Clone BS16740 Report

Search the DGRC for BS16740

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:167
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG3558-RA
Protein status:BS16740.pep: full length peptide match
Sequenced Size:3158

Clone Sequence Records

BS16740.complete Sequence

3158 bp assembled on 2009-12-07

GenBank Submission: KX801055

> BS16740.complete
GAAGTTATCAGTCGACATGTGGCTGCGCCAGAGCAGCGGTGGAGGCGTTG
CCTCCGTCGGACACGTCGGCCCACTGCGACAGCGACCCATCGACGCTGCC
ACAGACTGCGATCCGCGCGCTTGCTACGACAGCTTCTGTAAGCACTGGCA
GCAGGCCTTCGAGATCATCCAGCACAGTGCACCGCCCTCGCACGACGACG
TGCTGGGCGTGGTCTCGCACTTGGACTACATGGTCACCCTGCTGCTCGTG
GAGCTGCATCACTGCAACAAAGTCTCGCTGCCGGCGGCCGAGGCTAGTGG
TCCGCCTGCGGCGCCCTGCCTGGAATTCCTGCTCAGCGAGAATCTGCTGG
ACAAGCTGTACGAGTGGGCCTGCACCACGGGACGGTATGCCAACGCTGTG
AGGCTGGAGCAGCTGAAGCTGTACGAACTGCTCGTCAGCCACTCGCGCCA
CCAGCTGCTCTGCCACGAGCCCTTCCTGCGACCCCTGCTCAAGATACTGG
CATCCAGCCAGGGCGAGATCTTTCCGCCCGATCTCGAGAAGCGCCTGGTG
ATCCTGCTGAACCAGCTGTGCGTGGTTCTTATGCAGAATGTCCACCTGCT
GGACCTCTTTTTCTTCTCCGCCCAGACGCAGGTGCAGGAGCAGATATTAA
ATGGCAACGTGGCGCCACCCAAAAGCGGAACCACTACCAACTTCATAATA
TTTTCGCTGCTTATCCCGTACGTGCATCGCGAAGGCAGTCTTGGTCACCA
AGCGCGCGATGCTCTGCTGCTGTGCATGGCGCTTTCGCAGAAGAACTCCA
ACATTGGAACGTACATAGCCCAGTACTCCTCGATCTGCCCGCTGTTGGTG
ACCGGTCTGGGTGGGCTTTACTCGCGTCTGCCCAACAGCATCGAGATTAG
CTCCATCGACTGGCACCGGATAACGCCAGACGATGTGACAGAGATCCCGG
AGCTGACGCTGTTCATGAACGCCCTCGAGTTTTGCAATGCGGTGGTGCAG
GTGGCCCATGAGATGATCAAGCAGCAGTTGCTGGACTTCATGTACCAGGG
CTTTATTGTTCCCGTGCTGGGACCTGCGATCCTTCAGACGAACATCGACT
CGCAAATCTCGGCAATGTCGTACCTGGACCTGATCCTGCGCTCCATCACG
GAGCCCGGACTGCTGAGGGCCTTCGTTCGGTTTCTGCTCGATACGGAAAA
GTTTGACGGCGAACGGATACTTGATGCCCTGGTCGAGCGCCTGAACTCGC
CGGATGCCAATCTGTGCATGGTCACGATGGCATTGTTTGACACCCTGCTG
GGTCTGCACTGCGAGGACCTGATGCTGGAGCTGCTGCTCAAGTTCATGCT
GCCGGGCAAGCATGTGCCCATCTCACATCGCCACAAGATCAACAAAATCG
ATCCGTATTTGAATAGCAGTGAGTTCTTCCTCGAGCTCTCGCCCGATGTG
ATGAAGAGAGCCAGAGATCTGGCCAGGCCGAAGAGCGTCCACGAGCCTGT
GGTGAGTGAACTGACGCCTCTGCCGAGTCTCCCCTCTCCGGTCATGAGCA
AGACGATTGGAGCCAACTGGAACTATTACGGAGTGCACACCGGTGATAGT
TTGTATGCGAATATACAGGCATATCTCTTCGAGGCTCATTGGCGAATCGC
CCAGTGTCAAAAGGATTGCCTAAAATGGGCCAACAGCTATCGCTACCAAA
AGTGGCCTCGTCACGGGCAAGGAAGAGTCCATGCCCATGCCTTGGAGCTG
GCGCGACAGTTCTTTAGTGAGTTCGGTGGCGGTCCTATCGCCGCCAACGA
GACGGGTGAAAAGCAGCTGGACAGCTTGCAGTCAATTGGCGAGTCAAGCG
GCTACGAATCCTTCAAGTGGCGGCCAGCGGACGAGGAAAGCGAAGCCACG
GATACAACTGTGGCCACGACAGCCAGCGAGGCGGATATGGATCACAATAG
CAGCAGCCTTAGCAGCGTTCTTGGTGCATCCGGCAAACGCGAGTCATGGC
GGACTTCGAACAGCAATCGCAATGAATTAATATTGACGGACCTTGACTTC
TCGGAAGATTTGTTTGCGCAGGGCACCGTAAGCTTAGGTCCCTTTCTCAA
TGCCATTTGGGGCAAACTGCAAACCTTCACGAGCAATTCGCTGTACGTCA
ATCTCCACTTGACCGGGCTGATCACTCGCTTGGCCTGGTATCCCCTGCCG
TTGATTCACTCGCTGCTGCTGCGCTCTGACATAGCCATCACATCGGATAC
GCCCTCTTTTCACCAGGTGCTGCGCATTCTGAAGCAGCAAATAGATGCCG
AGCTGCCAGTGACGGAGGATTCGCTGGAGATCATTGATGTGGCGCGTTCG
TCGCTGATTGATCGAGAGTTCCGCTTGGCAAACGCGCGCAAGGGCAACGA
GGGCTCTCCAATGCATCATAGCCAACAGCAACAGATGGTAACGAACTCCG
GCCAGCAGCAGGGTCAACTGCGATCAGCCTACGCGACCCTCTCGGCCGCC
ACGCCCGTGCAGGCCACGCCCACCAGTGCCTACGATCCGTTCAAGCGCAG
TGATAACAAGCGTCGCAGCATCAGCAAATCCATTACCAGCATGTTTAGCA
GAAAGTCCGCCTCCACGTCCACAGCGCCACCCAATGGATCCTCCGCTTCA
TCTGGCTTATCACAAATTTACGCATTCTTCACCGGAGCTGCCTCGAATCT
GGTGGGGAATAATGCCAGCAACGATGGAAGAGGCATATCACAAGCTCAGA
CGTCCGCAGGCACATGCGAGACCAGCTTGAGTACGCAGCCCCCAGCGGGA
GCATCACGCACAGGAGCCAACGCGACGTCAACAGCGGCATCGGGAAGCAA
CAGCAGCATCGCAGGTTCCACCCTAACGCTCTCCGCCCAGTCGAACACAA
CCACCCACTCGGCGAGCACTCTGCACGGTCTGGATGGCGGCCCGTCGACG
GGTGGTTTCAACTCGGAGCCGGCGTCCCTGGACTCGGTGGCCTCCATGGG
AATCATCGCCAGCACAAGTGGCACCGAGCGATCACGCGATCTGGCCCTAT
GTGCTGTGCTCATGGACGAGTGGCTTAAGGAGCTGGCTGCCATTGCGCAG
GAGCAGAGCGTTGTGCTGGTCACGGAGCAGGGGTCTTTATGAAAGCTTTC
TAGACCAT

BS16740.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:44:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3558-RA 3126 CG3558-PA 1..3126 17..3142 15630 100 Plus
CG3558-RB 3087 CG3558-PB 1..2629 17..2645 13145 100 Plus
CG3558-RC 3150 CG3558-PC 1091..3150 1083..3142 10300 100 Plus
CG3558-RB 3087 CG3558-PB 2627..3087 2682..3142 2305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG3558-RA 4199 CG3558-RA 596..3721 17..3142 15630 100 Plus
CG3558-RB 4160 CG3558-RB 596..3224 17..2645 13145 100 Plus
CG3558-RC 4255 CG3558-RC 1718..3777 1083..3142 10300 100 Plus
CG3558-RB 4160 CG3558-RB 3222..3682 2682..3142 2305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2995431..2996437 1083..2089 5035 100 Plus
2L 23513712 2L 2993735..2994408 17..690 3370 100 Plus
2L 23513712 2L 2996500..2997059 2086..2645 2800 100 Plus
2L 23513712 2L 2997790..2998248 2684..3142 2295 100 Plus
2L 23513712 2L 2994674..2995070 691..1087 1985 100 Plus
2L 23513712 2L 2997491..2997531 2645..2685 205 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:44:23 has no hits.

BS16740.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:09 Download gff for BS16740.complete
Subject Subject Range Query Range Percent Splice Strand
CG3558-RA 1..3126 17..3142 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:56 Download gff for BS16740.complete
Subject Subject Range Query Range Percent Splice Strand
CG3558-RA 605..3729 17..3141 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:22 Download gff for BS16740.complete
Subject Subject Range Query Range Percent Splice Strand
CG3558-RA 596..3720 17..3141 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:36 Download gff for BS16740.complete
Subject Subject Range Query Range Percent Splice Strand
CG3558-RA 605..3729 17..3141 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:42 Download gff for BS16740.complete
Subject Subject Range Query Range Percent Splice Strand
CG3558-RA 596..3720 17..3141 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:42 Download gff for BS16740.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2993735..2994408 17..690 100 -> Plus
2L 2994674..2995070 691..1087 100 -> Plus
2L 2995436..2996435 1088..2087 100 -> Plus
2L 2996502..2997059 2088..2645 100 -> Plus
2L 2997492..2997530 2646..2684 100 -> Plus
2L 2997791..2998247 2685..3141 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:22 Download gff for BS16740.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2993735..2994408 17..690 100 -> Plus
arm_2L 2994674..2995070 691..1087 100 -> Plus
arm_2L 2995436..2996435 1088..2087 100 -> Plus
arm_2L 2996502..2997059 2088..2645 100 -> Plus
arm_2L 2997492..2997530 2646..2684 100 -> Plus
arm_2L 2997791..2998247 2685..3141 100   Plus

BS16740.3prime Sequence

941 bp (786 high quality bases) assembled on 2007-05-15

> BS16740.3prime
ATGGTCTAGAAAGCTTTCATAAAGACCCCTGCTCCGTGACCAGCACAACG
CTCTGCTCCTGCGCAATGGCAGCCAGCTCCTTAAGCCACTCGTCCATGAG
CACAGCACATAGGGCCAGATCGCGTGATCGCTCGGTGCCACTTGTGCTGG
CGATGATTCCCATGGAGGCCACCGAGTCCAGGGACGCCGGCTCCGAGTTG
AAACCACCCGTCGACGGGCCGCCATCCAGACCGTGCAGAGTGCTCGCCGA
GTGGGTGGTTGTGTTCGACTGGGCGGAGAGCGTTAGGGTGGAACCTGCGA
TGCTGCTGTTGCTTCCCGATGCCGCTGTTGACGTCGCGTTGGCTCCTGTG
CGTGATGCTCCCGCTGGGGGCTGCGTACTCAAGCTGGTCTCGCATGTGCC
TGCGGACGTCTGAGCTTGTGATATGCCTCTTCCATCGTTGCTGGCATTAT
TCCCCACCAGATTCGAGGCAGCTCCGGTGAAGAATGCGTAAATTTGTGAT
AAGCCAGATGAAGCGGAGGATCCATTGGGTGGCGCTGTGGACGTGGAGGC
GGACTTTCTGCTAAACATGCTGGTAATGGATTTGCTGATGCTGCGACGCT
TGTTATCACTGCGCTTGAACGGATCGTAGGCACTGGTGGGCGTGGCCTGC
ACGGGCGTGGCGGCCGAGAGGGTCGCGTAGGCTGATCGCAGTTGACCCTG
CTGCTGGCCGGAGTTCGTTACCATCTGTTGCTGTTGGCTATGATGCATTG
GAGAGCCCTCGTTGCCCTTGCGCGCGTTTGCCAAGCGGAACTCTCGATCA
ATCAGCGACGAACGCGCCACATCAATGATCTCCAGCGAATCCTCCGTCAC
TGGCAGCTCGGCATCTATTTGCTGCTTCAGAATGCGCAGCACCTGGTGAA
AAGAGGGCGTATCCGATGTGATGGCTATGTCAAAGCGCAAC

BS16740.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3558-PA 3126 CG3558-RA 2204..3126 939..17 4590 99.8 Minus
CG3558-PB 3087 CG3558-RB 2627..3087 477..17 2305 100 Minus
CG3558-PB 3087 CG3558-RB 2204..2629 939..514 2105 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3558-RC 4255 CG3558-RC 2855..3777 939..17 4600 99.9 Minus
CG3558-RA 4199 CG3558-RA 2799..3721 939..17 4600 99.9 Minus
CG3558-RD 4221 CG3558-RD 3283..3743 477..17 2305 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2997790..2998248 475..17 2295 100 Minus
2L 23513712 2L 2996634..2997059 939..514 2115 99.8 Minus
2L 23513712 2L 2997491..2997531 514..474 205 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:27:55 has no hits.

BS16740.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:16:36 Download gff for BS16740.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3558-PA 2202..3126 17..941 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:22:44 Download gff for BS16740.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3558-RA 2797..3727 11..941 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:56 Download gff for BS16740.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3558-RA 2797..3727 11..941 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:56 Download gff for BS16740.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2996632..2997059 514..941 99 -> Minus
2L 2997492..2997530 475..513 100 -> Minus
2L 2997791..2998254 11..474 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:22:44 Download gff for BS16740.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2996632..2997059 514..941 99 -> Minus
arm_2L 2997492..2997530 475..513 100 -> Minus
arm_2L 2997791..2998254 11..474 99   Minus

BS16740.5prime Sequence

835 bp (787 high quality bases) assembled on 2007-05-15

> BS16740.5prime
GAAGTTATCAGTCGACATGTGGCTGCGCCAGAGCAGCGGTGGAGGCGTTG
CCTCCGTCGGACACGTCGGCCCACTGCGACAGCGACCCATCGACGCTGCC
ACAGACTGCGATCCGCGCGCTTGCTACGACAGCTTCTGTAAGCACTGGCA
GCAGGCCTTCGAGATCATCCAGCACAGTGCACCGCCCTCGCACGACGACG
TGCTGGGCGTGGTCTCGCACTTGGACTACATGGTCACCCTGCTGCTCGTG
GAGCTGCATCACTGCAACAAAGTCTCGCTGCCGGCGGCCGAGGCTAGTGG
TCCGCCTGCGGCGCCCTGCCTGGAATTCCTGCTCAGCGAGAATCTGCTGG
ACAAGCTGTACGAGTGGGCCTGCACCACGGGACGGTATGCCAACGCTGTG
AGGCTGGAGCAGCTGAAGCTGTACGAACTGCTCGTCAGCCACTCGCGCCA
CCAGCTGCTCTGCCACGAGCCCTTCCTGCGACCCCTGCTCAAGATACTGG
CATCCAGCCAGGGCGAGATCTTTCCGCCCGATCTCGAGAAGCGCCTGGTG
ATCCTGCTGAACCAGCTGTGCGTGGTTCTTATGCAGAATGTCCACCTGCT
GGACCTCTTTTTCTTCTCCGCCCAGACGCAGGTGCAGGAGCAGATATTAA
ATGGCAACGTGGCGCCACCCAAAAGCGGAACCACTACCAACTTCATAATA
TTTTCGCTGCTTATCCCGTACGTGCATCGCGAAGGCAGTCTTGGTCACCA
AGCGCGCGATGCTCTGCTGCTGTGCATGGCGCTTTCGCAGAAGAACTCCA
ACATTGGAACGTACATAGCCCAGTACTCCTCGATC

BS16740.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:11:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3558-PA 3126 CG3558-RA 1..819 17..835 4095 100 Plus
CG3558-PB 3087 CG3558-RB 1..819 17..835 4095 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3558-RD 4221 CG3558-RD 633..1451 17..835 4095 100 Plus
CG3558-RC 4255 CG3558-RC 628..1446 17..835 4095 100 Plus
CG3558-RB 4160 CG3558-RB 596..1414 17..835 4095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2993735..2994408 17..690 3370 100 Plus
2L 23513712 2L 2994674..2994818 691..835 725 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:12:32 has no hits.

BS16740.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:11:14 Download gff for BS16740.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3558-PB 1..819 17..835 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:31:25 Download gff for BS16740.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3558-RB 596..1414 17..835 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:23 Download gff for BS16740.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3558-RB 596..1414 17..835 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:23 Download gff for BS16740.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2993735..2994408 17..690 100 -> Plus
2L 2994674..2994818 691..835 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:31:25 Download gff for BS16740.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2993735..2994408 17..690 100 -> Plus
arm_2L 2994674..2994818 691..835 100   Plus

BS16740.pep Sequence

Translation from 16 to 3141

> BS16740.pep
MWLRQSSGGGVASVGHVGPLRQRPIDAATDCDPRACYDSFCKHWQQAFEI
IQHSAPPSHDDVLGVVSHLDYMVTLLLVELHHCNKVSLPAAEASGPPAAP
CLEFLLSENLLDKLYEWACTTGRYANAVRLEQLKLYELLVSHSRHQLLCH
EPFLRPLLKILASSQGEIFPPDLEKRLVILLNQLCVVLMQNVHLLDLFFF
SAQTQVQEQILNGNVAPPKSGTTTNFIIFSLLIPYVHREGSLGHQARDAL
LLCMALSQKNSNIGTYIAQYSSICPLLVTGLGGLYSRLPNSIEISSIDWH
RITPDDVTEIPELTLFMNALEFCNAVVQVAHEMIKQQLLDFMYQGFIVPV
LGPAILQTNIDSQISAMSYLDLILRSITEPGLLRAFVRFLLDTEKFDGER
ILDALVERLNSPDANLCMVTMALFDTLLGLHCEDLMLELLLKFMLPGKHV
PISHRHKINKIDPYLNSSEFFLELSPDVMKRARDLARPKSVHEPVVSELT
PLPSLPSPVMSKTIGANWNYYGVHTGDSLYANIQAYLFEAHWRIAQCQKD
CLKWANSYRYQKWPRHGQGRVHAHALELARQFFSEFGGGPIAANETGEKQ
LDSLQSIGESSGYESFKWRPADEESEATDTTVATTASEADMDHNSSSLSS
VLGASGKRESWRTSNSNRNELILTDLDFSEDLFAQGTVSLGPFLNAIWGK
LQTFTSNSLYVNLHLTGLITRLAWYPLPLIHSLLLRSDIAITSDTPSFHQ
VLRILKQQIDAELPVTEDSLEIIDVARSSLIDREFRLANARKGNEGSPMH
HSQQQQMVTNSGQQQGQLRSAYATLSAATPVQATPTSAYDPFKRSDNKRR
SISKSITSMFSRKSASTSTAPPNGSSASSGLSQIYAFFTGAASNLVGNNA
SNDGRGISQAQTSAGTCETSLSTQPPAGASRTGANATSTAASGSNSSIAG
STLTLSAQSNTTTHSASTLHGLDGGPSTGGFNSEPASLDSVASMGIIAST
SGTERSRDLALCAVLMDEWLKELAAIAQEQSVVLVTEQGSL*

BS16740.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3558-PA 1041 CG3558-PA 1..1041 1..1041 5352 100 Plus
CG3558-PC 1049 CG3558-PC 1..1049 1..1041 5333 99.2 Plus
CG3558-PB 1028 CG3558-PB 1..1028 1..1041 5265 98.8 Plus
CG3558-PD 1036 CG3558-PD 1..1036 1..1041 5246 98 Plus