Clone Sequence Records
BS16785.3prime Sequence
852 bp (702 high quality bases) assembled on 2007-05-15
> BS16785.3prime
ATGGTCTAGAAAGCTTTTACTGCATTGCTTCGGTGTTGGCTTGCCAAATA
ACGGAATCATTTTCAGCCTTTTGCTCTTCTAGTTGTACGGATCTAACTGT
TATTGAAAGGTTTCTGTTGTTTTTGTAGTCGCTGTTGGGCGATTTAATAT
TTAGCCAATTCCTTGTTCCATCTTGGGCATACAATAAATCAAGTTGTGGA
CAGGTGCTTATGAATGAAAGCGTAGGTACTGATTGATGGCGCGGATGCTT
ATATTCAATTTTATTCAGTCTTGCCCTGGCGCAGCTTGTCTTCTCAAGAT
TCATCAATTCAACATTCACGTTACTCGTTTTACGTAAAAGTGAGGATACT
TGGACATTAATAAAAGGTGTGGACTCTAATGCATTTGAAACGGATACCTG
ACTGCTAATTGTCATGGTGAAATCTGAGGCAGTTTCCACATCCCGATGCC
ATAACGTACCGGGAACTTGGCTCGCAATAAAAAAAGCTCCGGCTAATGTT
ATAATACTTGCCGCATAGCTTAGAGATAGTACAGACAGGCTGTTAACGAG
GAATTTCGTCCATTCAAGGCTAGGCAGCAACTGCACGAGCTCACTGTAAG
TGAGCCAACCTCTACGCAGTCCCTGCTGTTCAGCCAAAGAACGTTCAACG
TTTCTTAACTTATCAAAGAATAGCTCATTGGATATGTATATATTCCAACC
CATAGCGGAAAGAAATTCGAGCTCGACTGCCTTGAGCCTATCTTCCGTCA
TACAAGCGTCACTGGCCCAGTCTTCCAGATAGAACCGTTCGTCGTGGCCC
GCGTAGAATTTTGTGGAAATCATTAGTGACACAACAAACAGCTGCTGTGG
TG
BS16785.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-15 17:15:02 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:19:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40191-RC | 1518 | CG40191-RC | 547..1382 | 852..17 | 4180 | 100 | Minus |
CG40191-RD | 1386 | CG40191-RD | 367..1202 | 852..17 | 4180 | 100 | Minus |
CG40191-RA | 2923 | CG40191-RA | 367..1202 | 852..17 | 4180 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:19:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 1265342..1266026 | 701..17 | 3425 | 100 | Minus |
2R | 25286936 | 2R | 1265171..1265294 | 823..700 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:19:26 has no hits.
BS16785.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:29:43 Download gff for
BS16785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40191-RA | 367..1211 | 7..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:48:11 Download gff for
BS16785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40191-RA | 367..1211 | 7..852 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:48:11 Download gff for
BS16785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 1264813..1264841 | 824..852 | 100 | -> | Minus |
2R | 1265171..1265293 | 701..823 | 100 | -> | Minus |
2R | 1265343..1266035 | 7..700 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:29:43 Download gff for
BS16785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2RHet | 391446..391474 | 824..852 | 100 | -> | Minus |
2RHet | 391804..391926 | 701..823 | 100 | -> | Minus |
2RHet | 391976..392668 | 7..700 | 99 | | Minus |
BS16785.complete Sequence
1223 bp assembled on 2010-05-12
GenBank Submission: KX804794
> BS16785.complete
GAAGTTATCAGTCGATATGGGGCGATTTAAGTTATGTGCTTCGCCGAGAG
AGGTATTTAAAAAGTTTTCACGAATATATGTATTAGCAAATTTTTTAAAT
TTCCAGGTTATGAAGTACGAAGACTTTATAAAACGCATTCGAAAAAGCCT
CTACTATGGCGTTGGAACACCAGACACAGAAATGTCGGTCTCCTTACCCT
TTGCGGAGTACGCGGCAGATTTGTTTTCGGAGACTCATCGCGGGCATTCT
TTGCATCGCCTAAGTTGCGTATCTGCTGCACAAGTACATGCCACGCCTTG
CTCTTTAATTATGGCATTGATATACCTCGATCGCTTAAACGTCATCGACT
CGGGCTATAGCTGCAGAATCACACCACAGCAGCTGTTTGTTGTGTCACTA
ATGATTTCCACAAAATTCTACGCGGGCCACGACGAACGGTTCTATCTGGA
AGACTGGGCCAGTGACGCTTGTATGACGGAAGATAGGCTCAAGGCAGTCG
AGCTCGAATTTCTTTCCGCTATGGGTTGGAATATATACATATCCAATGAG
CTATTCTTTGATAAGTTAAGAAACGTTGAACGTTCTTTGGCTGAACAGCA
GGGACTGCGTAGAGGTTGGCTCACTTACAGTGAGCTCGTGCAGTTGCTGC
CTAGCCTTGAATGGACGAAATTCCTCGTTAACAGCCTGTCTGTACTATCT
CTAAGCTATGCGGCAAGTATTATAACATTAGCCGGAGCTTTTTTTATTGC
GAGCCAAGTTCCCGGTACGTTATGGCATCGGGATGTGGAAACTGCCTCAG
ATTTCACCATGACAATTAGCAGTCAGGTATCCGTTTCAAATGCATTAGAG
TCCACACCTTTTATTAATGTCCAAGTATCCTCACTTTTACGTAAAACGAG
TAACGTGAATGTTGAATTGATGAATCTTGAGAAGACAAGCTGCGCCAGGG
CAAGACTGAATAAAATTGAATATAAGCATCCGCGCCATCAATCAGTACCT
ACGCTTTCATTCATAAGCACCTGTCCACAACTTGATTTATTGTATGCCCA
AGATGGAACAAGGAATTGGCTAAATATTAAATCGCCCAACAGCGACTACA
AAAACAACAGAAACCTTTCAATAACAGTTAGATCCGTACAACTAGAAGAG
CAAAAGGCTGAAAATGATTCCGTTATTTGGCAAGCCAACACCGAAGCAAT
GCAGTAAAAGCTTTCTAGACCAT
BS16785.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:03:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40191-RB | 1191 | CG40191-PB | 1..1191 | 17..1207 | 5955 | 100 | Plus |
CG40191-RC | 1137 | CG40191-PC | 35..1137 | 105..1207 | 5515 | 100 | Plus |
CG40191-RD | 1137 | CG40191-PD | 35..1137 | 105..1207 | 5515 | 100 | Plus |
CG40191-RC | 1137 | CG40191-PC | 1..38 | 17..54 | 190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:03:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40191-RB | 1579 | CG40191-RB | 66..1256 | 17..1207 | 5955 | 100 | Plus |
CG40191-RC | 1518 | CG40191-RC | 280..1382 | 105..1207 | 5515 | 100 | Plus |
CG40191-RD | 1386 | CG40191-RD | 100..1202 | 105..1207 | 5515 | 100 | Plus |
CG40191-RC | 1518 | CG40191-RC | 246..283 | 17..54 | 190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:03:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 1265342..1266026 | 523..1207 | 3425 | 100 | Plus |
2R | 25286936 | 2R | 1264458..1264841 | 17..400 | 1920 | 100 | Plus |
2R | 25286936 | 2R | 1265171..1265294 | 401..524 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:03:47 has no hits.
BS16785.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-12 12:11:42 Download gff for
BS16785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40191-RB | 63..1251 | 17..1205 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:43 Download gff for
BS16785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40191-RB | 66..1254 | 17..1205 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:20:51 Download gff for
BS16785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40191-RB | 66..1254 | 17..1205 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:20:51 Download gff for
BS16785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 1264458..1264841 | 17..400 | 100 | -> | Plus |
2R | 1265171..1265293 | 401..523 | 100 | -> | Plus |
2R | 1265343..1266024 | 524..1205 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:43 Download gff for
BS16785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2RHet | 391091..391474 | 17..400 | 100 | -> | Plus |
2RHet | 391804..391926 | 401..523 | 100 | -> | Plus |
2RHet | 391976..392657 | 524..1205 | 100 | | Plus |
BS16785.pep Sequence
Translation from 16 to 1206
> BS16785.pep
MGRFKLCASPREVFKKFSRIYVLANFLNFQVMKYEDFIKRIRKSLYYGVG
TPDTEMSVSLPFAEYAADLFSETHRGHSLHRLSCVSAAQVHATPCSLIMA
LIYLDRLNVIDSGYSCRITPQQLFVVSLMISTKFYAGHDERFYLEDWASD
ACMTEDRLKAVELEFLSAMGWNIYISNELFFDKLRNVERSLAEQQGLRRG
WLTYSELVQLLPSLEWTKFLVNSLSVLSLSYAASIITLAGAFFIASQVPG
TLWHRDVETASDFTMTISSQVSVSNALESTPFINVQVSSLLRKTSNVNVE
LMNLEKTSCARARLNKIEYKHPRHQSVPTLSFISTCPQLDLLYAQDGTRN
WLNIKSPNSDYKNNRNLSITVRSVQLEEQKAENDSVIWQANTEAMQ*
BS16785.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:25:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40191-PB | 396 | CG40191-PB | 1..396 | 1..396 | 2032 | 100 | Plus |
CG40191-PC | 378 | CG40191-PC | 1..378 | 1..396 | 1912 | 95.5 | Plus |
CG40191-PD | 378 | CG40191-PD | 1..378 | 1..396 | 1912 | 95.5 | Plus |
CG40191-PA | 378 | CG40191-PA | 1..378 | 1..396 | 1912 | 95.5 | Plus |
CG40191-PE | 268 | CG40191-PE | 1..268 | 129..396 | 1371 | 100 | Plus |