Clone BS16777 Report

Search the DGRC for BS16777

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:167
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG6733-RA
Protein status:BS16777.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16777.3prime Sequence

926 bp (837 high quality bases) assembled on 2007-05-15

> BS16777.3prime
ATGGTCTAGAAAGCTTTTAGACTTCAGCCAGATTGCGAATAATCTTCTTG
TACACATCAATGCCATTAAGATACACATCAGCCTGCAGAAACTCGTCGTG
GTCATGGATCCGCATGGTGGTGTTTATAATGGGTGAGAATCCAATGGCTG
GGGTACCCTTCTCCCGAATGAAACGACTGTCAGTGGCGCCAGGACAAACG
ATGGGATGAACCTTCAATCCAAGCTCATCGATTGCGGCTTTGACAGCTAG
CCAGTAGGGATTGGAATTGTCCAGCTTGGTGGGTCCTATATAAGGCTCCT
TCTGGAAGAAATCAATTTCAATGCCACCACCCGCCTCCTCGCACCAATCG
CGAATCTGTTTCTCAAAGGCAACCACATTCACAGTAATGGCAATCCGTAT
GTCGAAGACCGCCTCGAAAAGTGGCGGAACCACATTGCTCTGGACTCCGC
CACTTAACTGGGTGAGATTCACGGTGGTCACATCGCCCTTGCTGAGGCTG
GAATCTCTCGCAAGGTTCTCCACTTGCGAGGTGCGGAATTCAGTCAGTTT
GTTGACCAGATAGTTCAGTTTTACTCCTGCCGTATTGGGTAGCAAAAGGG
AACCATGACCAGAAGTTCCACTGACTTTCAGCTTGAGTCCCCATCGCAAA
CGTTCGGCGTAGAACAAATGATGAACGTCACTTTCACTAGTGGCGCCTTC
GTCCAGGCTGAATCCCGCGTTCATTTTCTTGTAGTAATCCGTCTTAACAA
ACTCCGCCATGCCCAGATGACCACCAGTCTCTTCGTCGGGAACAAAGGTC
ACATACAAATTCCTTTTTGGTTTGAAGCACTAGCTTTCAGCANGCGAATC
GCTCCTAGATACTGAGTGCCCACCGATTTCATGTCCTGAGTACCCCGTGC
AAAGATCCTACCCTCTTCATCAATAT

BS16777.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:17:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6733-PA 1206 CG6733-RA 395..1206 828..17 4060 100 Minus
CG6733-PA 1206 CG6733-RA 296..394 926..828 476 98.9 Minus
CG6738-PA 1206 CG6738-RA 307..385 915..837 276 93.6 Minus
CG6738-PA 1206 CG6738-RA 739..797 484..426 220 94.9 Minus
CG17109-PA 1203 CG17109-RA 842..899 378..321 190 93.1 Minus
CG17109-PA 1203 CG17109-RA 298..353 921..866 155 91 Minus
CG6726-PB 1206 CG6726-RB 852..906 371..317 150 90.9 Minus
CG6726-PA 1206 CG6726-RA 852..906 371..317 150 90.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6733-RA 1291 CG6733-RA 327..1238 926..16 4524 99.8 Minus
CG6738-RA 1291 CG6738-RA 348..1246 915..18 1294 76.6 Minus
CG17109-RB 1373 CG17109-RB 336..1173 926..90 1204 76.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23098457..23098875 640..222 2095 100 Minus
3R 32079331 3R 23098111..23098399 926..639 1384 99.3 Minus
3R 32079331 3R 23098933..23099138 221..16 1030 100 Minus
3R 32079331 3R 23096434..23096846 637..225 625 76.8 Minus
3R 32079331 3R 23100266..23100669 637..234 520 75.2 Minus
3R 32079331 3R 23099934..23100209 915..641 509 79.7 Minus
3R 32079331 3R 23092616..23092923 624..317 445 76.3 Minus
3R 32079331 3R 23096084..23096372 926..639 379 76.1 Minus
3R 32079331 3R 23100779..23100938 177..18 305 79.4 Minus
3R 32079331 3R 23094141..23094311 820..650 195 74.3 Minus
3R 32079331 3R 10676298..10676362 560..624 190 86.2 Plus
3R 32079331 3R 23096979..23097040 151..90 190 87.1 Minus
Blast to na_te.dros performed on 2015-02-11 02:54:11 has no hits.

BS16777.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:17:53 Download gff for BS16777.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6733-PA 296..1206 17..926 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:02:22 Download gff for BS16777.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6733-RA 327..1238 16..926 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:21:41 Download gff for BS16777.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6733-RA 327..1238 16..926 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:21:41 Download gff for BS16777.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23098111..23098398 640..926 99 -> Minus
3R 23098458..23098875 222..639 100 -> Minus
3R 23098933..23099138 16..221 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:02:22 Download gff for BS16777.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18923833..18924120 640..926 99 -> Minus
arm_3R 18924180..18924597 222..639 100 -> Minus
arm_3R 18924655..18924860 16..221 100   Minus

BS16777.5prime Sequence

890 bp (844 high quality bases) assembled on 2007-05-15

> BS16777.5prime
GAAGTTATCAGTCGACATGAGCTCGGAAAAGTGGGAAAACAATGAGGAAA
TTAAGATTTTCCGGGAATACTTGCGTATACCAACGGTGCATCCAGATGTT
GACTATACTGCCTGTGTGGAGTTCCTGAAACGTCAGGCTAGCTCCCTAAA
TCTTCCTGTTGAAGTGGTTTATCCTGCTGTTCAAACGAAGCCCGTTGTGA
TCATCAAGTGGGAAGGAAGTCAACCCGAACTATCGTCCATTGTTCTCAAC
TCTCACACGGATGTGGTGCCAGTTTTTCGAGAGAAGTGGACCCATGAACC
CTTCTCCGCCGATATTGATGAAGAGGGTAGGATCTTTGCACGGGGTACTC
AGGACATGAAATCGGTGGGCACTCAGTATCTAGGAGCGATTCGCCTGCTG
AAAGCTAGTGGCTTCAAACCAAAAAGGAATTTGTATGTGACCTTTGTTCC
CGACGAAGAGACTGGTGGTCATCTGGGCATGGCGGAGTTTGTTAAGACGG
ATTACTACAAGAAAATGAACGCGGGATTCAGCCTGGACGAAGGCGCCACT
AGTGAAAGTGACGTTCATCATTTGTTCTACGCCGAACGTTTGCGATGGGG
ACTCAAGCTGAAAGTCAGTGGAACTTCTGGTCATGGTTCCCTTTTGCTAC
CCAATACGGCAGGAGTAAAACTGAACTATCTGGTCAACAAACTGACTGAA
TTCCGCACCTCGCAAGTGGAGAACCTTGCGAGAGATTCCAGCCTCAGCAA
GGGCGATGTGACCACCGTGAATCTCACCCAGTTAAGTGGCGGAGTCCAGA
GCAATGTGGTTCCGCCACTTTTCGAGGCGGTCTTCGACATACGGATTGGC
ATTACTGTGAATGTGGTTGCCTTTGAGAAACAGATTCGCG

BS16777.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6733-PA 1206 CG6733-RA 1..874 17..890 4345 99.8 Plus
CG6738-PA 1206 CG6738-RA 270..385 286..401 380 93.1 Plus
CG6738-PA 1206 CG6738-RA 739..797 755..813 220 94.9 Plus
CG17109-PA 1203 CG17109-RA 265..353 284..372 195 88.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6733-RA 1291 CG6733-RA 26..905 11..890 4370 99.8 Plus
CG6738-RA 1291 CG6738-RA 51..902 26..877 1305 77.3 Plus
CG17109-RB 1373 CG17109-RB 44..909 17..885 1285 77.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23097907..23098399 108..600 2465 100 Plus
3R 32079331 3R 23098457..23098748 599..890 1445 99.7 Plus
3R 32079331 3R 23099719..23100209 108..598 820 77.8 Plus
3R 32079331 3R 23095888..23096372 113..600 635 75.8 Plus
3R 32079331 3R 23097753..23097849 11..107 470 99 Plus
3R 32079331 3R 23096434..23096717 602..885 445 77.1 Plus
3R 32079331 3R 23100266..23100541 602..877 375 75.7 Plus
3R 32079331 3R 23092616..23092891 615..890 330 74.6 Plus
3R 32079331 3R 23092184..23092479 236..531 325 74 Plus
3R 32079331 3R 10676298..10676362 679..615 190 86.2 Minus
3R 32079331 3R 23091883..23091953 29..99 190 84.5 Plus
3R 32079331 3R 23095733..23095815 17..99 190 81.9 Plus
Blast to na_te.dros performed on 2015-02-12 15:56:26 has no hits.

BS16777.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:12:07 Download gff for BS16777.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6733-PA 1..874 17..890 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:19:50 Download gff for BS16777.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6733-RA 26..905 11..890 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:28:09 Download gff for BS16777.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6733-RA 26..905 11..890 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:28:09 Download gff for BS16777.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23097753..23097849 11..107 98 -> Plus
3R 23097907..23098398 108..599 100 -> Plus
3R 23098458..23098748 600..890 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:19:50 Download gff for BS16777.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18923475..18923571 11..107 98 -> Plus
arm_3R 18923629..18924120 108..599 100 -> Plus
arm_3R 18924180..18924470 600..890 99   Plus

BS16777.complete Sequence

1238 bp assembled on 2007-05-07

GenBank Submission: FJ638191

> BS16777.complete
GAAGTTATCAGTCGACATGAGCTCGGAAAAGTGGGAAAACAATGAGGAAA
TTAAGATTTTCCGGGAATACTTGCGTATACCAACGGTGCATCCAGATGTT
GACTATACTGCCTGTGTGGAGTTCCTGAAACGTCAGGCTAGCTCCCTAAA
TCTTCCTGTTGAAGTGGTTTATCCTGCTGTTCAAACGAAGCCCGTTGTGA
TCATCAAGTGGGAAGGAAGTCAACCCGAACTATCGTCCATTGTTCTCAAC
TCTCACACGGATGTGGTGCCAGTTTTTCGAGAGAAGTGGACCCATGAACC
CTTCTCCGCCGATATTGATGAAGAGGGTAGGATCTTTGCACGGGGTACTC
AGGACATGAAATCGGTGGGCACTCAGTATCTAGGAGCGATTCGCCTGCTG
AAAGCTAGTGGCTTCAAACCAAAAAGGAATTTGTATGTGACCTTTGTTCC
CGACGAAGAGACTGGTGGTCATCTGGGCATGGCGGAGTTTGTTAAGACGG
ATTACTACAAGAAAATGAACGCGGGATTCAGCCTGGACGAAGGCGCCACT
AGTGAAAGTGACGTTCATCATTTGTTCTACGCCGAACGTTTGCGATGGGG
ACTCAAGCTGAAAGTCAGTGGAACTTCTGGTCATGGTTCCCTTTTGCTAC
CCAATACGGCAGGAGTAAAACTGAACTATCTGGTCAACAAACTGACTGAA
TTCCGCACCTCGCAAGTGGAGAACCTTGCGAGAGATTCCAGCCTCAGCAA
GGGCGATGTGACCACCGTGAATCTCACCCAGTTAAGTGGCGGAGTCCAGA
GCAATGTGGTTCCGCCACTTTTCGAGGCGGTCTTCGACATACGGATTGCC
ATTACTGTGAATGTGGTTGCCTTTGAGAAACAGATTCGCGATTGGTGCGA
GGAGGCGGGTGGTGGCATTGAAATTGATTTCTTCCAGAAGGAGCCTTATA
TAGGACCCACCAAGCTGGACAATTCCAATCCCTACTGGCTAGCTGTCAAA
GCCGCAATCGATGAGCTTGGATTGAAGGTTCATCCCATCGTTTGTCCTGG
CGCCACTGACAGTCGTTTCATTCGGGAGAAGGGTACCCCAGCCATTGGAT
TCTCACCCATTATAAACACCACCATGCGGATCCATGACCACGACGAGTTT
CTGCAGGCTGATGTGTATCTTAATGGCATTGATGTGTACAAGAAGATTAT
TCGCAATCTGGCTGAAGTCTAAAAGCTTTCTAGACCAT

BS16777.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG6733-RA 1206 CG6733-PA 1..1206 17..1222 6030 100 Plus
CG6738-RA 1206 CG6738-PA 10..1205 26..1221 1690 76.1 Plus
CG17109-RB 1203 CG17109-PB 1..1130 17..1149 1580 76.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:42:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG6733-RA 1291 CG6733-RA 26..1238 11..1223 6050 99.9 Plus
CG6738-RA 1291 CG6738-RA 51..1246 26..1221 1690 76.1 Plus
CG17109-RB 1373 CG17109-RB 44..1173 17..1149 1580 76.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23097907..23098399 108..600 2465 100 Plus
3R 32079331 3R 23098457..23098875 599..1017 2095 100 Plus
3R 32079331 3R 23098933..23099138 1018..1223 1030 100 Plus
3R 32079331 3R 23099719..23100209 108..598 820 77.8 Plus
3R 32079331 3R 23095888..23096372 113..600 635 75.8 Plus
3R 32079331 3R 23096434..23096846 602..1014 625 76.8 Plus
3R 32079331 3R 23100266..23100669 602..1005 520 75.2 Plus
3R 32079331 3R 23097753..23097849 11..107 470 99 Plus
3R 32079331 3R 23092616..23092923 615..922 445 76.3 Plus
3R 32079331 3R 23092184..23092479 236..531 325 74 Plus
3R 32079331 3R 23100779..23100938 1062..1221 305 79.4 Plus
3R 32079331 3R 10676298..10676362 679..615 190 86.2 Minus
3R 32079331 3R 23091883..23091953 29..99 190 84.5 Plus
3R 32079331 3R 23095733..23095815 17..99 190 81.9 Plus
3R 32079331 3R 23096979..23097040 1088..1149 190 87.1 Plus
Blast to na_te.dros performed on 2014-11-26 16:42:23 has no hits.

BS16777.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:54 Download gff for BS16777.complete
Subject Subject Range Query Range Percent Splice Strand
CG6733-RA 1..1206 17..1222 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:57 Download gff for BS16777.complete
Subject Subject Range Query Range Percent Splice Strand
CG6733-RA 22..1234 11..1223 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:07:38 Download gff for BS16777.complete
Subject Subject Range Query Range Percent Splice Strand
CG6733-RA 32..1235 17..1220 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:54 Download gff for BS16777.complete
Subject Subject Range Query Range Percent Splice Strand
CG6733-RA 22..1234 11..1223 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:34 Download gff for BS16777.complete
Subject Subject Range Query Range Percent Splice Strand
CG6733-RA 32..1235 17..1220 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:34 Download gff for BS16777.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23097759..23097849 17..107 100 -> Plus
3R 23097907..23098398 108..599 100 -> Plus
3R 23098458..23098875 600..1017 100 -> Plus
3R 23098933..23099135 1018..1220 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:07:38 Download gff for BS16777.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18923481..18923571 17..107 100 -> Plus
arm_3R 18923629..18924120 108..599 100 -> Plus
arm_3R 18924180..18924597 600..1017 100 -> Plus
arm_3R 18924655..18924857 1018..1220 100   Plus

BS16777.pep Sequence

Translation from 16 to 1221

> BS16777.pep
MSSEKWENNEEIKIFREYLRIPTVHPDVDYTACVEFLKRQASSLNLPVEV
VYPAVQTKPVVIIKWEGSQPELSSIVLNSHTDVVPVFREKWTHEPFSADI
DEEGRIFARGTQDMKSVGTQYLGAIRLLKASGFKPKRNLYVTFVPDEETG
GHLGMAEFVKTDYYKKMNAGFSLDEGATSESDVHHLFYAERLRWGLKLKV
SGTSGHGSLLLPNTAGVKLNYLVNKLTEFRTSQVENLARDSSLSKGDVTT
VNLTQLSGGVQSNVVPPLFEAVFDIRIAITVNVVAFEKQIRDWCEEAGGG
IEIDFFQKEPYIGPTKLDNSNPYWLAVKAAIDELGLKVHPIVCPGATDSR
FIREKGTPAIGFSPIINTTMRIHDHDEFLQADVYLNGIDVYKKIIRNLAE
V*

BS16777.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6733-PA 401 CG6733-PA 1..401 1..401 2089 100 Plus
CG6738-PA 401 CG6738-PA 1..401 1..401 1700 79.3 Plus
CG17109-PB 400 CG17109-PB 1..400 1..401 1663 77.1 Plus
CG17109-PA 400 CG17109-PA 1..400 1..401 1663 77.1 Plus
CG6726-PC 401 CG6726-PC 1..400 1..400 1571 72 Plus