Clone Sequence Records
BS16759.3prime Sequence
896 bp (801 high quality bases) assembled on 2007-05-15
> BS16759.3prime
ATGGTCTAGAAAGCTTTTAGTGGTCCAAGATGCGCATATTGCCAGATACA
ATCTTGTTCTCCAGAATGGCTCCAGCTGGGATATCGATACGATCGCCATG
GTTAGCAATGATGATCACAGTGCCGCGCAAAGAAACGCCACGACCGAAAG
TCACATCTCCGCTCACGGTCAAGTGATCCAGCTCAATGATGTCCGGGATG
TTGGCAAAGCGACCCAGGAACTCCTTGACCTTCGAGAAGTGGTTCTCTCC
CAGCTTGACGAGCGGCGTGGTAGGGAACATTCGCTGTGGCGACATTACCA
GGCTGCCGTTCTTAAGCGTATATAAATTTGACATGACCAGCAGCAGATCT
GAAGATTTCTTCACGGGCAAGAAACGGGAACGCGGCACATTGATGCCGAT
GGCGCCATCAAAGCACTTCATGGCCGCACCCACAGCAGTCTCCAGCTGAA
TGACACGGGTTCCGTTCTCCAGCGTCTTGTTGTTCACAATAATTTCCATG
TTTAAGGTACGCTCACGCAAAACGCGATCAATGGCTGCCAGGTTGGCCCA
AATGTTGTTGGTGTTAAAGAACTTGAAGGTCTTAACCGACTTAAAGTCAT
CCACATGCTCTGGTGGCACTTGAGCAATTTCCAACAGGCGCAGCTTGTTT
TCCATTTGAATGAGAGTACCACCCTTAACGTCAGCACGGGTCTTGTCGGT
GACCTCCATGACAAACTCCACTGGAGTAGTGGCCCGCTCCTCGCCCACCA
GCTTATTGAGGATGTTCAGATCGACGGTGGCGCCCAGGTTATCGATGTTG
GACAAGAACAATACTCGCGGCCCTCCTCGATGAACTTCTTCAGCANGCCA
GAGTTGCGGAAAGTATCGTAGAAGTCACCGTGTCCAGGTGGATACC
BS16759.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:17:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4347-PC | 1542 | UGP-RC | 751..1542 | 808..17 | 3960 | 100 | Minus |
| CG4347-PA | 1563 | UGP-RA | 772..1563 | 808..17 | 3960 | 100 | Minus |
| CG4347-PC | 1542 | UGP-RC | 662..751 | 896..807 | 406 | 97.7 | Minus |
| CG4347-PA | 1563 | UGP-RA | 683..772 | 896..807 | 406 | 97.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:21:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UGP-RE | 2686 | CG4347-RE | 930..1811 | 896..16 | 4359 | 99.7 | Minus |
| UGP-RD | 2093 | CG4347-RD | 950..1831 | 896..16 | 4359 | 99.7 | Minus |
| UGP-RA | 2102 | CG4347-RA | 936..1817 | 896..16 | 4359 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:21:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9351917..9352329 | 124..536 | 2065 | 100 | Plus |
| 3L | 28110227 | 3L | 9352601..9352825 | 673..896 | 1049 | 98.7 | Plus |
| 3L | 28110227 | 3L | 9352405..9352545 | 535..675 | 705 | 100 | Plus |
| 3L | 28110227 | 3L | 9351742..9351850 | 16..124 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:21:14 has no hits.
BS16759.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:17:09 Download gff for
BS16759.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4347-PA | 683..1563 | 17..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:30:07 Download gff for
BS16759.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RA | 936..1817 | 16..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:01:36 Download gff for
BS16759.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RA | 936..1817 | 16..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:01:36 Download gff for
BS16759.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9351742..9351850 | 16..124 | 100 | <- | Plus |
| 3L | 9351918..9352327 | 125..534 | 100 | <- | Plus |
| 3L | 9352405..9352543 | 535..673 | 100 | <- | Plus |
| 3L | 9352602..9352825 | 674..896 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:30:07 Download gff for
BS16759.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9344842..9344950 | 16..124 | 100 | <- | Plus |
| arm_3L | 9345018..9345427 | 125..534 | 100 | <- | Plus |
| arm_3L | 9345505..9345643 | 535..673 | 100 | <- | Plus |
| arm_3L | 9345702..9345925 | 674..896 | 98 | | Plus |
BS16759.5prime Sequence
866 bp (771 high quality bases) assembled on 2007-05-15
> BS16759.5prime
GAAGTTATCAGTCGACATGCTGGATGTTCCACATGAAGCTAAGGTGCGCG
GCCACCAGCGTGCACCGTCCGACTCCAAGGAGTTCCATGAGGTGACCAAA
CGGGATGCACTTCGTCTGCTGGAGCACGATGTGGACCGTCTGCTGGAGAC
CACTGAGAAGGCCCGCCAGCCTGCCCTCAAGGCAGAAATGGGTCGTTTCG
CCGATCTGTTCGGACGTTTCATTCAGGAAGAGGGTCCCGCATTGGACTGG
AACAAGATTCAGAAGCTGCCTGAGAATGCTGTGATGAACTACTCGAATCT
TAAGTCGCCCAAGAACGAGCAGAATGAGATCCGCAACATGTTGGATAAAT
TGGTGGTCATCAAGCTGAACGGTGGTTTGGGCACCTCAATGGGTTGCCAT
GGTCCCAAGAGTGTGATTCCTGTGCGTTCGGATCTTACTTTCCTGGATCT
GACCGTGCAGCAAATCGAGCATCTCAACAAGACCTACGATGCCAATGTTC
CGCTGGTACTGATGAACTCCTTTAACACCGACGAGGATACCGAGAAGATC
GTGCGCAAGTACAAAGGATTCCGTGTGCAGATCCACACCTTCAACCAGAG
CTGCTTCCCGCGCATTAGTCGCGAGCACTACCTGCCGGTGGCCAAAGACT
TTGATGTCGAAAAGGATATGGAAGCCTGGTATCCACCTGGACACGGTGAC
TTCTACGATACCTTCCGCAACTCTGGCCTGCTGAAGAAGTTCATCGAGGA
GGGCCGCGAGTATTGTTTCTTGTCCCACATCGATAACCTGNGCGCCACCG
TCGATCTGAACATCCCTCATAAGCTGGTGGGCGAAGAGCGGGCCACTACT
CCAGTGGAGTTTGTCA
BS16759.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:11:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4347-PC | 1542 | UGP-RC | 1..799 | 17..815 | 3951 | 99.7 | Plus |
| CG4347-PA | 1563 | UGP-RA | 49..820 | 44..815 | 3816 | 99.7 | Plus |
| CG4347-PC | 1542 | UGP-RC | 803..850 | 819..866 | 215 | 97.9 | Plus |
| CG4347-PA | 1563 | UGP-RA | 824..871 | 819..866 | 215 | 97.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:41:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UGP-RC | 2099 | CG4347-RC | 295..1144 | 17..866 | 4164 | 99.4 | Plus |
| UGP-RD | 2093 | CG4347-RD | 295..1138 | 17..866 | 4064 | 98.7 | Plus |
| UGP-RA | 2102 | CG4347-RA | 302..1124 | 44..866 | 4029 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:41:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9352882..9353230 | 675..327 | 1745 | 100 | Minus |
| 3L | 28110227 | 3L | 9353888..9354076 | 230..42 | 945 | 100 | Minus |
| 3L | 28110227 | 3L | 9352637..9352827 | 866..676 | 869 | 96.9 | Minus |
| 3L | 28110227 | 3L | 9353738..9353831 | 322..229 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:41:37 has no hits.
BS16759.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:11:46 Download gff for
BS16759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4347-PC | 1..849 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:01:20 Download gff for
BS16759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RC | 290..1143 | 12..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:16:22 Download gff for
BS16759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RC | 290..1143 | 12..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:16:22 Download gff for
BS16759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9352882..9353228 | 329..675 | 100 | <- | Minus |
| 3L | 9353729..9353829 | 231..328 | 96 | <- | Minus |
| 3L | 9353888..9354074 | 44..230 | 100 | <- | Minus |
| 3L | 9358615..9358646 | 12..43 | 93 | | Minus |
| 3L | 9352638..9352827 | 676..865 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:01:20 Download gff for
BS16759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9345738..9345927 | 676..865 | 97 | <- | Minus |
| arm_3L | 9345982..9346328 | 329..675 | 100 | <- | Minus |
| arm_3L | 9346829..9346929 | 231..328 | 96 | <- | Minus |
| arm_3L | 9346988..9347174 | 44..230 | 100 | <- | Minus |
| arm_3L | 9351715..9351746 | 12..43 | 93 | | Minus |
BS16759.complete Sequence
1574 bp assembled on 2007-05-07
GenBank Submission: FJ638188
> BS16759.complete
GAAGTTATCAGTCGACATGCTGGATGTTCCACATGAAGCTAAGGTGCGCG
GCCACCAGCGTGCACCGTCCGACTCCAAGGAGTTCCATGAGGTGACCAAA
CGGGATGCACTTCGTCTGCTGGAGCACGATGTGGACCGTCTGCTGGAGAC
CACTGAGAAGGCCCGCCAGCCTGCCCTCAAGGCAGAAATGGGTCGTTTCG
CCGATCTGTTCGGACGTTTCATTCAGGAAGAGGGTCCCGCATTGGACTGG
AACAAGATTCAGAAGCTGCCTGAGAATGCTGTGATGAACTACTCGAATCT
TAAGTCGCCCAAGAACGAGCAGAATGAGATCCGCAACATGTTGGATAAAT
TGGTGGTCATCAAGCTGAACGGTGGTTTGGGCACCTCAATGGGTTGCCAT
GGTCCCAAGAGTGTGATTCCTGTGCGTTCGGATCTTACTTTCCTGGATCT
GACCGTGCAGCAAATCGAGCATCTCAACAAGACCTACGATGCCAATGTTC
CGCTGGTACTGATGAACTCCTTTAACACCGACGAGGATACCGAGAAGATC
GTGCGCAAGTACAAAGGATTCCGTGTGCAGATCCACACCTTCAACCAGAG
CTGCTTCCCGCGCATTAGTCGCGAGCACTACCTGCCGGTGGCCAAAGACT
TTGATGTCGAAAAGGATATGGAAGCCTGGTATCCACCTGGACACGGTGAC
TTCTACGATACCTTCCGCAACTCTGGCCTGCTGAAGAAGTTCATCGAGGA
GGGCCGCGAGTATTGTTTCTTGTCCAACATCGATAACCTGGGCGCCACCG
TCGATCTGAACATCCTCAATAAGCTGGTGGGCGAGGAGCGGGCCACTACT
CCAGTGGAGTTTGTCATGGAGGTCACCGACAAGACCCGTGCTGACGTTAA
GGGTGGTACTCTCATTCAAATGGAAAACAAGCTGCGCCTGTTGGAAATTG
CTCAAGTGCCACCAGAGCATGTGGATGACTTTAAGTCGGTTAAGACCTTC
AAGTTCTTTAACACCAACAACATTTGGGCCAACCTGGCAGCCATTGATCG
CGTTTTGCGTGAGCGTACCTTAAACATGGAAATTATTGTGAACAACAAGA
CGCTGGAGAACGGAACCCGTGTCATTCAGCTGGAGACTGCTGTGGGTGCG
GCCATGAAGTGCTTTGATGGCGCCATCGGCATCAATGTGCCGCGTTCCCG
TTTCTTGCCCGTGAAGAAATCTTCAGATCTGCTGCTGGTCATGTCAAATT
TATATACGCTTAAGAACGGCAGCCTGGTAATGTCGCCACAGCGAATGTTC
CCTACCACGCCGCTCGTCAAGCTGGGAGAGAACCACTTCTCGAAGGTCAA
GGAGTTCCTGGGTCGCTTTGCCAACATCCCGGACATCATTGAGCTGGATC
ACTTGACCGTGAGCGGAGATGTGACTTTCGGTCGTGGCGTTTCTTTGCGC
GGCACTGTGATCATCATTGCTAACCATGGCGATCGTATCGATATCCCAGC
TGGAGCCATTCTGGAGAACAAGATTGTATCTGGCAATATGCGCATCTTGG
ACCACTAAAAGCTTTCTAGACCAT
BS16759.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UGP-RC | 1542 | CG4347-PC | 1..1542 | 17..1558 | 7710 | 100 | Plus |
| UGP-RD | 1536 | CG4347-PD | 1..1536 | 17..1558 | 7585 | 99.6 | Plus |
| UGP-RA | 1563 | CG4347-PA | 49..1563 | 44..1558 | 7575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UGP-RC | 2099 | CG4347-RC | 295..1837 | 17..1559 | 7715 | 100 | Plus |
| UGP-RD | 2093 | CG4347-RD | 295..1831 | 17..1559 | 7590 | 99.6 | Plus |
| UGP-RA | 2102 | CG4347-RA | 302..1817 | 44..1559 | 7580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9351917..9352329 | 1451..1039 | 2065 | 100 | Minus |
| 3L | 28110227 | 3L | 9352882..9353230 | 675..327 | 1745 | 100 | Minus |
| 3L | 28110227 | 3L | 9352601..9352827 | 902..676 | 1135 | 100 | Minus |
| 3L | 28110227 | 3L | 9353888..9354076 | 230..42 | 945 | 100 | Minus |
| 3L | 28110227 | 3L | 9352405..9352545 | 1040..900 | 705 | 100 | Minus |
| 3L | 28110227 | 3L | 9351742..9351850 | 1559..1451 | 545 | 100 | Minus |
| 3L | 28110227 | 3L | 9353738..9353831 | 322..229 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:00:41 has no hits.
BS16759.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:48 Download gff for
BS16759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RC | 1..1542 | 17..1558 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:54 Download gff for
BS16759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RC | 206..1753 | 12..1559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:31 Download gff for
BS16759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RC | 295..1834 | 17..1556 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:50 Download gff for
BS16759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RC | 206..1753 | 12..1559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:57 Download gff for
BS16759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RC | 295..1834 | 17..1556 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:57 Download gff for
BS16759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9351745..9351850 | 1451..1556 | 100 | <- | Minus |
| 3L | 9351918..9352327 | 1041..1450 | 100 | <- | Minus |
| 3L | 9352405..9352543 | 902..1040 | 100 | <- | Minus |
| 3L | 9352602..9352827 | 676..901 | 100 | <- | Minus |
| 3L | 9352882..9353228 | 329..675 | 100 | <- | Minus |
| 3L | 9353729..9353829 | 231..328 | 96 | <- | Minus |
| 3L | 9353888..9354074 | 44..230 | 100 | <- | Minus |
| 3L | 9358615..9358641 | 17..43 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:31 Download gff for
BS16759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9346988..9347174 | 44..230 | 100 | <- | Minus |
| arm_3L | 9351715..9351741 | 17..43 | 100 | | Minus |
| arm_3L | 9344845..9344950 | 1451..1556 | 100 | <- | Minus |
| arm_3L | 9345018..9345427 | 1041..1450 | 100 | <- | Minus |
| arm_3L | 9345505..9345643 | 902..1040 | 100 | <- | Minus |
| arm_3L | 9345702..9345927 | 676..901 | 100 | <- | Minus |
| arm_3L | 9345982..9346328 | 329..675 | 100 | <- | Minus |
| arm_3L | 9346829..9346929 | 231..328 | 96 | <- | Minus |
BS16759.pep Sequence
Translation from 16 to 1557
> BS16759.pep
MLDVPHEAKVRGHQRAPSDSKEFHEVTKRDALRLLEHDVDRLLETTEKAR
QPALKAEMGRFADLFGRFIQEEGPALDWNKIQKLPENAVMNYSNLKSPKN
EQNEIRNMLDKLVVIKLNGGLGTSMGCHGPKSVIPVRSDLTFLDLTVQQI
EHLNKTYDANVPLVLMNSFNTDEDTEKIVRKYKGFRVQIHTFNQSCFPRI
SREHYLPVAKDFDVEKDMEAWYPPGHGDFYDTFRNSGLLKKFIEEGREYC
FLSNIDNLGATVDLNILNKLVGEERATTPVEFVMEVTDKTRADVKGGTLI
QMENKLRLLEIAQVPPEHVDDFKSVKTFKFFNTNNIWANLAAIDRVLRER
TLNMEIIVNNKTLENGTRVIQLETAVGAAMKCFDGAIGINVPRSRFLPVK
KSSDLLLVMSNLYTLKNGSLVMSPQRMFPTTPLVKLGENHFSKVKEFLGR
FANIPDIIELDHLTVSGDVTFGRGVSLRGTVIIIANHGDRIDIPAGAILE
NKIVSGNMRILDH*
BS16759.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UGP-PC | 513 | CG4347-PC | 1..513 | 1..513 | 2654 | 100 | Plus |
| UGP-PD | 511 | CG4347-PD | 1..511 | 1..513 | 2630 | 99.6 | Plus |
| UGP-PA | 520 | CG4347-PA | 15..520 | 8..513 | 2608 | 99.8 | Plus |
| UGP-PE | 518 | CG4347-PE | 15..518 | 8..513 | 2584 | 99.4 | Plus |
