Clone Sequence Records
BS16746.5prime Sequence
507 bp (507 high quality bases) assembled on 2007-05-15
> BS16746.5prime
GAAGTTATCAGTCGACATGCCTTTCTATATAGCGCTGTTTAAATGTTTTA
CTTACTATAACACAAAATTTATAATAGCTTTTCGATCCACATCCTTTTAC
ATCTCAATTCGCTTTCTTTGCGCTTTCGCAGTTCCCTTTTTCCATGTTAA
CCCTTTTGGACAGCTGTGGCCTTTCCCTGTTATTCAGCAGTTGGAGTTGA
TAAATTTGTCTGATTTGTGGCCGGCTTTATGCCCTCTTCTTGTTTTCCTT
TCTATTACCAACTCCCTGGGCTGCCAACTCATGCTCGCCATCCTCATTTC
CCCCAGCAAACACTTAACTCATTCGCAATATGCTGCCAAAATCTCAGTTG
GCAAGCCACTAACTCATCTGCTCCCTCCGCGTTTTTCCGCCCATTTTCCT
CATCTTGTTTTTTTTTCCCAATTTGATGCTGACGACGTGGAAAAATGTTT
GGTAATTATTCCGAATTTGGATAATTACAATGGCGCATGCTAAAAGCTTT
CTAGACC
BS16746.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:11:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15316-PB | 477 | CG15316-RB | 1..477 | 17..493 | 2385 | 100 | Plus |
CG15316-PA | 477 | CG15316-RA | 1..477 | 17..493 | 2385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-13 12:00:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:00:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9423980..9424458 | 495..17 | 2395 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 12:00:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 6331..6403 | 156..83 | 124 | 64.9 | Minus |
BS16746.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:11:18 Download gff for
BS16746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15316-PA | 1..477 | 17..493 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:21:50 Download gff for
BS16746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9423976..9424461 | 14..499 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:21:50 Download gff for
BS16746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9423976..9424461 | 14..499 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:56:13 Download gff for
BS16746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9318009..9318494 | 14..499 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:56:13 Download gff for
BS16746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9318009..9318494 | 14..499 | 99 | | Minus |
BS16746.3prime Sequence
507 bp (507 high quality bases) assembled on 2007-05-15
> BS16746.3prime
ATGGTCTAGAAAGCTTTTACCATGCGCCATTGTAATTATCCAAATTCGGA
ATAATTACCAAACATTTTTCCACGTCGTCAGCATCAAATTGGGAAAAAAA
AACAAGATGAGGAAAATGGGCGGAAAAACGCGGAGGGAGCAGATGAGTTA
GTGGCTTGCCAACTGAGATTTTGGCAGCATATTGCGAATGAGTTAAGTGT
TTGCTGGGGGAAATGAGGATGGCGAGCATGAGTTGGCAGCCCAGGGAGTT
GGTAATAGAAAGGAAAACAAGAAGAGGGCATAAAGCCGGCCACAAATCAG
ACAAATTTATCAACTCCAACTGCTGAATAACAGGGAAAGGCCACAGCTGT
CCAAAAGGGTTAACATGGAAAAAGGGAACTGCGAAAGCGCAAAGAAAGCG
AATTGAGATGTAAAAGGATGTGGATCGAAAAGCTATTATAAATTTTGTGT
TATAGTAAGTAAAACATTTAAACAGCGCTATATAGAAAGGCATGTCGACT
GATAACT
BS16746.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:16:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15316-PB | 477 | CG15316-RB | 1..473 | 493..21 | 2365 | 100 | Minus |
CG15316-PA | 477 | CG15316-RA | 1..473 | 493..21 | 2365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-13 00:15:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:15:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9423980..9424458 | 15..493 | 2380 | 99.8 | Plus |
Blast to na_te.dros performed 2015-02-13 00:15:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 6331..6403 | 354..427 | 124 | 64.9 | Plus |
BS16746.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:16:41 Download gff for
BS16746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15316-PA | 1..477 | 17..493 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:39:41 Download gff for
BS16746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9423976..9424461 | 11..496 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:39:41 Download gff for
BS16746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9423976..9424461 | 11..496 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:54:48 Download gff for
BS16746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9318009..9318494 | 11..496 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:54:48 Download gff for
BS16746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9318009..9318494 | 11..496 | 99 | | Plus |
BS16746.complete Sequence
509 bp assembled on 2007-05-07
> BS16746.complete
GAAGTTATCAGTCGACATGCCTTTCTATATAGCGCTGTTTAAATGTTTTA
CTTACTATAACACAAAATTTATAATAGCTTTTCGATCCACATCCTTTTAC
ATCTCAATTCGCTTTCTTTGCGCTTTCGCAGTTCCCTTTTTCCATGTTAA
CCCTTTTGGACAGCTGTGGCCTTTCCCTGTTATTCAGCAGTTGGAGTTGA
TAAATTTGTCTGATTTGTGGCCGGCTTTATGCCCTCTTCTTGTTTTCCTT
TCTATTACCAACTCCCTGGGCTGCCAACTCATGCTCGCCATCCTCATTTC
CCCCAGCAAACACTTAACTCATTCGCAATATGCTGCCAAAATCTCAGTTG
GCAAGCCACTAACTCATCTGCTCCCTCCGCGTTTTTCCGCCCATTTTCCT
CATCTTGTTTTTTTTTCCCAATTTGATGCTGACGACGTGGAAAAATGTTT
GGTAATTATTCCGAATTTGGATAATTACAATGGCGCATGCTAAAAGCTTT
CTAGACCAT
BS16746.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 14:25:32 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 14:25:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9423980..9424458 | 495..17 | 2395 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:25:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 6331..6403 | 156..83 | 124 | 64.9 | Minus |
BS16746.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:12 Download gff for
BS16746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32138-RC | 1993..2013 | 217..237 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:19 Download gff for
BS16746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34339-RB | 1878..2363 | 14..499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:13 Download gff for
BS16746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34339-RB | 1878..2363 | 14..499 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:14 Download gff for
BS16746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9423984..9424458 | 17..491 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:14 Download gff for
BS16746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9423984..9424458 | 17..491 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:42 Download gff for
BS16746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9318017..9318491 | 17..491 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:42 Download gff for
BS16746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9318017..9318491 | 17..491 | 100 | | Minus |
BS16746.pep Sequence
Translation from 16 to 492
> BS16746.pep
MPFYIALFKCFTYYNTKFIIAFRSTSFYISIRFLCAFAVPFFHVNPFGQL
WPFPVIQQLELINLSDLWPALCPLLVFLSITNSLGCQLMLAILISPSKHL
THSQYAAKISVGKPLTHLLPPRFSAHFPHLVFFSQFDADDVEKCLVIIPN
LDNYNGAC*
Sequence BS16746.pep has no blast hits.