTGAGTGTCTGAAGGTAG
CGCAGTTGGAGGGCAGCCGGCGAATCGCCAATCACCTCGGACGCCTCGCG
AAGAGCCCTCGACGCCTTCTGTTCTCCTTCGGCGGCGATGACTTTGGCGC
GGGCTTCCCGGGCGGCTTCTGCCTCCGCGGCCATGGCACGTTGCAGTTGC
ACCGGCAGACGCACGTCCTTGATTTCCACACGTTCAACTTTGATGCCCCA
GGCATCGGTGGCTTCGTCGAGTTGAACCTGCATTGTGCCGGAAATCGTCA
TACGCTCGCTGAGTATCTCATGCAAATGCCGAGTTCCCATTGTGTTTCGT
AGAGTAGTCTGTGCCAGTAGCCTGGTCGAATGGTGAGCATTCTCCACGTT
CGCGATAGAGACGGTCGCATTTGATACCCGATAGTAAACCACTGCATCCA
CCGAAACCGTAACGCTATCCTTTGTGAGAACCTCCTGCGGTGGCACATCG
TATGTGCGAGTACGCAAGTCCACACGGGCATAGGAGTCAATGCAGGGCAG
GATGA
BS16738.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:13:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32245-PB | 1518 | CG32245-RB | 680..1518 | 855..17 | 4195 | 100 | Minus |
CG32245-PC | 1197 | CG32245-RC | 359..1197 | 855..17 | 4195 | 100 | Minus |
CG32245-PA | 1194 | CG32245-RA | 356..1194 | 855..17 | 4195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:13:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42540-RG | 3802 | CG42540-RG | 1024..1863 | 855..16 | 4200 | 100 | Minus |
CG42540-RJ | 4175 | CG42540-RJ | 1397..2236 | 855..16 | 4200 | 100 | Minus |
CG42540-RI | 3899 | CG42540-RI | 1121..1960 | 855..16 | 4200 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:13:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4590026..4590356 | 346..16 | 1655 | 100 | Minus |
3L | 28110227 | 3L | 4586578..4586785 | 783..576 | 1040 | 100 | Minus |
3L | 28110227 | 3L | 4589787..4589967 | 521..341 | 905 | 100 | Minus |
3L | 28110227 | 3L | 4580086..4580161 | 855..780 | 380 | 100 | Minus |
3L | 28110227 | 3L | 4588066..4588124 | 580..522 | 295 | 100 | Minus |
X | 23542271 | X | 19186315..19186413 | 484..386 | 210 | 80.8 | Minus |
Blast to na_te.dros performed 2015-02-13 00:13:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Tel | 2485 | Dvir\Tel 2485bp Derived from AF009439 (Rel. 66, Last updated, Version 3). | 1502..1565 | 272..335 | 121 | 69.2 | Plus |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 514..661 | 393..545 | 114 | 54.9 | Plus |
BS16738.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:13:47 Download gff for
BS16738.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32245-PA | 357..1194 | 17..854 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:54:28 Download gff for
BS16738.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42540-RI | 1122..1967 | 11..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:36:34 Download gff for
BS16738.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42540-RI | 1122..1967 | 11..854 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:36:34 Download gff for
BS16738.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4580087..4580159 | 782..854 | 100 | -> | Minus |
3L | 4586580..4586783 | 578..781 | 100 | -> | Minus |
3L | 4588069..4588124 | 522..577 | 100 | -> | Minus |
3L | 4589787..4589967 | 341..521 | 100 | -> | Minus |
3L | 4590032..4590363 | 11..340 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:54:28 Download gff for
BS16738.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4580087..4580159 | 782..854 | 100 | -> | Minus |
arm_3L | 4586580..4586783 | 578..781 | 100 | -> | Minus |
arm_3L | 4588069..4588124 | 522..577 | 100 | -> | Minus |
arm_3L | 4589787..4589967 | 341..521 | 100 | -> | Minus |
arm_3L | 4590032..4590363 | 11..340 | 99 | | Minus |
BS16738.5prime Sequence
887 bp (797 high quality bases) assembled on 2007-05-15
> BS16738.5prime
GAAGTTATCAGTCGACATGGCGGCAATGAGTGCGGATATTGTGCCCATGG
AACAAGTGAGCTCGATGGTCTCCAATGGCGGTGGCAGCGTGGCCATGCAG
CGCGATGATGAGTACAGGAATCGGATCATGAAAATACGTAGACTTGATAC
ACAAGCAAAACATTCACATGGATTTCTCTATTCGGACGAGGAAATCAGCG
ATAAGGCATCAACATGCGGAAAATTGCTAATATTTCTTTCCGTGGCTCTT
GTGATAATGACGCTACCCTTCAGTCTCTTTGTTTGCTTTAAGGTGGTGCA
GGAGTACGAGCGCGCGGTTATCTTCCGTTTGGGTCGTCTTATGCAGGGCG
GTGCCAAGGGCCCAGGTATCTTCTTCATCCTGCCCTGCATTGACTCCTAT
GCCCGTGTGGACTTGCGTACTCGCACATACGATGTGCCACCGCAGGAGGT
TCTCACAAAGGATAGCGTTACGGTTTCGGTGGATGCAGTGGTTTACTATC
GGGTATCAAATGCGACCGTCTCTATCGCGAACGTGGAGAATGCTCACCAT
TCGACCAGGCTACTGGCACAGACTACTCTACGAAACACAATGGGAACTCG
GCATTTGCATGAGATACTCAGCGAGCGTATGACGATTTCCGGCACAATGC
AGGTTCAACTCGACGAAGCCACCGATGCCTGGGGCATCAAAGTTGAACGT
GTGGAAATCAAGGACGTGCGTCTGCCGGTGCAACTGCAACGTGCCATGGC
CGCGGAGGCAGAAGCCGCCCGGGAAGCCCGCGCCAAAGTCATCGCCGCCG
AAGGAGAACAGAANGCGTCGAGGGCTCTTCGCGAGGCGTCCGAAGTGATT
GGCGATTCGCCGGCTGCCCTCCNACTGCGCTACCTTC
BS16738.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:08:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32245-PC | 1197 | CG32245-RC | 1..871 | 17..887 | 4292 | 99.6 | Plus |
CG32245-PA | 1194 | CG32245-RA | 164..868 | 183..887 | 3462 | 99.5 | Plus |
CG32245-PB | 1518 | CG32245-RB | 488..1192 | 183..887 | 3462 | 99.5 | Plus |
CG32245-PA | 1194 | CG32245-RA | 51..163 | 34..146 | 565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:15:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42540-RB | 3219 | CG42540-RB | 80..953 | 14..887 | 4333 | 99.7 | Plus |
CG42540-RI | 3899 | CG42540-RI | 780..1633 | 34..887 | 4233 | 99.6 | Plus |
CG42540-RK | 3887 | CG42540-RK | 780..1621 | 34..887 | 4043 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:15:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4586578..4586785 | 447..654 | 1040 | 100 | Plus |
3L | 28110227 | 3L | 4589787..4589965 | 709..887 | 858 | 98.3 | Plus |
3L | 28110227 | 3L | 4578760..4578871 | 183..294 | 560 | 100 | Plus |
3L | 28110227 | 3L | 4563796..4563896 | 34..134 | 505 | 100 | Plus |
3L | 28110227 | 3L | 4580074..4580161 | 363..450 | 440 | 100 | Plus |
3L | 28110227 | 3L | 4579445..4579521 | 291..367 | 385 | 100 | Plus |
3L | 28110227 | 3L | 4588066..4588124 | 650..708 | 295 | 100 | Plus |
X | 23542271 | X | 19186315..19186412 | 746..843 | 194 | 79.6 | Plus |
3L | 28110227 | 3L | 4577916..4577952 | 146..182 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:15:08 has no hits.
BS16738.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:08:53 Download gff for
BS16738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32245-PC | 1..871 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:50:34 Download gff for
BS16738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42540-RB | 77..953 | 9..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:59:16 Download gff for
BS16738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42540-RB | 77..953 | 9..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:59:16 Download gff for
BS16738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4586580..4586783 | 449..652 | 100 | -> | Plus |
3L | 4588069..4588124 | 653..708 | 100 | -> | Plus |
3L | 4589787..4589965 | 709..887 | 98 | | Plus |
3L | 4556163..4556186 | 9..34 | 92 | -> | Plus |
3L | 4563797..4563904 | 35..146 | 93 | -> | Plus |
3L | 4577917..4577952 | 147..182 | 100 | -> | Plus |
3L | 4578760..4578869 | 183..292 | 100 | -> | Plus |
3L | 4579447..4579519 | 293..365 | 100 | -> | Plus |
3L | 4580077..4580159 | 366..448 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:50:34 Download gff for
BS16738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4556163..4556186 | 9..34 | 92 | -> | Plus |
arm_3L | 4563797..4563904 | 35..146 | 93 | -> | Plus |
arm_3L | 4577917..4577952 | 147..182 | 100 | -> | Plus |
arm_3L | 4578760..4578869 | 183..292 | 100 | -> | Plus |
arm_3L | 4579447..4579519 | 293..365 | 100 | -> | Plus |
arm_3L | 4580077..4580159 | 366..448 | 100 | -> | Plus |
arm_3L | 4586580..4586783 | 449..652 | 100 | -> | Plus |
arm_3L | 4588069..4588124 | 653..708 | 100 | -> | Plus |
arm_3L | 4589787..4589965 | 709..887 | 98 | | Plus |
BS16738.complete Sequence
1229 bp assembled on 2007-05-07
GenBank Submission: FJ638186
> BS16738.complete
GAAGTTATCAGTCGACATGGCGGCAATGAGTGCGGATATTGTGCCCATGG
AACAAGTGAGCTCGATGGTCTCCAATGGCGGTGGCAGCGTGGCCATGCAG
CGCGATGATGAGTACAGGAATCGGATCATGAAAATACGTAGACTTGATAC
ACAAGCAAAACATTCACATGGATTTCTCTATTCGGACGAGGAAATCAGCG
ATAAGGCATCAACATGCGGAAAATTGCTAATATTTCTTTCCGTGGCTCTT
GTGATAATGACGCTACCCTTCAGTCTCTTTGTTTGCTTTAAGGTGGTGCA
GGAGTACGAGCGCGCGGTTATCTTCCGTTTGGGTCGTCTTATGCAGGGCG
GTGCCAAGGGCCCAGGTATCTTCTTCATCCTGCCCTGCATTGACTCCTAT
GCCCGTGTGGACTTGCGTACTCGCACATACGATGTGCCACCGCAGGAGGT
TCTCACAAAGGATAGCGTTACGGTTTCGGTGGATGCAGTGGTTTACTATC
GGGTATCAAATGCGACCGTCTCTATCGCGAACGTGGAGAATGCTCACCAT
TCGACCAGGCTACTGGCACAGACTACTCTACGAAACACAATGGGAACTCG
GCATTTGCATGAGATACTCAGCGAGCGTATGACGATTTCCGGCACAATGC
AGGTTCAACTCGACGAAGCCACCGATGCCTGGGGCATCAAAGTTGAACGT
GTGGAAATCAAGGACGTGCGTCTGCCGGTGCAACTGCAACGTGCCATGGC
CGCGGAGGCAGAAGCCGCCCGGGAAGCCCGCGCCAAAGTCATCGCCGCCG
AAGGAGAACAGAAGGCGTCGAGGGCTCTTCGCGAGGCGTCCGAGGTGATT
GGCGATTCGCCGGCTGCCCTCCAACTGCGCTACCTTCAGACACTCAACAC
CATATCTGCGGAGAAGAACTCGACGATTGTGTTCCCGCTGCCCATCGATT
TAATAACATATTTCCTGAAGACCAACGAGGCCACAACGCAGCAAAATGCC
CGAGCAGCTGCGGCAGCAATTGGCAACACACCGCCGCCATTGCAACTGGC
GCCGCAGCAGCAGATGGGGCAGCAGCAACAGCCGCAGTACCAACAGCCGC
AGCAGCAGCAGCAGCAGTACCAACCGCAGCAGCAACAACAGCAGCAGCAG
CAACAGCCGCAGCAGCAAGATCAACTCTATCAACAGGGGCAGCAGATCTC
ATCAGCCATGTAAAAGCTTTCTAGACCAT
BS16738.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:11:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42540-RB | 1197 | CG42540-PB | 1..1197 | 17..1213 | 5985 | 100 | Plus |
CG42540-RI | 1230 | CG42540-PI | 51..1230 | 34..1213 | 5900 | 100 | Plus |
CG42540-RK | 1218 | CG42540-PK | 51..1218 | 34..1213 | 5685 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:11:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42540-RB | 3219 | CG42540-RB | 80..1280 | 14..1214 | 6005 | 100 | Plus |
CG42540-RI | 3899 | CG42540-RI | 780..1960 | 34..1214 | 5905 | 100 | Plus |
CG42540-RK | 3887 | CG42540-RK | 780..1948 | 34..1214 | 5690 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:11:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4590026..4590356 | 884..1214 | 1655 | 100 | Plus |
3L | 28110227 | 3L | 4586578..4586785 | 447..654 | 1040 | 100 | Plus |
3L | 28110227 | 3L | 4589787..4589967 | 709..889 | 905 | 100 | Plus |
3L | 28110227 | 3L | 4578760..4578871 | 183..294 | 560 | 100 | Plus |
3L | 28110227 | 3L | 4563796..4563896 | 34..134 | 505 | 100 | Plus |
3L | 28110227 | 3L | 4580074..4580161 | 363..450 | 440 | 100 | Plus |
3L | 28110227 | 3L | 4579445..4579521 | 291..367 | 385 | 100 | Plus |
3L | 28110227 | 3L | 4588066..4588124 | 650..708 | 295 | 100 | Plus |
X | 23542271 | X | 19186315..19186413 | 746..844 | 210 | 80.8 | Plus |
3L | 28110227 | 3L | 4577916..4577952 | 146..182 | 185 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 08:11:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Tel | 2485 | Dvir\Tel 2485bp Derived from AF009439 (Rel. 66, Last updated, Version 3). | 1502..1565 | 958..895 | 121 | 69.2 | Minus |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 514..661 | 837..685 | 114 | 54.9 | Minus |
BS16738.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:11 Download gff for
BS16738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32245-RC | 1..1197 | 17..1213 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:39:00 Download gff for
BS16738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32245-RC | 83..1277 | 17..1211 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:02 Download gff for
BS16738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42540-RB | 83..1277 | 17..1211 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:11 Download gff for
BS16738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32245-RC | 77..1287 | 9..1219 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:12:48 Download gff for
BS16738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42540-RB | 83..1277 | 17..1211 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:12:48 Download gff for
BS16738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4556169..4556186 | 17..34 | 100 | -> | Plus |
3L | 4563797..4563904 | 35..146 | 93 | -> | Plus |
3L | 4577917..4577952 | 147..182 | 100 | -> | Plus |
3L | 4578760..4578869 | 183..292 | 100 | -> | Plus |
3L | 4579447..4579519 | 293..365 | 100 | -> | Plus |
3L | 4580077..4580159 | 366..448 | 100 | -> | Plus |
3L | 4586580..4586783 | 449..652 | 100 | -> | Plus |
3L | 4588069..4588124 | 653..708 | 100 | -> | Plus |
3L | 4589787..4589967 | 709..889 | 100 | -> | Plus |
3L | 4590032..4590353 | 890..1211 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:02 Download gff for
BS16738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4589787..4589967 | 709..889 | 100 | -> | Plus |
arm_3L | 4590032..4590353 | 890..1211 | 100 | | Plus |
arm_3L | 4556169..4556186 | 17..34 | 100 | -> | Plus |
arm_3L | 4563797..4563904 | 35..146 | 93 | -> | Plus |
arm_3L | 4577917..4577952 | 147..182 | 100 | -> | Plus |
arm_3L | 4578760..4578869 | 183..292 | 100 | -> | Plus |
arm_3L | 4579447..4579519 | 293..365 | 100 | -> | Plus |
arm_3L | 4580077..4580159 | 366..448 | 100 | -> | Plus |
arm_3L | 4586580..4586783 | 449..652 | 100 | -> | Plus |
arm_3L | 4588069..4588124 | 653..708 | 100 | -> | Plus |
BS16738.pep Sequence
Translation from 16 to 1212
> BS16738.pep
MAAMSADIVPMEQVSSMVSNGGGSVAMQRDDEYRNRIMKIRRLDTQAKHS
HGFLYSDEEISDKASTCGKLLIFLSVALVIMTLPFSLFVCFKVVQEYERA
VIFRLGRLMQGGAKGPGIFFILPCIDSYARVDLRTRTYDVPPQEVLTKDS
VTVSVDAVVYYRVSNATVSIANVENAHHSTRLLAQTTLRNTMGTRHLHEI
LSERMTISGTMQVQLDEATDAWGIKVERVEIKDVRLPVQLQRAMAAEAEA
AREARAKVIAAEGEQKASRALREASEVIGDSPAALQLRYLQTLNTISAEK
NSTIVFPLPIDLITYFLKTNEATTQQNARAAAAAIGNTPPPLQLAPQQQM
GQQQQPQYQQPQQQQQQYQPQQQQQQQQQQPQQQDQLYQQGQQISSAM*
BS16738.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42540-PB | 398 | CG32245-PC | 1..398 | 1..398 | 1990 | 100 | Plus |
CG42540-PI | 409 | CG42540-PI | 18..409 | 7..398 | 1964 | 100 | Plus |
CG42540-PK | 405 | CG42540-PK | 18..405 | 7..398 | 1926 | 98.7 | Plus |
CG42540-PC | 397 | CG32245-PA | 18..397 | 7..398 | 1870 | 96.7 | Plus |
CG42540-PH | 393 | CG42540-PH | 18..393 | 7..398 | 1848 | 95.7 | Plus |