Clone BS16746 Report

Search the DGRC for BS16746

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:167
Well:46
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS16746.pep: validated full length
Sequenced Size:16

Clone Sequence Records

BS16746.5prime Sequence

507 bp (507 high quality bases) assembled on 2007-05-15

> BS16746.5prime
GAAGTTATCAGTCGACATGCCTTTCTATATAGCGCTGTTTAAATGTTTTA
CTTACTATAACACAAAATTTATAATAGCTTTTCGATCCACATCCTTTTAC
ATCTCAATTCGCTTTCTTTGCGCTTTCGCAGTTCCCTTTTTCCATGTTAA
CCCTTTTGGACAGCTGTGGCCTTTCCCTGTTATTCAGCAGTTGGAGTTGA
TAAATTTGTCTGATTTGTGGCCGGCTTTATGCCCTCTTCTTGTTTTCCTT
TCTATTACCAACTCCCTGGGCTGCCAACTCATGCTCGCCATCCTCATTTC
CCCCAGCAAACACTTAACTCATTCGCAATATGCTGCCAAAATCTCAGTTG
GCAAGCCACTAACTCATCTGCTCCCTCCGCGTTTTTCCGCCCATTTTCCT
CATCTTGTTTTTTTTTCCCAATTTGATGCTGACGACGTGGAAAAATGTTT
GGTAATTATTCCGAATTTGGATAATTACAATGGCGCATGCTAAAAGCTTT
CTAGACC

BS16746.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG15316-PB 477 CG15316-RB 1..477 17..493 2385 100 Plus
CG15316-PA 477 CG15316-RA 1..477 17..493 2385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-13 12:00:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9423980..9424458 495..17 2395 100 Minus
Blast to na_te.dros performed 2015-02-13 12:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 6331..6403 156..83 124 64.9 Minus

BS16746.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:11:18 Download gff for BS16746.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15316-PA 1..477 17..493 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:21:50 Download gff for BS16746.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9423976..9424461 14..499 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:21:50 Download gff for BS16746.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9423976..9424461 14..499 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:56:13 Download gff for BS16746.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9318009..9318494 14..499 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:56:13 Download gff for BS16746.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9318009..9318494 14..499 99   Minus

BS16746.3prime Sequence

507 bp (507 high quality bases) assembled on 2007-05-15

> BS16746.3prime
ATGGTCTAGAAAGCTTTTACCATGCGCCATTGTAATTATCCAAATTCGGA
ATAATTACCAAACATTTTTCCACGTCGTCAGCATCAAATTGGGAAAAAAA
AACAAGATGAGGAAAATGGGCGGAAAAACGCGGAGGGAGCAGATGAGTTA
GTGGCTTGCCAACTGAGATTTTGGCAGCATATTGCGAATGAGTTAAGTGT
TTGCTGGGGGAAATGAGGATGGCGAGCATGAGTTGGCAGCCCAGGGAGTT
GGTAATAGAAAGGAAAACAAGAAGAGGGCATAAAGCCGGCCACAAATCAG
ACAAATTTATCAACTCCAACTGCTGAATAACAGGGAAAGGCCACAGCTGT
CCAAAAGGGTTAACATGGAAAAAGGGAACTGCGAAAGCGCAAAGAAAGCG
AATTGAGATGTAAAAGGATGTGGATCGAAAAGCTATTATAAATTTTGTGT
TATAGTAAGTAAAACATTTAAACAGCGCTATATAGAAAGGCATGTCGACT
GATAACT

BS16746.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG15316-PB 477 CG15316-RB 1..473 493..21 2365 100 Minus
CG15316-PA 477 CG15316-RA 1..473 493..21 2365 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-13 00:15:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:15:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9423980..9424458 15..493 2380 99.8 Plus
Blast to na_te.dros performed 2015-02-13 00:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 6331..6403 354..427 124 64.9 Plus

BS16746.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:16:41 Download gff for BS16746.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15316-PA 1..477 17..493 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:39:41 Download gff for BS16746.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9423976..9424461 11..496 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:39:41 Download gff for BS16746.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9423976..9424461 11..496 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:54:48 Download gff for BS16746.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9318009..9318494 11..496 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:54:48 Download gff for BS16746.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9318009..9318494 11..496 99   Plus

BS16746.complete Sequence

509 bp assembled on 2007-05-07

> BS16746.complete
GAAGTTATCAGTCGACATGCCTTTCTATATAGCGCTGTTTAAATGTTTTA
CTTACTATAACACAAAATTTATAATAGCTTTTCGATCCACATCCTTTTAC
ATCTCAATTCGCTTTCTTTGCGCTTTCGCAGTTCCCTTTTTCCATGTTAA
CCCTTTTGGACAGCTGTGGCCTTTCCCTGTTATTCAGCAGTTGGAGTTGA
TAAATTTGTCTGATTTGTGGCCGGCTTTATGCCCTCTTCTTGTTTTCCTT
TCTATTACCAACTCCCTGGGCTGCCAACTCATGCTCGCCATCCTCATTTC
CCCCAGCAAACACTTAACTCATTCGCAATATGCTGCCAAAATCTCAGTTG
GCAAGCCACTAACTCATCTGCTCCCTCCGCGTTTTTCCGCCCATTTTCCT
CATCTTGTTTTTTTTTCCCAATTTGATGCTGACGACGTGGAAAAATGTTT
GGTAATTATTCCGAATTTGGATAATTACAATGGCGCATGCTAAAAGCTTT
CTAGACCAT

BS16746.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 14:25:32 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 14:25:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9423980..9424458 495..17 2395 100 Minus
Blast to na_te.dros performed 2014-11-27 14:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 6331..6403 156..83 124 64.9 Minus

BS16746.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:12 Download gff for BS16746.complete
Subject Subject Range Query Range Percent Splice Strand
CG32138-RC 1993..2013 217..237 95   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:19 Download gff for BS16746.complete
Subject Subject Range Query Range Percent Splice Strand
CG34339-RB 1878..2363 14..499 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:13 Download gff for BS16746.complete
Subject Subject Range Query Range Percent Splice Strand
CG34339-RB 1878..2363 14..499 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:14 Download gff for BS16746.complete
Subject Subject Range Query Range Percent Splice Strand
X 9423984..9424458 17..491 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:14 Download gff for BS16746.complete
Subject Subject Range Query Range Percent Splice Strand
X 9423984..9424458 17..491 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:42 Download gff for BS16746.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9318017..9318491 17..491 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:42 Download gff for BS16746.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9318017..9318491 17..491 100   Minus

BS16746.pep Sequence

Translation from 16 to 492

> BS16746.pep
MPFYIALFKCFTYYNTKFIIAFRSTSFYISIRFLCAFAVPFFHVNPFGQL
WPFPVIQQLELINLSDLWPALCPLLVFLSITNSLGCQLMLAILISPSKHL
THSQYAAKISVGKPLTHLLPPRFSAHFPHLVFFSQFDADDVEKCLVIIPN
LDNYNGAC*
Sequence BS16746.pep has no blast hits.