Clone BS16763 Report

Search the DGRC for BS16763

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:167
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG16890-RB
Protein status:BS16763.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16763.5prime Sequence

522 bp (522 high quality bases) assembled on 2007-05-15

> BS16763.5prime
GAAGTTATCAGTCGACATGAGCGGCTCGCAATTATTCCCAGTGAATCTGA
ACAACCTGAGTGCCAAGGAGCGACACAACTATATACTTAGTAATTACGTG
CTTAACCTACCGAATGAGACGGAATCACGTCGGCACAAGCGAGACATCGA
TGTAATCCGAGAGAATCACCGCTTCCTGTGGGAGGACGACGAGTTGGATA
GCGACACCCTAAGCTGGGAGCAGCGCTTGGCCCTGCGATACTACAGGAAG
CTATTTAAGGAGTACTGCATCGCGGACCTGTCCCGCTACAAGGAGAACAA
GATAGCGCTGCGCTGGCGAACGGAGCAGGAGGTGGTCACCGGAACCGGGC
AGTTCCAGTGCGGCAGCCGGCATTGCGGGGAGCGGGATAATCTGCGCAGC
TGGGAGGTAAACTTTAGGTATATCGAAAAGGGTGAGCCCCTAAATGCGCT
GGTCAAGGTGGGTTCCAAATGGGTTTCCGCGATTGTGTCACTAATGGGAA
TTCCATAGAAGCTTTCTAGACC

BS16763.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG16890-PB 492 CG16890-RB 1..492 17..508 2460 100 Plus
CG16890-PA 777 CG16890-RA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG16890-RC 1179 CG16890-RC 24..467 17..460 2220 100 Plus
CG16890-RA 831 CG16890-RA 24..467 17..460 2220 100 Plus
CG16890-RD 1184 CG16890-RD 53..472 41..460 2100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13782946..13783437 508..17 2460 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:30:12 has no hits.

BS16763.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:09:33 Download gff for BS16763.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16890-PB 1..492 17..508 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:50:23 Download gff for BS16763.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16890-RA 16..467 5..460 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:44:31 Download gff for BS16763.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16890-RA 16..467 5..460 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:44:31 Download gff for BS16763.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13782942..13783445 5..512 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:50:23 Download gff for BS16763.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13782942..13783445 5..512 98   Minus

BS16763.3prime Sequence

522 bp (522 high quality bases) assembled on 2007-05-15

> BS16763.3prime
ATGGTCTAGAAAGCTTCTATGGAATTCCCATTAGTGACACAATCGCGGAA
ACCCATTTGGAACCCACCTTGACCAGCGCATTTAGGGGCTCACCCTTTTC
GATATACCTAAAGTTTACCTCCCAGCTGCGCAGATTATCCCGCTCCCCGC
AATGCCGGCTGCCGCACTGGAACTGCCCGGTTCCGGTGACCACCTCCTGC
TCCGTTCGCCAGCGCAGCGCTATCTTGTTCTCCTTGTAGCGGGACAGGTC
CGCGATGCAGTACTCCTTAAATAGCTTCCTGTAGTATCGCAGGGCCAAGC
GCTGCTCCCAGCTTAGGGTGTCGCTATCCAACTCGTCGTCCTCCCACAGG
AAGCGGTGATTCTCTCGGATTACATCGATGTCTCGCTTGTGCCGACGTGA
TTCCGTCTCATTCGGTAGGTTAAGCACGTAATTACTAAGTATATAGTTGT
GTCGCTCCTTGGCACTCAGGTTGTTCAGATTCACTGGGAATAATTGCGAG
CCGCTCATGTCGACTGATAACT

BS16763.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG16890-PB 492 CG16890-RB 1..492 508..17 2460 100 Minus
CG16890-PA 777 CG16890-RA 1..444 508..65 2220 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG16890-RC 1179 CG16890-RC 24..467 508..65 2220 100 Minus
CG16890-RA 831 CG16890-RA 24..467 508..65 2220 100 Minus
CG16890-RD 1184 CG16890-RD 53..472 484..65 2100 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:35:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13782946..13783437 17..508 2460 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:35:36 has no hits.

BS16763.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:14:27 Download gff for BS16763.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16890-PB 1..492 17..508 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:44:22 Download gff for BS16763.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16890-RA 16..467 65..520 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:37:54 Download gff for BS16763.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16890-RA 16..467 65..520 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:37:54 Download gff for BS16763.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13782942..13783445 13..520 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:44:22 Download gff for BS16763.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13782942..13783445 13..520 98   Plus

BS16763.complete Sequence

524 bp assembled on 2007-05-07

GenBank Submission: FJ638189

> BS16763.complete
GAAGTTATCAGTCGACATGAGCGGCTCGCAATTATTCCCAGTGAATCTGA
ACAACCTGAGTGCCAAGGAGCGACACAACTATATACTTAGTAATTACGTG
CTTAACCTACCGAATGAGACGGAATCACGTCGGCACAAGCGAGACATCGA
TGTAATCCGAGAGAATCACCGCTTCCTGTGGGAGGACGACGAGTTGGATA
GCGACACCCTAAGCTGGGAGCAGCGCTTGGCCCTGCGATACTACAGGAAG
CTATTTAAGGAGTACTGCATCGCGGACCTGTCCCGCTACAAGGAGAACAA
GATAGCGCTGCGCTGGCGAACGGAGCAGGAGGTGGTCACCGGAACCGGGC
AGTTCCAGTGCGGCAGCCGGCATTGCGGGGAGCGGGATAATCTGCGCAGC
TGGGAGGTAAACTTTAGGTATATCGAAAAGGGTGAGCCCCTAAATGCGCT
GGTCAAGGTGGGTTCCAAATGGGTTTCCGCGATTGTGTCACTAATGGGAA
TTCCATAGAAGCTTTCTAGACCAT

BS16763.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG16890-RC 777 CG16890-PC 1..444 17..460 2220 100 Plus
CG16890-RA 777 CG16890-PA 1..444 17..460 2220 100 Plus
CG16890-RD 747 CG16890-PD 1..414 47..460 2070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG16890-RC 1179 CG16890-RC 24..467 17..460 2220 100 Plus
CG16890-RA 831 CG16890-RA 24..467 17..460 2220 100 Plus
CG16890-RD 1184 CG16890-RD 53..472 41..460 2100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13782946..13783437 508..17 2460 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:27:07 has no hits.

BS16763.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:53:59 Download gff for BS16763.complete
Subject Subject Range Query Range Percent Splice Strand
CG16890-RB 13..516 5..512 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:58:34 Download gff for BS16763.complete
Subject Subject Range Query Range Percent Splice Strand
CG16890-RA 24..467 17..460 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:01:29 Download gff for BS16763.complete
Subject Subject Range Query Range Percent Splice Strand
CG16890-RA 24..467 17..460 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:01:29 Download gff for BS16763.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13782946..13783437 17..508 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:58:34 Download gff for BS16763.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13782946..13783437 17..508 100   Minus

BS16763.pep Sequence

Translation from 16 to 507

> BS16763.pep
MSGSQLFPVNLNNLSAKERHNYILSNYVLNLPNETESRRHKRDIDVIREN
HRFLWEDDELDSDTLSWEQRLALRYYRKLFKEYCIADLSRYKENKIALRW
RTEQEVVTGTGQFQCGSRHCGERDNLRSWEVNFRYIEKGEPLNALVKVGS
KWVSAIVSLMGIP*

BS16763.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG16890-PC 258 CG16890-PC 1..148 1..148 793 100 Plus
CG16890-PA 258 CG16890-PA 1..148 1..148 793 100 Plus
CG16890-PD 248 CG16890-PD 1..138 11..148 740 99.3 Plus