Clone Sequence Records
BS16777.3prime Sequence
926 bp (837 high quality bases) assembled on 2007-05-15
> BS16777.3prime
ATGGTCTAGAAAGCTTTTAGACTTCAGCCAGATTGCGAATAATCTTCTTG
TACACATCAATGCCATTAAGATACACATCAGCCTGCAGAAACTCGTCGTG
GTCATGGATCCGCATGGTGGTGTTTATAATGGGTGAGAATCCAATGGCTG
GGGTACCCTTCTCCCGAATGAAACGACTGTCAGTGGCGCCAGGACAAACG
ATGGGATGAACCTTCAATCCAAGCTCATCGATTGCGGCTTTGACAGCTAG
CCAGTAGGGATTGGAATTGTCCAGCTTGGTGGGTCCTATATAAGGCTCCT
TCTGGAAGAAATCAATTTCAATGCCACCACCCGCCTCCTCGCACCAATCG
CGAATCTGTTTCTCAAAGGCAACCACATTCACAGTAATGGCAATCCGTAT
GTCGAAGACCGCCTCGAAAAGTGGCGGAACCACATTGCTCTGGACTCCGC
CACTTAACTGGGTGAGATTCACGGTGGTCACATCGCCCTTGCTGAGGCTG
GAATCTCTCGCAAGGTTCTCCACTTGCGAGGTGCGGAATTCAGTCAGTTT
GTTGACCAGATAGTTCAGTTTTACTCCTGCCGTATTGGGTAGCAAAAGGG
AACCATGACCAGAAGTTCCACTGACTTTCAGCTTGAGTCCCCATCGCAAA
CGTTCGGCGTAGAACAAATGATGAACGTCACTTTCACTAGTGGCGCCTTC
GTCCAGGCTGAATCCCGCGTTCATTTTCTTGTAGTAATCCGTCTTAACAA
ACTCCGCCATGCCCAGATGACCACCAGTCTCTTCGTCGGGAACAAAGGTC
ACATACAAATTCCTTTTTGGTTTGAAGCACTAGCTTTCAGCANGCGAATC
GCTCCTAGATACTGAGTGCCCACCGATTTCATGTCCTGAGTACCCCGTGC
AAAGATCCTACCCTCTTCATCAATAT
BS16777.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:17:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6733-PA | 1206 | CG6733-RA | 395..1206 | 828..17 | 4060 | 100 | Minus |
CG6733-PA | 1206 | CG6733-RA | 296..394 | 926..828 | 476 | 98.9 | Minus |
CG6738-PA | 1206 | CG6738-RA | 307..385 | 915..837 | 276 | 93.6 | Minus |
CG6738-PA | 1206 | CG6738-RA | 739..797 | 484..426 | 220 | 94.9 | Minus |
CG17109-PA | 1203 | CG17109-RA | 842..899 | 378..321 | 190 | 93.1 | Minus |
CG17109-PA | 1203 | CG17109-RA | 298..353 | 921..866 | 155 | 91 | Minus |
CG6726-PB | 1206 | CG6726-RB | 852..906 | 371..317 | 150 | 90.9 | Minus |
CG6726-PA | 1206 | CG6726-RA | 852..906 | 371..317 | 150 | 90.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:54:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6733-RA | 1291 | CG6733-RA | 327..1238 | 926..16 | 4524 | 99.8 | Minus |
CG6738-RA | 1291 | CG6738-RA | 348..1246 | 915..18 | 1294 | 76.6 | Minus |
CG17109-RB | 1373 | CG17109-RB | 336..1173 | 926..90 | 1204 | 76.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:53:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23098457..23098875 | 640..222 | 2095 | 100 | Minus |
3R | 32079331 | 3R | 23098111..23098399 | 926..639 | 1384 | 99.3 | Minus |
3R | 32079331 | 3R | 23098933..23099138 | 221..16 | 1030 | 100 | Minus |
3R | 32079331 | 3R | 23096434..23096846 | 637..225 | 625 | 76.8 | Minus |
3R | 32079331 | 3R | 23100266..23100669 | 637..234 | 520 | 75.2 | Minus |
3R | 32079331 | 3R | 23099934..23100209 | 915..641 | 509 | 79.7 | Minus |
3R | 32079331 | 3R | 23092616..23092923 | 624..317 | 445 | 76.3 | Minus |
3R | 32079331 | 3R | 23096084..23096372 | 926..639 | 379 | 76.1 | Minus |
3R | 32079331 | 3R | 23100779..23100938 | 177..18 | 305 | 79.4 | Minus |
3R | 32079331 | 3R | 23094141..23094311 | 820..650 | 195 | 74.3 | Minus |
3R | 32079331 | 3R | 10676298..10676362 | 560..624 | 190 | 86.2 | Plus |
3R | 32079331 | 3R | 23096979..23097040 | 151..90 | 190 | 87.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:54:11 has no hits.
BS16777.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:17:53 Download gff for
BS16777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6733-PA | 296..1206 | 17..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:02:22 Download gff for
BS16777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6733-RA | 327..1238 | 16..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:21:41 Download gff for
BS16777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6733-RA | 327..1238 | 16..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:21:41 Download gff for
BS16777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23098111..23098398 | 640..926 | 99 | -> | Minus |
3R | 23098458..23098875 | 222..639 | 100 | -> | Minus |
3R | 23098933..23099138 | 16..221 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:02:22 Download gff for
BS16777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18923833..18924120 | 640..926 | 99 | -> | Minus |
arm_3R | 18924180..18924597 | 222..639 | 100 | -> | Minus |
arm_3R | 18924655..18924860 | 16..221 | 100 | | Minus |
BS16777.5prime Sequence
890 bp (844 high quality bases) assembled on 2007-05-15
> BS16777.5prime
GAAGTTATCAGTCGACATGAGCTCGGAAAAGTGGGAAAACAATGAGGAAA
TTAAGATTTTCCGGGAATACTTGCGTATACCAACGGTGCATCCAGATGTT
GACTATACTGCCTGTGTGGAGTTCCTGAAACGTCAGGCTAGCTCCCTAAA
TCTTCCTGTTGAAGTGGTTTATCCTGCTGTTCAAACGAAGCCCGTTGTGA
TCATCAAGTGGGAAGGAAGTCAACCCGAACTATCGTCCATTGTTCTCAAC
TCTCACACGGATGTGGTGCCAGTTTTTCGAGAGAAGTGGACCCATGAACC
CTTCTCCGCCGATATTGATGAAGAGGGTAGGATCTTTGCACGGGGTACTC
AGGACATGAAATCGGTGGGCACTCAGTATCTAGGAGCGATTCGCCTGCTG
AAAGCTAGTGGCTTCAAACCAAAAAGGAATTTGTATGTGACCTTTGTTCC
CGACGAAGAGACTGGTGGTCATCTGGGCATGGCGGAGTTTGTTAAGACGG
ATTACTACAAGAAAATGAACGCGGGATTCAGCCTGGACGAAGGCGCCACT
AGTGAAAGTGACGTTCATCATTTGTTCTACGCCGAACGTTTGCGATGGGG
ACTCAAGCTGAAAGTCAGTGGAACTTCTGGTCATGGTTCCCTTTTGCTAC
CCAATACGGCAGGAGTAAAACTGAACTATCTGGTCAACAAACTGACTGAA
TTCCGCACCTCGCAAGTGGAGAACCTTGCGAGAGATTCCAGCCTCAGCAA
GGGCGATGTGACCACCGTGAATCTCACCCAGTTAAGTGGCGGAGTCCAGA
GCAATGTGGTTCCGCCACTTTTCGAGGCGGTCTTCGACATACGGATTGGC
ATTACTGTGAATGTGGTTGCCTTTGAGAAACAGATTCGCG
BS16777.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:12:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6733-PA | 1206 | CG6733-RA | 1..874 | 17..890 | 4345 | 99.8 | Plus |
CG6738-PA | 1206 | CG6738-RA | 270..385 | 286..401 | 380 | 93.1 | Plus |
CG6738-PA | 1206 | CG6738-RA | 739..797 | 755..813 | 220 | 94.9 | Plus |
CG17109-PA | 1203 | CG17109-RA | 265..353 | 284..372 | 195 | 88.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:56:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6733-RA | 1291 | CG6733-RA | 26..905 | 11..890 | 4370 | 99.8 | Plus |
CG6738-RA | 1291 | CG6738-RA | 51..902 | 26..877 | 1305 | 77.3 | Plus |
CG17109-RB | 1373 | CG17109-RB | 44..909 | 17..885 | 1285 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:56:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23097907..23098399 | 108..600 | 2465 | 100 | Plus |
3R | 32079331 | 3R | 23098457..23098748 | 599..890 | 1445 | 99.7 | Plus |
3R | 32079331 | 3R | 23099719..23100209 | 108..598 | 820 | 77.8 | Plus |
3R | 32079331 | 3R | 23095888..23096372 | 113..600 | 635 | 75.8 | Plus |
3R | 32079331 | 3R | 23097753..23097849 | 11..107 | 470 | 99 | Plus |
3R | 32079331 | 3R | 23096434..23096717 | 602..885 | 445 | 77.1 | Plus |
3R | 32079331 | 3R | 23100266..23100541 | 602..877 | 375 | 75.7 | Plus |
3R | 32079331 | 3R | 23092616..23092891 | 615..890 | 330 | 74.6 | Plus |
3R | 32079331 | 3R | 23092184..23092479 | 236..531 | 325 | 74 | Plus |
3R | 32079331 | 3R | 10676298..10676362 | 679..615 | 190 | 86.2 | Minus |
3R | 32079331 | 3R | 23091883..23091953 | 29..99 | 190 | 84.5 | Plus |
3R | 32079331 | 3R | 23095733..23095815 | 17..99 | 190 | 81.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:56:26 has no hits.
BS16777.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:12:07 Download gff for
BS16777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6733-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:19:50 Download gff for
BS16777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6733-RA | 26..905 | 11..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:28:09 Download gff for
BS16777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6733-RA | 26..905 | 11..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:28:09 Download gff for
BS16777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23097753..23097849 | 11..107 | 98 | -> | Plus |
3R | 23097907..23098398 | 108..599 | 100 | -> | Plus |
3R | 23098458..23098748 | 600..890 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:19:50 Download gff for
BS16777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18923475..18923571 | 11..107 | 98 | -> | Plus |
arm_3R | 18923629..18924120 | 108..599 | 100 | -> | Plus |
arm_3R | 18924180..18924470 | 600..890 | 99 | | Plus |
BS16777.complete Sequence
1238 bp assembled on 2007-05-07
GenBank Submission: FJ638191
> BS16777.complete
GAAGTTATCAGTCGACATGAGCTCGGAAAAGTGGGAAAACAATGAGGAAA
TTAAGATTTTCCGGGAATACTTGCGTATACCAACGGTGCATCCAGATGTT
GACTATACTGCCTGTGTGGAGTTCCTGAAACGTCAGGCTAGCTCCCTAAA
TCTTCCTGTTGAAGTGGTTTATCCTGCTGTTCAAACGAAGCCCGTTGTGA
TCATCAAGTGGGAAGGAAGTCAACCCGAACTATCGTCCATTGTTCTCAAC
TCTCACACGGATGTGGTGCCAGTTTTTCGAGAGAAGTGGACCCATGAACC
CTTCTCCGCCGATATTGATGAAGAGGGTAGGATCTTTGCACGGGGTACTC
AGGACATGAAATCGGTGGGCACTCAGTATCTAGGAGCGATTCGCCTGCTG
AAAGCTAGTGGCTTCAAACCAAAAAGGAATTTGTATGTGACCTTTGTTCC
CGACGAAGAGACTGGTGGTCATCTGGGCATGGCGGAGTTTGTTAAGACGG
ATTACTACAAGAAAATGAACGCGGGATTCAGCCTGGACGAAGGCGCCACT
AGTGAAAGTGACGTTCATCATTTGTTCTACGCCGAACGTTTGCGATGGGG
ACTCAAGCTGAAAGTCAGTGGAACTTCTGGTCATGGTTCCCTTTTGCTAC
CCAATACGGCAGGAGTAAAACTGAACTATCTGGTCAACAAACTGACTGAA
TTCCGCACCTCGCAAGTGGAGAACCTTGCGAGAGATTCCAGCCTCAGCAA
GGGCGATGTGACCACCGTGAATCTCACCCAGTTAAGTGGCGGAGTCCAGA
GCAATGTGGTTCCGCCACTTTTCGAGGCGGTCTTCGACATACGGATTGCC
ATTACTGTGAATGTGGTTGCCTTTGAGAAACAGATTCGCGATTGGTGCGA
GGAGGCGGGTGGTGGCATTGAAATTGATTTCTTCCAGAAGGAGCCTTATA
TAGGACCCACCAAGCTGGACAATTCCAATCCCTACTGGCTAGCTGTCAAA
GCCGCAATCGATGAGCTTGGATTGAAGGTTCATCCCATCGTTTGTCCTGG
CGCCACTGACAGTCGTTTCATTCGGGAGAAGGGTACCCCAGCCATTGGAT
TCTCACCCATTATAAACACCACCATGCGGATCCATGACCACGACGAGTTT
CTGCAGGCTGATGTGTATCTTAATGGCATTGATGTGTACAAGAAGATTAT
TCGCAATCTGGCTGAAGTCTAAAAGCTTTCTAGACCAT
BS16777.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:42:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6733-RA | 1206 | CG6733-PA | 1..1206 | 17..1222 | 6030 | 100 | Plus |
CG6738-RA | 1206 | CG6738-PA | 10..1205 | 26..1221 | 1690 | 76.1 | Plus |
CG17109-RB | 1203 | CG17109-PB | 1..1130 | 17..1149 | 1580 | 76.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:42:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6733-RA | 1291 | CG6733-RA | 26..1238 | 11..1223 | 6050 | 99.9 | Plus |
CG6738-RA | 1291 | CG6738-RA | 51..1246 | 26..1221 | 1690 | 76.1 | Plus |
CG17109-RB | 1373 | CG17109-RB | 44..1173 | 17..1149 | 1580 | 76.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:42:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23097907..23098399 | 108..600 | 2465 | 100 | Plus |
3R | 32079331 | 3R | 23098457..23098875 | 599..1017 | 2095 | 100 | Plus |
3R | 32079331 | 3R | 23098933..23099138 | 1018..1223 | 1030 | 100 | Plus |
3R | 32079331 | 3R | 23099719..23100209 | 108..598 | 820 | 77.8 | Plus |
3R | 32079331 | 3R | 23095888..23096372 | 113..600 | 635 | 75.8 | Plus |
3R | 32079331 | 3R | 23096434..23096846 | 602..1014 | 625 | 76.8 | Plus |
3R | 32079331 | 3R | 23100266..23100669 | 602..1005 | 520 | 75.2 | Plus |
3R | 32079331 | 3R | 23097753..23097849 | 11..107 | 470 | 99 | Plus |
3R | 32079331 | 3R | 23092616..23092923 | 615..922 | 445 | 76.3 | Plus |
3R | 32079331 | 3R | 23092184..23092479 | 236..531 | 325 | 74 | Plus |
3R | 32079331 | 3R | 23100779..23100938 | 1062..1221 | 305 | 79.4 | Plus |
3R | 32079331 | 3R | 10676298..10676362 | 679..615 | 190 | 86.2 | Minus |
3R | 32079331 | 3R | 23091883..23091953 | 29..99 | 190 | 84.5 | Plus |
3R | 32079331 | 3R | 23095733..23095815 | 17..99 | 190 | 81.9 | Plus |
3R | 32079331 | 3R | 23096979..23097040 | 1088..1149 | 190 | 87.1 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:42:23 has no hits.
BS16777.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:54 Download gff for
BS16777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6733-RA | 1..1206 | 17..1222 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:57 Download gff for
BS16777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6733-RA | 22..1234 | 11..1223 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:07:38 Download gff for
BS16777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6733-RA | 32..1235 | 17..1220 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:54 Download gff for
BS16777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6733-RA | 22..1234 | 11..1223 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:34 Download gff for
BS16777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6733-RA | 32..1235 | 17..1220 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:34 Download gff for
BS16777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23097759..23097849 | 17..107 | 100 | -> | Plus |
3R | 23097907..23098398 | 108..599 | 100 | -> | Plus |
3R | 23098458..23098875 | 600..1017 | 100 | -> | Plus |
3R | 23098933..23099135 | 1018..1220 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:07:38 Download gff for
BS16777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18923481..18923571 | 17..107 | 100 | -> | Plus |
arm_3R | 18923629..18924120 | 108..599 | 100 | -> | Plus |
arm_3R | 18924180..18924597 | 600..1017 | 100 | -> | Plus |
arm_3R | 18924655..18924857 | 1018..1220 | 100 | | Plus |
BS16777.pep Sequence
Translation from 16 to 1221
> BS16777.pep
MSSEKWENNEEIKIFREYLRIPTVHPDVDYTACVEFLKRQASSLNLPVEV
VYPAVQTKPVVIIKWEGSQPELSSIVLNSHTDVVPVFREKWTHEPFSADI
DEEGRIFARGTQDMKSVGTQYLGAIRLLKASGFKPKRNLYVTFVPDEETG
GHLGMAEFVKTDYYKKMNAGFSLDEGATSESDVHHLFYAERLRWGLKLKV
SGTSGHGSLLLPNTAGVKLNYLVNKLTEFRTSQVENLARDSSLSKGDVTT
VNLTQLSGGVQSNVVPPLFEAVFDIRIAITVNVVAFEKQIRDWCEEAGGG
IEIDFFQKEPYIGPTKLDNSNPYWLAVKAAIDELGLKVHPIVCPGATDSR
FIREKGTPAIGFSPIINTTMRIHDHDEFLQADVYLNGIDVYKKIIRNLAE
V*
BS16777.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6733-PA | 401 | CG6733-PA | 1..401 | 1..401 | 2089 | 100 | Plus |
CG6738-PA | 401 | CG6738-PA | 1..401 | 1..401 | 1700 | 79.3 | Plus |
CG17109-PB | 400 | CG17109-PB | 1..400 | 1..401 | 1663 | 77.1 | Plus |
CG17109-PA | 400 | CG17109-PA | 1..400 | 1..401 | 1663 | 77.1 | Plus |
CG6726-PC | 401 | CG6726-PC | 1..400 | 1..400 | 1571 | 72 | Plus |