Clone Sequence Records
BS16763.5prime Sequence
522 bp (522 high quality bases) assembled on 2007-05-15
> BS16763.5prime
GAAGTTATCAGTCGACATGAGCGGCTCGCAATTATTCCCAGTGAATCTGA
ACAACCTGAGTGCCAAGGAGCGACACAACTATATACTTAGTAATTACGTG
CTTAACCTACCGAATGAGACGGAATCACGTCGGCACAAGCGAGACATCGA
TGTAATCCGAGAGAATCACCGCTTCCTGTGGGAGGACGACGAGTTGGATA
GCGACACCCTAAGCTGGGAGCAGCGCTTGGCCCTGCGATACTACAGGAAG
CTATTTAAGGAGTACTGCATCGCGGACCTGTCCCGCTACAAGGAGAACAA
GATAGCGCTGCGCTGGCGAACGGAGCAGGAGGTGGTCACCGGAACCGGGC
AGTTCCAGTGCGGCAGCCGGCATTGCGGGGAGCGGGATAATCTGCGCAGC
TGGGAGGTAAACTTTAGGTATATCGAAAAGGGTGAGCCCCTAAATGCGCT
GGTCAAGGTGGGTTCCAAATGGGTTTCCGCGATTGTGTCACTAATGGGAA
TTCCATAGAAGCTTTCTAGACC
BS16763.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:09:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16890-PB | 492 | CG16890-RB | 1..492 | 17..508 | 2460 | 100 | Plus |
CG16890-PA | 777 | CG16890-RA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:30:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16890-RC | 1179 | CG16890-RC | 24..467 | 17..460 | 2220 | 100 | Plus |
CG16890-RA | 831 | CG16890-RA | 24..467 | 17..460 | 2220 | 100 | Plus |
CG16890-RD | 1184 | CG16890-RD | 53..472 | 41..460 | 2100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:30:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13782946..13783437 | 508..17 | 2460 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:30:12 has no hits.
BS16763.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:09:33 Download gff for
BS16763.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16890-PB | 1..492 | 17..508 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:50:23 Download gff for
BS16763.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16890-RA | 16..467 | 5..460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:44:31 Download gff for
BS16763.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16890-RA | 16..467 | 5..460 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:44:31 Download gff for
BS16763.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13782942..13783445 | 5..512 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:50:23 Download gff for
BS16763.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13782942..13783445 | 5..512 | 98 | | Minus |
BS16763.3prime Sequence
522 bp (522 high quality bases) assembled on 2007-05-15
> BS16763.3prime
ATGGTCTAGAAAGCTTCTATGGAATTCCCATTAGTGACACAATCGCGGAA
ACCCATTTGGAACCCACCTTGACCAGCGCATTTAGGGGCTCACCCTTTTC
GATATACCTAAAGTTTACCTCCCAGCTGCGCAGATTATCCCGCTCCCCGC
AATGCCGGCTGCCGCACTGGAACTGCCCGGTTCCGGTGACCACCTCCTGC
TCCGTTCGCCAGCGCAGCGCTATCTTGTTCTCCTTGTAGCGGGACAGGTC
CGCGATGCAGTACTCCTTAAATAGCTTCCTGTAGTATCGCAGGGCCAAGC
GCTGCTCCCAGCTTAGGGTGTCGCTATCCAACTCGTCGTCCTCCCACAGG
AAGCGGTGATTCTCTCGGATTACATCGATGTCTCGCTTGTGCCGACGTGA
TTCCGTCTCATTCGGTAGGTTAAGCACGTAATTACTAAGTATATAGTTGT
GTCGCTCCTTGGCACTCAGGTTGTTCAGATTCACTGGGAATAATTGCGAG
CCGCTCATGTCGACTGATAACT
BS16763.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:14:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16890-PB | 492 | CG16890-RB | 1..492 | 508..17 | 2460 | 100 | Minus |
CG16890-PA | 777 | CG16890-RA | 1..444 | 508..65 | 2220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:35:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16890-RC | 1179 | CG16890-RC | 24..467 | 508..65 | 2220 | 100 | Minus |
CG16890-RA | 831 | CG16890-RA | 24..467 | 508..65 | 2220 | 100 | Minus |
CG16890-RD | 1184 | CG16890-RD | 53..472 | 484..65 | 2100 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:35:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13782946..13783437 | 17..508 | 2460 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:35:36 has no hits.
BS16763.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:14:27 Download gff for
BS16763.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16890-PB | 1..492 | 17..508 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:44:22 Download gff for
BS16763.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16890-RA | 16..467 | 65..520 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:37:54 Download gff for
BS16763.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16890-RA | 16..467 | 65..520 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:37:54 Download gff for
BS16763.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13782942..13783445 | 13..520 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:44:22 Download gff for
BS16763.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13782942..13783445 | 13..520 | 98 | | Plus |
BS16763.complete Sequence
524 bp assembled on 2007-05-07
GenBank Submission: FJ638189
> BS16763.complete
GAAGTTATCAGTCGACATGAGCGGCTCGCAATTATTCCCAGTGAATCTGA
ACAACCTGAGTGCCAAGGAGCGACACAACTATATACTTAGTAATTACGTG
CTTAACCTACCGAATGAGACGGAATCACGTCGGCACAAGCGAGACATCGA
TGTAATCCGAGAGAATCACCGCTTCCTGTGGGAGGACGACGAGTTGGATA
GCGACACCCTAAGCTGGGAGCAGCGCTTGGCCCTGCGATACTACAGGAAG
CTATTTAAGGAGTACTGCATCGCGGACCTGTCCCGCTACAAGGAGAACAA
GATAGCGCTGCGCTGGCGAACGGAGCAGGAGGTGGTCACCGGAACCGGGC
AGTTCCAGTGCGGCAGCCGGCATTGCGGGGAGCGGGATAATCTGCGCAGC
TGGGAGGTAAACTTTAGGTATATCGAAAAGGGTGAGCCCCTAAATGCGCT
GGTCAAGGTGGGTTCCAAATGGGTTTCCGCGATTGTGTCACTAATGGGAA
TTCCATAGAAGCTTTCTAGACCAT
BS16763.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:27:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16890-RC | 777 | CG16890-PC | 1..444 | 17..460 | 2220 | 100 | Plus |
CG16890-RA | 777 | CG16890-PA | 1..444 | 17..460 | 2220 | 100 | Plus |
CG16890-RD | 747 | CG16890-PD | 1..414 | 47..460 | 2070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:27:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16890-RC | 1179 | CG16890-RC | 24..467 | 17..460 | 2220 | 100 | Plus |
CG16890-RA | 831 | CG16890-RA | 24..467 | 17..460 | 2220 | 100 | Plus |
CG16890-RD | 1184 | CG16890-RD | 53..472 | 41..460 | 2100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:27:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13782946..13783437 | 508..17 | 2460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:27:07 has no hits.
BS16763.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:53:59 Download gff for
BS16763.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16890-RB | 13..516 | 5..512 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:58:34 Download gff for
BS16763.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16890-RA | 24..467 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:01:29 Download gff for
BS16763.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16890-RA | 24..467 | 17..460 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:01:29 Download gff for
BS16763.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13782946..13783437 | 17..508 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:58:34 Download gff for
BS16763.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13782946..13783437 | 17..508 | 100 | | Minus |
BS16763.pep Sequence
Translation from 16 to 507
> BS16763.pep
MSGSQLFPVNLNNLSAKERHNYILSNYVLNLPNETESRRHKRDIDVIREN
HRFLWEDDELDSDTLSWEQRLALRYYRKLFKEYCIADLSRYKENKIALRW
RTEQEVVTGTGQFQCGSRHCGERDNLRSWEVNFRYIEKGEPLNALVKVGS
KWVSAIVSLMGIP*
BS16763.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16890-PC | 258 | CG16890-PC | 1..148 | 1..148 | 793 | 100 | Plus |
CG16890-PA | 258 | CG16890-PA | 1..148 | 1..148 | 793 | 100 | Plus |
CG16890-PD | 248 | CG16890-PD | 1..138 | 11..148 | 740 | 99.3 | Plus |