Clone Sequence Records
BS16752.3prime Sequence
849 bp (742 high quality bases) assembled on 2007-05-15
> BS16752.3prime
ATGGTCTAGAAAGCTTTCACCCGGCCACCTCCTCGCTGACAAAATCCAGC
TTGACCACCTCTGCGGGCAGGCACTCCTCCACGTCCACCTCGTTCTCCTG
GACATTGATGCGATTGAGGGTCATGGACACGTCTGGTCCGCACTTTAAGC
CTGCTGGCGCCCCTGCTGGCGATCCTACTGTCGCCGCTGCCGCTGGAGGA
TTGGAGGTGCTAACCACATCGTCGGCAATCACCACCGTGGGCGAGAGTAC
TGTTGGAACAGTGGACACTGCCGACACAACGGGCACCACGATCTGCGTCG
ACGAGCAGGTGGACACCATATGTGGCTGCTGCACCACTGTCGCCGTAGTC
GAAGTGGGCTGCTGGATAATGATGTTCTCCGTGATGGTGGGCGTGTTGTT
GGCCGTCGAGGCTGCAGCCTGGGCTGCCGCTAATGCCGCAGCCTTCTGCA
TCTGCTGGTACTGCTTAACAGTCACCGTCGTGCCCGTCGTAGTTGTATTA
GACTGTGGATGCAGGATGATCTGCTTTGGCTGCGCCACCAGCTGTACGTG
CTGCACGATTGGCTGTGACTTGAATACTTGAGGAGGTGGCTGCTGAAGGG
GCTGCTGCGGCTGCTGTTGTGGCAGCGTCTGGAGAACGTGTTGCACCTGC
TGGACGGGCACTTGCTTGGCGGGAATGCCGGCGTCCTCGAAGGCCTTCTT
CTTCAGCGCCTGGCGGATCTGAGAACCCGATGGCGACTCCGCATTGGGAT
GCAGCTGCATGGTTAGATCGCCCAGTCTGCTGAACGCCTGTCCGGCGGCC
GTGAATATCTCCCCCACCTTGATTGCCGAGTTCATGTCGACTGATAACT
BS16752.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:16:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33695-PC | 819 | CG33695-RC | 1..819 | 835..17 | 4095 | 100 | Minus |
CG33695-PD | 825 | CG33695-RD | 23..825 | 819..17 | 4015 | 100 | Minus |
CG33695-PA | 918 | CG33695-RA | 210..918 | 725..17 | 3545 | 100 | Minus |
CG33695-PE | 918 | CG33695-RE | 210..918 | 725..17 | 3545 | 100 | Minus |
CG33695-PF | 843 | CG33695-RF | 135..843 | 725..17 | 3545 | 100 | Minus |
CG33695-PA | 918 | CG33695-RA | 1..110 | 835..726 | 550 | 100 | Minus |
CG33695-PE | 918 | CG33695-RE | 1..110 | 835..726 | 550 | 100 | Minus |
CG33695-PF | 843 | CG33695-RF | 1..35 | 760..726 | 175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:16:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33695-RC | 1430 | CG33695-RC | 92..911 | 836..17 | 4100 | 100 | Minus |
CG33695-RD | 1300 | CG33695-RD | 114..916 | 819..17 | 4015 | 100 | Minus |
CG33695-RE | 1394 | CG33695-RE | 302..1010 | 725..17 | 3545 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:16:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11278754..11279463 | 726..17 | 3550 | 100 | Minus |
2L | 23513712 | 2L | 11278392..11278485 | 819..726 | 470 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 00:16:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7028 | 651..345 | 198 | 55.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6939 | 652..522 | 169 | 58.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6941 | 626..408 | 163 | 58.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2373 | 652..589 | 140 | 68.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6827 | 652..586 | 137 | 67.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2860 | 652..579 | 136 | 64.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2602 | 631..321 | 135 | 54 | Minus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 92..194 | 689..589 | 132 | 60.2 | Minus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9122..9224 | 689..589 | 132 | 60.2 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1067..1108 | 631..590 | 129 | 78.6 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1091..1168 | 652..576 | 126 | 64.1 | Minus |
BS16752.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:17:00 Download gff for
BS16752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-PC | 1..819 | 17..835 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:54:55 Download gff for
BS16752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-RC | 88..915 | 11..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:42:18 Download gff for
BS16752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-RC | 88..915 | 11..842 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:42:18 Download gff for
BS16752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11278394..11278485 | 726..817 | 100 | -> | Minus |
2L | 11278755..11279467 | 11..725 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:54:55 Download gff for
BS16752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11278394..11278485 | 726..817 | 100 | -> | Minus |
arm_2L | 11278755..11279467 | 11..725 | 99 | | Minus |
BS16752.5prime Sequence
849 bp (759 high quality bases) assembled on 2007-05-15
> BS16752.5prime
GAAGTTATCAGTCGACATGAACTCGGCAATCAAGGTGGGGGAGATATTCA
CGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGATCTAACCATGCAGCTG
CATCCCAATGCGGAGTCGCCATCGGGTTCTCAGATCCGCCAGGCGCTGAA
GAAGAAGGCCTTCGAGGACGCCGGCATTCCCGCCAAGCAAGTGCCCGTCC
AGCAGGTGCAACACGTTCTCCAGACGCTGCCACAACAGCAGCCGCAGCAG
CCCCTTCAGCAGCCACCTCCTCAAGTATTCAAGTCACAGCCAATCGTGCA
GCACGTACAGCTGGTGGCGCAGCCAAAGCAGATCATCCTGCATCCACAGT
CTAATACAACTACGACGGGCACGACGGTGACTGTTAAGCAGTACCAGCAG
ATGCAGAAGGCTGCGGCATTAGCGGCAGCCCAGGCTGCAGCCTCGACGGC
CAACAACACGCCCACCATCACGGAGAACATCATTATCCAGCAGCCCACTT
CGACTACGGCGACAGTGGTGCAGCAGCCACATATGGTGTCCACCTGCTCG
TCGACGCAGATCGTGGTGCCCGTTGTGTCGGCAGTGTCCACTGTTCCAAC
AGTACTCTCGCCCACGGTGGTGATTGCCGACGATGTGGTTAGCACCTCCA
ATCCTCCAGCGGCAGCGGCGACAGTAGGATCGCCAGCAGGGGCGCCAGCA
GGCTTAAAGTGCGGACCAGACGTGTCCATGACCCTCAATCGCATCAATGT
CCAGGAGAACGAGGTGGACGTGGAGGAGTGCCTGCCCGCAGAGGTGGTCA
AGCTGGATTTTGTCAGCGAGGAGGTGGCCGGGTGAAAGCTTTCTAGACC
BS16752.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:11:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33695-PC | 819 | CG33695-RC | 1..819 | 17..835 | 4095 | 100 | Plus |
CG33695-PD | 825 | CG33695-RD | 23..825 | 33..835 | 4015 | 100 | Plus |
CG33695-PA | 918 | CG33695-RA | 210..918 | 127..835 | 3545 | 100 | Plus |
CG33695-PE | 918 | CG33695-RE | 210..918 | 127..835 | 3545 | 100 | Plus |
CG33695-PF | 843 | CG33695-RF | 135..843 | 127..835 | 3545 | 100 | Plus |
CG33695-PA | 918 | CG33695-RA | 1..110 | 17..126 | 550 | 100 | Plus |
CG33695-PE | 918 | CG33695-RE | 1..110 | 17..126 | 550 | 100 | Plus |
CG33695-PF | 843 | CG33695-RF | 1..35 | 92..126 | 175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:57:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33695-RC | 1430 | CG33695-RC | 92..911 | 16..835 | 4100 | 100 | Plus |
CG33695-RD | 1300 | CG33695-RD | 114..916 | 33..835 | 4015 | 100 | Plus |
CG33695-RE | 1394 | CG33695-RE | 302..1010 | 127..835 | 3545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:56:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11278754..11279463 | 126..835 | 3550 | 100 | Plus |
2L | 23513712 | 2L | 11278392..11278485 | 33..126 | 470 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 06:57:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7028 | 201..507 | 198 | 55.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6939 | 200..330 | 169 | 58.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6941 | 226..444 | 163 | 58.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2373 | 200..263 | 140 | 68.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6827 | 200..266 | 137 | 67.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2860 | 200..273 | 136 | 64.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2602 | 221..531 | 135 | 54 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9122..9224 | 163..263 | 132 | 60.2 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 92..194 | 163..263 | 132 | 60.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1067..1108 | 221..262 | 129 | 78.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1091..1168 | 200..276 | 126 | 64.1 | Plus |
BS16752.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:11:37 Download gff for
BS16752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-PC | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:24:54 Download gff for
BS16752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-RC | 88..915 | 10..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:23:45 Download gff for
BS16752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-RC | 88..915 | 10..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:23:45 Download gff for
BS16752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11278394..11278485 | 35..126 | 100 | -> | Plus |
2L | 11278755..11279467 | 127..841 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:24:54 Download gff for
BS16752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11278394..11278485 | 35..126 | 100 | -> | Plus |
arm_2L | 11278755..11279467 | 127..841 | 99 | | Plus |
BS16752.complete Sequence
851 bp assembled on 2007-05-07
GenBank Submission: FJ638187
> BS16752.complete
GAAGTTATCAGTCGACATGAACTCGGCAATCAAGGTGGGGGAGATATTCA
CGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGATCTAACCATGCAGCTG
CATCCCAATGCGGAGTCGCCATCGGGTTCTCAGATCCGCCAGGCGCTGAA
GAAGAAGGCCTTCGAGGACGCCGGCATTCCCGCCAAGCAAGTGCCCGTCC
AGCAGGTGCAACACGTTCTCCAGACGCTGCCACAACAGCAGCCGCAGCAG
CCCCTTCAGCAGCCACCTCCTCAAGTATTCAAGTCACAGCCAATCGTGCA
GCACGTACAGCTGGTGGCGCAGCCAAAGCAGATCATCCTGCATCCACAGT
CTAATACAACTACGACGGGCACGACGGTGACTGTTAAGCAGTACCAGCAG
ATGCAGAAGGCTGCGGCATTAGCGGCAGCCCAGGCTGCAGCCTCGACGGC
CAACAACACGCCCACCATCACGGAGAACATCATTATCCAGCAGCCCACTT
CGACTACGGCGACAGTGGTGCAGCAGCCACATATGGTGTCCACCTGCTCG
TCGACGCAGATCGTGGTGCCCGTTGTGTCGGCAGTGTCCACTGTTCCAAC
AGTACTCTCGCCCACGGTGGTGATTGCCGACGATGTGGTTAGCACCTCCA
ATCCTCCAGCGGCAGCGGCGACAGTAGGATCGCCAGCAGGGGCGCCAGCA
GGCTTAAAGTGCGGACCAGACGTGTCCATGACCCTCAATCGCATCAATGT
CCAGGAGAACGAGGTGGACGTGGAGGAGTGCCTGCCCGCAGAGGTGGTCA
AGCTGGATTTTGTCAGCGAGGAGGTGGCCGGGTGAAAGCTTTCTAGACCA
T
BS16752.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:34:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33695-RC | 819 | CG33695-PC | 1..819 | 17..835 | 4095 | 100 | Plus |
CG33695-RD | 825 | CG33695-PD | 23..825 | 33..835 | 4015 | 100 | Plus |
CG33695-RE | 918 | CG33695-PE | 210..918 | 127..835 | 3545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:34:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33695-RC | 1430 | CG33695-RC | 92..911 | 16..835 | 4100 | 100 | Plus |
CG33695-RD | 1300 | CG33695-RD | 114..916 | 33..835 | 4015 | 100 | Plus |
CG33695-RE | 1394 | CG33695-RE | 302..1010 | 127..835 | 3545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:34:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11278754..11279463 | 126..835 | 3550 | 100 | Plus |
2L | 23513712 | 2L | 11278392..11278485 | 33..126 | 470 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 10:34:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7028 | 201..507 | 198 | 55.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6939 | 200..330 | 169 | 58.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6941 | 226..444 | 163 | 58.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2373 | 200..263 | 140 | 68.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6827 | 200..266 | 137 | 67.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2860 | 200..273 | 136 | 64.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2602 | 221..531 | 135 | 54 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 92..194 | 163..263 | 132 | 60.2 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9122..9224 | 163..263 | 132 | 60.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1067..1108 | 221..262 | 129 | 78.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1091..1168 | 200..276 | 126 | 64.1 | Plus |
BS16752.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:14 Download gff for
BS16752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-RC | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:21 Download gff for
BS16752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-RC | 86..913 | 10..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:10 Download gff for
BS16752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-RC | 93..910 | 17..834 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:15 Download gff for
BS16752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-RC | 86..913 | 10..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:33 Download gff for
BS16752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-RC | 93..910 | 17..834 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:33 Download gff for
BS16752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11278113..11278130 | 17..34 | 100 | -> | Plus |
2L | 11278394..11278485 | 35..126 | 100 | -> | Plus |
2L | 11278755..11279462 | 127..834 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:10 Download gff for
BS16752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11278394..11278485 | 35..126 | 100 | -> | Plus |
arm_2L | 11278113..11278130 | 17..34 | 100 | -> | Plus |
arm_2L | 11278755..11279462 | 127..834 | 100 | | Plus |
BS16752.pep Sequence
Translation from 16 to 834
> BS16752.pep
MNSAIKVGEIFTAAGQAFSRLGDLTMQLHPNAESPSGSQIRQALKKKAFE
DAGIPAKQVPVQQVQHVLQTLPQQQPQQPLQQPPPQVFKSQPIVQHVQLV
AQPKQIILHPQSNTTTTGTTVTVKQYQQMQKAAALAAAQAAASTANNTPT
ITENIIIQQPTSTTATVVQQPHMVSTCSSTQIVVPVVSAVSTVPTVLSPT
VVIADDVVSTSNPPAAAATVGSPAGAPAGLKCGPDVSMTLNRINVQENEV
DVEECLPAEVVKLDFVSEEVAG*
BS16752.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33695-PC | 272 | CG33695-PC | 1..272 | 1..272 | 1357 | 100 | Plus |
CG33695-PD | 274 | CG33695-PD | 7..274 | 5..272 | 1332 | 99.3 | Plus |
CG33695-PE | 305 | CG33695-PE | 1..305 | 1..272 | 1313 | 89.2 | Plus |
CG33695-PF | 280 | CG33695-PF | 1..280 | 26..272 | 1192 | 88.2 | Plus |