Clone BS16785 Report

Search the DGRC for BS16785

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:167
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG40191-RB
Protein status:BS16785.pep: full length peptide match
Sequenced Size:1223

Clone Sequence Records

BS16785.3prime Sequence

852 bp (702 high quality bases) assembled on 2007-05-15

> BS16785.3prime
ATGGTCTAGAAAGCTTTTACTGCATTGCTTCGGTGTTGGCTTGCCAAATA
ACGGAATCATTTTCAGCCTTTTGCTCTTCTAGTTGTACGGATCTAACTGT
TATTGAAAGGTTTCTGTTGTTTTTGTAGTCGCTGTTGGGCGATTTAATAT
TTAGCCAATTCCTTGTTCCATCTTGGGCATACAATAAATCAAGTTGTGGA
CAGGTGCTTATGAATGAAAGCGTAGGTACTGATTGATGGCGCGGATGCTT
ATATTCAATTTTATTCAGTCTTGCCCTGGCGCAGCTTGTCTTCTCAAGAT
TCATCAATTCAACATTCACGTTACTCGTTTTACGTAAAAGTGAGGATACT
TGGACATTAATAAAAGGTGTGGACTCTAATGCATTTGAAACGGATACCTG
ACTGCTAATTGTCATGGTGAAATCTGAGGCAGTTTCCACATCCCGATGCC
ATAACGTACCGGGAACTTGGCTCGCAATAAAAAAAGCTCCGGCTAATGTT
ATAATACTTGCCGCATAGCTTAGAGATAGTACAGACAGGCTGTTAACGAG
GAATTTCGTCCATTCAAGGCTAGGCAGCAACTGCACGAGCTCACTGTAAG
TGAGCCAACCTCTACGCAGTCCCTGCTGTTCAGCCAAAGAACGTTCAACG
TTTCTTAACTTATCAAAGAATAGCTCATTGGATATGTATATATTCCAACC
CATAGCGGAAAGAAATTCGAGCTCGACTGCCTTGAGCCTATCTTCCGTCA
TACAAGCGTCACTGGCCCAGTCTTCCAGATAGAACCGTTCGTCGTGGCCC
GCGTAGAATTTTGTGGAAATCATTAGTGACACAACAAACAGCTGCTGTGG
TG

BS16785.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-15 17:15:02 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG40191-RC 1518 CG40191-RC 547..1382 852..17 4180 100 Minus
CG40191-RD 1386 CG40191-RD 367..1202 852..17 4180 100 Minus
CG40191-RA 2923 CG40191-RA 367..1202 852..17 4180 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 1265342..1266026 701..17 3425 100 Minus
2R 25286936 2R 1265171..1265294 823..700 620 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:19:26 has no hits.

BS16785.3prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:29:43 Download gff for BS16785.3prime
Subject Subject Range Query Range Percent Splice Strand
CG40191-RA 367..1211 7..852 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:48:11 Download gff for BS16785.3prime
Subject Subject Range Query Range Percent Splice Strand
CG40191-RA 367..1211 7..852 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:48:11 Download gff for BS16785.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 1264813..1264841 824..852 100 -> Minus
2R 1265171..1265293 701..823 100 -> Minus
2R 1265343..1266035 7..700 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:29:43 Download gff for BS16785.3prime
Subject Subject Range Query Range Percent Splice Strand
2RHet 391446..391474 824..852 100 -> Minus
2RHet 391804..391926 701..823 100 -> Minus
2RHet 391976..392668 7..700 99   Minus

BS16785.complete Sequence

1223 bp assembled on 2010-05-12

GenBank Submission: KX804794

> BS16785.complete
GAAGTTATCAGTCGATATGGGGCGATTTAAGTTATGTGCTTCGCCGAGAG
AGGTATTTAAAAAGTTTTCACGAATATATGTATTAGCAAATTTTTTAAAT
TTCCAGGTTATGAAGTACGAAGACTTTATAAAACGCATTCGAAAAAGCCT
CTACTATGGCGTTGGAACACCAGACACAGAAATGTCGGTCTCCTTACCCT
TTGCGGAGTACGCGGCAGATTTGTTTTCGGAGACTCATCGCGGGCATTCT
TTGCATCGCCTAAGTTGCGTATCTGCTGCACAAGTACATGCCACGCCTTG
CTCTTTAATTATGGCATTGATATACCTCGATCGCTTAAACGTCATCGACT
CGGGCTATAGCTGCAGAATCACACCACAGCAGCTGTTTGTTGTGTCACTA
ATGATTTCCACAAAATTCTACGCGGGCCACGACGAACGGTTCTATCTGGA
AGACTGGGCCAGTGACGCTTGTATGACGGAAGATAGGCTCAAGGCAGTCG
AGCTCGAATTTCTTTCCGCTATGGGTTGGAATATATACATATCCAATGAG
CTATTCTTTGATAAGTTAAGAAACGTTGAACGTTCTTTGGCTGAACAGCA
GGGACTGCGTAGAGGTTGGCTCACTTACAGTGAGCTCGTGCAGTTGCTGC
CTAGCCTTGAATGGACGAAATTCCTCGTTAACAGCCTGTCTGTACTATCT
CTAAGCTATGCGGCAAGTATTATAACATTAGCCGGAGCTTTTTTTATTGC
GAGCCAAGTTCCCGGTACGTTATGGCATCGGGATGTGGAAACTGCCTCAG
ATTTCACCATGACAATTAGCAGTCAGGTATCCGTTTCAAATGCATTAGAG
TCCACACCTTTTATTAATGTCCAAGTATCCTCACTTTTACGTAAAACGAG
TAACGTGAATGTTGAATTGATGAATCTTGAGAAGACAAGCTGCGCCAGGG
CAAGACTGAATAAAATTGAATATAAGCATCCGCGCCATCAATCAGTACCT
ACGCTTTCATTCATAAGCACCTGTCCACAACTTGATTTATTGTATGCCCA
AGATGGAACAAGGAATTGGCTAAATATTAAATCGCCCAACAGCGACTACA
AAAACAACAGAAACCTTTCAATAACAGTTAGATCCGTACAACTAGAAGAG
CAAAAGGCTGAAAATGATTCCGTTATTTGGCAAGCCAACACCGAAGCAAT
GCAGTAAAAGCTTTCTAGACCAT

BS16785.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:03:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG40191-RB 1191 CG40191-PB 1..1191 17..1207 5955 100 Plus
CG40191-RC 1137 CG40191-PC 35..1137 105..1207 5515 100 Plus
CG40191-RD 1137 CG40191-PD 35..1137 105..1207 5515 100 Plus
CG40191-RC 1137 CG40191-PC 1..38 17..54 190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:03:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG40191-RB 1579 CG40191-RB 66..1256 17..1207 5955 100 Plus
CG40191-RC 1518 CG40191-RC 280..1382 105..1207 5515 100 Plus
CG40191-RD 1386 CG40191-RD 100..1202 105..1207 5515 100 Plus
CG40191-RC 1518 CG40191-RC 246..283 17..54 190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:03:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 1265342..1266026 523..1207 3425 100 Plus
2R 25286936 2R 1264458..1264841 17..400 1920 100 Plus
2R 25286936 2R 1265171..1265294 401..524 620 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:03:47 has no hits.

BS16785.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-12 12:11:42 Download gff for BS16785.complete
Subject Subject Range Query Range Percent Splice Strand
CG40191-RB 63..1251 17..1205 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:43 Download gff for BS16785.complete
Subject Subject Range Query Range Percent Splice Strand
CG40191-RB 66..1254 17..1205 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:20:51 Download gff for BS16785.complete
Subject Subject Range Query Range Percent Splice Strand
CG40191-RB 66..1254 17..1205 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:20:51 Download gff for BS16785.complete
Subject Subject Range Query Range Percent Splice Strand
2R 1264458..1264841 17..400 100 -> Plus
2R 1265171..1265293 401..523 100 -> Plus
2R 1265343..1266024 524..1205 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:43 Download gff for BS16785.complete
Subject Subject Range Query Range Percent Splice Strand
2RHet 391091..391474 17..400 100 -> Plus
2RHet 391804..391926 401..523 100 -> Plus
2RHet 391976..392657 524..1205 100   Plus

BS16785.pep Sequence

Translation from 16 to 1206

> BS16785.pep
MGRFKLCASPREVFKKFSRIYVLANFLNFQVMKYEDFIKRIRKSLYYGVG
TPDTEMSVSLPFAEYAADLFSETHRGHSLHRLSCVSAAQVHATPCSLIMA
LIYLDRLNVIDSGYSCRITPQQLFVVSLMISTKFYAGHDERFYLEDWASD
ACMTEDRLKAVELEFLSAMGWNIYISNELFFDKLRNVERSLAEQQGLRRG
WLTYSELVQLLPSLEWTKFLVNSLSVLSLSYAASIITLAGAFFIASQVPG
TLWHRDVETASDFTMTISSQVSVSNALESTPFINVQVSSLLRKTSNVNVE
LMNLEKTSCARARLNKIEYKHPRHQSVPTLSFISTCPQLDLLYAQDGTRN
WLNIKSPNSDYKNNRNLSITVRSVQLEEQKAENDSVIWQANTEAMQ*

BS16785.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG40191-PB 396 CG40191-PB 1..396 1..396 2032 100 Plus
CG40191-PC 378 CG40191-PC 1..378 1..396 1912 95.5 Plus
CG40191-PD 378 CG40191-PD 1..378 1..396 1912 95.5 Plus
CG40191-PA 378 CG40191-PA 1..378 1..396 1912 95.5 Plus
CG40191-PE 268 CG40191-PE 1..268 129..396 1371 100 Plus