Clone BS16775 Report

Search the DGRC for BS16775

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:167
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG30479-RA
Protein status:BS16775.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16775.3prime Sequence

354 bp (354 high quality bases) assembled on 2007-05-15

> BS16775.3prime
ATGGTCTAGAAAGCTTTCACAGAATAGTGCAGCAGAAAACCTCTCCTTGC
GGCTGGGCATACACACTGGCCACCGGAGCCTGGCCACCCACCACAACGGT
GGGCCGTGGCGGCGGCATCACGACCATGGGCGGTGGTGGTGGTGCTCCGA
CGATCACAGTTGGTGGCGGTGGTGCAACCACCACGGGTGGCGGAGCAAAG
CCGATGCCCACGCCTATGGGCGGCGGACGCGGTGGTCCGCCGATATTGAT
GCCGACATTCACTCGAGGTGGCGGTGGTCCGTAGGCGATTCCGGGACCCC
GTGGAGGTGGTCCTCCGTATCCGCGTCCTGGGGGTGGCATGTCGACTGAT
AACT

BS16775.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG30479-PA 324 CG30479-RA 1..320 340..21 1600 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG30480-RB 3460 CG30480-RB 3028..3361 350..17 1625 99.1 Minus
CG30479-RB 3460 CG30479-RB 3028..3361 350..17 1625 99.1 Minus
CG30479-RA 598 CG30479-RA 25..358 350..17 1625 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14674705..14675038 17..350 1625 99.1 Plus
Blast to na_te.dros performed on 2015-02-10 21:33:55 has no hits.

BS16775.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:14:54 Download gff for BS16775.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30479-PA 1..324 17..340 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:14:58 Download gff for BS16775.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30480-RB 3024..3361 17..354 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:59:35 Download gff for BS16775.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30479-RA 21..358 17..354 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:59:35 Download gff for BS16775.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14674705..14675042 17..354 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:14:58 Download gff for BS16775.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10562210..10562547 17..354 98   Plus

BS16775.5prime Sequence

354 bp (354 high quality bases) assembled on 2007-05-15

> BS16775.5prime
GAAGTTATCAGTCGACATGCCACCCCCAGGACGCGGATACGGAGGACCAC
CTCCACGGGGTCCCGGAATCGCCTACGGACCACCGCCACCTCGAGTGAAT
GTCGGCATCAATATCGGCGGACCACCGCGTCCGCCGCCCATAGGCGTGGG
CATCGGCTTTGCTCCGCCACCCGTGGTGGTTGCACCACCGCCACCAACTG
TGATCGTCGGAGCACCACCACCACCGCCCATGGTCGTGATGCCGCCGCCA
CGGCCCACCGTTGTGGTGGGTGGCCAGGCTCCGGTGGCCAGTGTGTATGC
CCAGCCGCAAGGAGAGGTTTTCTGCTGCACTATTCTCTGAAAGCTTTCTA
GACC

BS16775.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG30479-PA 324 CG30479-RA 1..324 17..340 1620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:32:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG30480-RB 3460 CG30480-RB 3028..3361 7..340 1640 99.4 Plus
CG30479-RB 3460 CG30479-RB 3028..3361 7..340 1640 99.4 Plus
CG30479-RA 598 CG30479-RA 25..358 7..340 1640 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14674705..14675038 340..7 1640 99.4 Minus
Blast to na_te.dros performed on 2015-02-12 05:32:55 has no hits.

BS16775.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:10:00 Download gff for BS16775.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30479-PA 1..324 17..340 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:43:38 Download gff for BS16775.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30480-RB 3024..3361 3..340 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:40:43 Download gff for BS16775.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30479-RA 21..358 3..340 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:40:43 Download gff for BS16775.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14674705..14675042 3..340 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:43:38 Download gff for BS16775.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10562210..10562547 3..340 98   Minus

BS16775.complete Sequence

356 bp assembled on 2007-05-07

GenBank Submission: FJ638190

> BS16775.complete
GAAGTTATCAGTCGACATGCCACCCCCAGGACGCGGATACGGAGGACCAC
CTCCACGGGGTCCCGGAATCGCCTACGGACCACCGCCACCTCGAGTGAAT
GTCGGCATCAATATCGGCGGACCACCGCGTCCGCCGCCCATAGGCGTGGG
CATCGGCTTTGCTCCGCCACCCGTGGTGGTTGCACCACCGCCACCAACTG
TGATCGTCGGAGCACCACCACCACCGCCCATGGTCGTGATGCCGCCGCCA
CGGCCCACCGTTGTGGTGGGTGGCCAGGCTCCGGTGGCCAGTGTGTATGC
CCAGCCGCAAGGAGAGGTTTTCTGCTGCACTATTCTCTGAAAGCTTTCTA
GACCAT

BS16775.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG30479-RB 324 CG30479-PB 1..324 17..340 1620 100 Plus
CG30479-RA 324 CG30479-PA 1..324 17..340 1620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG30480-RB 3460 CG30480-RB 3028..3361 7..340 1640 99.4 Plus
CG30479-RB 3460 CG30479-RB 3028..3361 7..340 1640 99.4 Plus
CG30479-RA 598 CG30479-RA 25..358 7..340 1640 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14674705..14675038 340..7 1640 99.4 Minus
Blast to na_te.dros performed on 2014-11-27 19:47:13 has no hits.

BS16775.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:52 Download gff for BS16775.complete
Subject Subject Range Query Range Percent Splice Strand
CG30479-RA 1..324 17..340 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:55 Download gff for BS16775.complete
Subject Subject Range Query Range Percent Splice Strand
CG30479-RA 12..349 3..340 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:16 Download gff for BS16775.complete
Subject Subject Range Query Range Percent Splice Strand
CG30480-RB 3038..3360 17..339 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:53 Download gff for BS16775.complete
Subject Subject Range Query Range Percent Splice Strand
CG30479-RA 12..349 3..340 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:21 Download gff for BS16775.complete
Subject Subject Range Query Range Percent Splice Strand
CG30479-RA 35..357 17..339 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:21 Download gff for BS16775.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14674706..14675028 17..339 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:16 Download gff for BS16775.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10562211..10562533 17..339 100   Minus

BS16775.pep Sequence

Translation from 16 to 339

> BS16775.pep
MPPPGRGYGGPPPRGPGIAYGPPPPRVNVGINIGGPPRPPPIGVGIGFAP
PPVVVAPPPPTVIVGAPPPPPMVVMPPPRPTVVVGGQAPVASVYAQPQGE
VFCCTIL*

BS16775.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG30479-PB 107 CG30479-PB 1..107 1..107 606 100 Plus
CG30479-PA 107 CG30479-PA 1..107 1..107 606 100 Plus
dia-PE 1091 CG1768-PE 513..594 1..90 155 43.2 Plus
dia-PB 1091 CG1768-PB 513..594 1..90 155 43.2 Plus
dia-PA 1091 CG1768-PA 513..594 1..90 155 43.2 Plus