Clone BS16789 Report

Search the DGRC for BS16789

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:167
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptCG14299-RB
Protein status:BS16789.pep: Imported from assembly
Sequenced Size:3158

Clone Sequence Records

BS16789.complete Sequence

3158 bp assembled on 2009-12-08

GenBank Submission: KX805847

> BS16789.complete
GAAGTTATCAGTCGACATGGCCACGTTGGAGAAGCCCAAAAAGGAGAAGA
GCAAGAAGTCTCGCAACAGAGTGCCGATCGAAAAAGAGGAAGAGGAACCT
GCTGAGTTATCAACAAGTGAAGAACAAAGACCAGCGGAGAATGTGTCTCT
GTTGGAGGAATTCGAGCGCGTTGCGACCTTGGCCAGCAGTTCCAGTGGCG
AGGCAATCATAAGCCACGAGTGCTGCATTTCCAGCGATGTAGGAGTAACG
TCGCAAGAGCCAGAAGGAACACAGGAACCCACAGAAACGGAGGCCCAACC
CAGTGCTCCAAGTGCCCCGCCCTCGACGACCGTTCACGTCGTTCAGTATC
CCAACCTGCAGCCCATGCAGCTGTCCAACGCCCAAGTGGAGGAGCATTCC
GCTAAGATCGTGTACCGACAGGCGGAGTCGCCCACCGGTTTCGCGCTAGC
CAGGAGTCACATTAAGCTATTGAGCACGGAGGAACTGCGGCAAATTTACG
ATTGTCCCGAGCTGGAGCTGGCCAAGCAATTTGAGTTGGAGTTTCTAATG
AACTCATTGCTGGAGACCAGCGAGGCGGATCCCCTGTATGCGGCTGTTAT
GGAATACTATGAACTGCAGGGAAAGATCACCTCCAATCTGCACGATGTAG
AGAAGCTGCGCAAGGGCTGCGCCGAGTCCCAAAAACAAATCTGGGTCCGA
CAGCCAGTTACACGCACTTTCAGTGGAACCTGCGGCGATGGCAATGTGGT
CCAGGAATGCGTCACCTACGATGTGATACAGGTGGATCCCATTAAACTAG
AAGTGGCCAAGACGTCTTTAACTGGCCTATATGACCTGGTGTGCCACGCG
TATACGAATAACTCGATTACAGCCAAGATAACCAAAGTAAAGGTTGACCA
AATCATCAATGATCTGCTGACCTATCCCAATTTGGATGGCCATTCGGTGG
TTTCATTACATCACACACAATCTGGAGAGGCACTGCAGTGCGTTTCCCAA
CTAAGGCGAGCTATATCCATACTTTTCAGCTTCGTTCGCAGACCCAGTCC
AAATGCAAATTTCGACAAAGACCTCAAGGAATGGCTGCGCAAGCTGATTG
CTCTGCAATTGTTGCTGGCAACGAGAGAGGATCACTGGTTCCTTCTATTT
AACATCCTGCGCTGTCCCAATGGAGTCGGCTCCTGGGCTGCCCAATTCCT
GCAACTGCCGGGAACGCGAGCAGTGCGCCGTGGTTCCCAACAGAACGAAC
TGCCACTTGACCTAAACTCGCCCGAACTTAACCACTGCATGGCTGTGCTG
CAGATTTTGCTGATGCCCGTGAAAAAACGAAACGAATATCTCAAGAGTCA
GGCTCAAGCTCACCGCGAACTTTCCGATACGCCGGGAGCCACTGATCGCT
GGATAGTGGTGGATTCCGATGGCGAGGACTCGCACACACCCGCCGGCGAA
TGCGTAGGTCTGAAGGAAAGTGACCTGGTCGCCCTGCTCAACCAGATGCC
TTTCGAGAAGATCTTTACCTCGGCCCTGCGCATTGAAAAATTTCTAGACG
ACTACATTATCGAACCGGATATGATCACGGCCCAGCAAATGCTCGCCGTG
GTAGTGTTTTTTTCCCAACTGGTCAAGACAATCGGTGAAGGATTGCTGAC
CTACAATAACGAGCGATATAAGCAGCTGGCCAAACGACTTGGTCGTCTGG
TCCGACATACTCTGCAATACGTGTTTGATTACAACGAACTGTTCATTAAC
AACAACCTTTATAAATCCTCCGAGATGTACGAGCGCATCCAAGTGGAATT
ACAAGCCCTACTTGTACGTGCTTGTGGCTACATCTACCGCACCCGAAACC
TGGGCACATGGCAATACTTTTCCACGCTGCCCTTCGGCACCTTGGATGCA
GAGGTTATCTGGCACTTGTTTTACTATCTAAATGTGGGTTTCCCCACGGA
TTTGGCCAACGATTTAGTGAGCAATGCGGAAGCAGCCTTTCAAGCGGAAG
ATTTCTGGCGGAAATTCGATCTAGCGAATGCCGATGTGGCGCCCGAGGAT
ATGTACTACCTTCTGCAGACATTCTTTGAGATGGCCAATGAACGAAATCG
ATCTAAGGATGGAAGTCTCGTCAAGGCAATCTGCCTACACATCTTCCACA
TTGGATATATACATAAGTCTACGAGGGAAATTTGCTATAAAACTGCGCGT
GATATGCTGGCCAACTTAATGGATGAGGATCTCTTTGGTTGTGTGTTGGT
GCAGCTGAAGATGCGATACGGAGAAGTAGATCAAGCGGCTTATCTTTTCA
AAGCTCTGCCTCTAGAAAACTGGCACCCCAGCATGGATACCTTTGAGGTG
CTCTCTAACTGGCTCCTTCATTTTGACTACCAATCGTCGGAGAGTCAATT
AGCTCGCTTGATTATCAGCCACTTAAACTGGGGATTAGATTGCGAGGGTC
GGCTCTTTCTGCCGCACAACATACACGTGAGAATGGCTCACCTGGTGAAT
GAAGCACTGAATAAATATGCTCCGGAGGTTATTGGTGCCTCCGGCATTTC
TGAGAGCGTCCGTCAAGTGTCTTCCCTCATTGATTCCACGCAATCGAGCC
GAGAGCAGTTTACGAACTGGTGCTGGCGCATGGTCTCCGTTTTGCGGCTT
CATCTGATGGATCAGGGTGTGGAGTCCGTTAGGCGCACTCTCCAACATCC
GACGGAGCCACTACTTTTTATTCCCGAACTAGAACGAATGGAGATGATAT
TCCAGGGCGTAAATGAGAACAGACCCCTCGCTTTGTATGTGGGCATGTTG
GTCAGCCTCCATGGCCATTCGATTCCGCTGATCTGCCAGCACGGATTTAT
CCTTCTTCAGCAACTGCTGTTGGATCATCGTCACGCGGCCACAATTCGCT
GCTTGGAGTTAATAGTACCATTGTTTTTGGAAACGCCCGAAACTCTGGCC
AATTGTGAAAGTTTTCAGAGACTTATCACCACTCTCTTAAACGCGGATCG
TACCTATTTGAAGCTGGCTAAGGACATGGTCTATGCAAATTCAATTGGCC
CCATTCTGGAATTGCTAGACAACATGTTGCACCATCAGATTATTTCATAT
ACAAGGATGGTCCCAGAACTCCAATTTATTGTATCTCCTTGAAAGCTTTC
TAGACCAT

BS16789.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:52:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG14299-RC 7368 CG14299-PC 1..3089 17..3105 15430 100 Plus
CG14299-RD 7365 CG14299-PD 1..3086 17..3105 15350 99.9 Plus
CG14299-RC 7368 CG14299-PC 3153..3191 3104..3142 195 100 Plus
CG14299-RD 7365 CG14299-PD 3150..3188 3104..3142 195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14299-RC 7607 CG14299-RC 102..3192 15..3105 15440 100 Plus
CG14299-RD 7604 CG14299-RD 102..3189 15..3105 15360 99.9 Plus
CG14299-RC 7607 CG14299-RC 3256..3294 3104..3142 195 100 Plus
CG14299-RD 7604 CG14299-RD 3253..3291 3104..3142 195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18755542..18756756 2961..1747 6075 100 Minus
3R 32079331 3R 18757968..18758694 771..45 3620 99.9 Minus
3R 32079331 3R 18757105..18757565 1518..1058 2305 100 Minus
3R 32079331 3R 18757628..18757913 1057..772 1430 100 Minus
3R 32079331 3R 18756819..18757054 1746..1511 1150 99.2 Minus
3R 32079331 3R 18755340..18755486 3106..2960 735 100 Minus
3R 32079331 3R 18755175..18755213 3142..3104 195 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:52:47 has no hits.

BS16789.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:38 Download gff for BS16789.complete
Subject Subject Range Query Range Percent Splice Strand
CG14299-RB 97..3221 17..3141 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:00:20 Download gff for BS16789.complete
Subject Subject Range Query Range Percent Splice Strand
CG14299-RC 104..3192 17..3105 99 -- Plus
CG14299-RC 3258..3293 3106..3141 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:31 Download gff for BS16789.complete
Subject Subject Range Query Range Percent Splice Strand
CG14299-RB 97..3221 17..3141 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:01 Download gff for BS16789.complete
Subject Subject Range Query Range Percent Splice Strand
CG14299-RC 104..3192 17..3105 99 -- Plus
CG14299-RC 3258..3293 3106..3141 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:01 Download gff for BS16789.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18755176..18755211 3106..3141 100 <- Minus
3R 18755341..18755484 2962..3105 100 <- Minus
3R 18755542..18756756 1747..2961 100 <- Minus
3R 18756819..18757046 1519..1746 100 <- Minus
3R 18757105..18757565 1058..1518 100 <- Minus
3R 18757628..18757913 772..1057 100 <- Minus
3R 18757968..18758692 47..771 99 <- Minus
3R 18758741..18758770 17..46 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:00:20 Download gff for BS16789.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14580898..14580933 3106..3141 100 <- Minus
arm_3R 14581063..14581206 2962..3105 100 <- Minus
arm_3R 14581264..14582478 1747..2961 100 <- Minus
arm_3R 14582541..14582768 1519..1746 100 <- Minus
arm_3R 14582827..14583287 1058..1518 100 <- Minus
arm_3R 14583350..14583635 772..1057 100 <- Minus
arm_3R 14583690..14584414 47..771 99 <- Minus
arm_3R 14584463..14584492 17..46 100   Minus

BS16789.3prime Sequence

863 bp (801 high quality bases) assembled on 2007-05-15

> BS16789.3prime
ATGGTCTAGAAAGCTTTCAAGGAGATACAATAAATTGGAGTTCTGGGACC
ATCCTTGTATATGAAATAATCTGATGGTGCAACATGTTGTCTAGCAATTC
CAGAATGGGGCCAATTGAATTTGCATAGACCATGTCCTTAGCCAGCTTCA
AATAGGTACGATCCGCGTTTAAGAGAGTGGTGATAAGTCTCTGAAAACTT
TCACAATTGGCCAGAGTTTCGGGCGTTTCCAAAAACAATGGTACTATTAA
CTCCAAGCAGCGAATTGTGGCCGCGTGACGATGATCCAACAGCAGTTGCT
GAAGAAGGATAAATCCGTGCTGGCAGATCAGCGGAATCGAATGGCCATGG
AGGCTGACCAACATGCCCACATACAAAGCGAGGGGTCTGTTCTCATTTAC
GCCCTGGAATATCATCTCCATTCGTTCTAGTTCGGGAATAAAAAGTAGTG
GCTCCGTCGGATGTTGGAGAGTGCGCCTAACGGACTCCACACCCTGATCC
ATCAGATGAAGCCGCAAAACGGAGACCATGCGCCAGCACCAGTTCGTAAA
CTGCTCTCGGCTCGATTGCGTGGAATCAATGAGGGAAGACACTTGACGGA
CGCTCTCAGAAATGCCGGAGGCACCAATAACCTCCGGAGCATATTTATTC
AGTGCTTCATTCACCAGGTGAGCCATTCTCACGTGTATGTTGTGCGGCAG
AAAGAGCCGACCCTCGCAATCTAATCCCCAGTTTAAGTGGCTGATAATCA
AGCGAGCTAATTGACTCTCCGACGATTGGTAGTCAAAATGAAGGAGCCAG
TTAGAGAGCACCTCAAAGGTATCCATGCTGGGGTGCCAGTTTTCTAGAAG
CAGAGCTTTGAAA

BS16789.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG14299-PB 3126 CG14299-RB 2280..3126 863..17 4210 99.8 Minus
CG14299-PA 7215 CG14299-RA 2280..3089 863..54 4025 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:24:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG14299-RC 7607 CG14299-RC 2383..3192 863..54 4035 99.9 Minus
CG14299-RD 7604 CG14299-RD 2380..3189 863..54 4035 99.9 Minus
CG14299-RC 7607 CG14299-RC 3256..3294 55..17 195 100 Minus
CG14299-RD 7604 CG14299-RD 3253..3291 55..17 195 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18755542..18756207 198..863 3315 99.8 Plus
3R 32079331 3R 18755340..18755486 53..199 735 100 Plus
3R 32079331 3R 18755175..18755213 17..55 195 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:24:52 has no hits.

BS16789.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:18:08 Download gff for BS16789.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14299-PB 2283..3126 17..860 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:30:23 Download gff for BS16789.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14299-RD 2383..3189 54..860 99 -- Minus
CG14299-RD 3255..3301 7..53 91   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:11:12 Download gff for BS16789.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14299-RD 2383..3189 54..860 99 -- Minus
CG14299-RD 3255..3301 7..53 91   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:11:12 Download gff for BS16789.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18755341..18755484 54..197 100 <- Plus
3R 18755165..18755211 7..53 91 <- Plus
3R 18755542..18756204 198..860 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:30:23 Download gff for BS16789.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14580887..14580933 7..53 91 <- Plus
arm_3R 14581063..14581206 54..197 100 <- Plus
arm_3R 14581264..14581926 198..860 99   Plus

BS16789.5prime Sequence

839 bp (777 high quality bases) assembled on 2007-05-15

> BS16789.5prime
GAAGTTATCAGTCGACATGGCCACGTTGGAGAAGCCCAAAAAGGAGAAGA
GCAAGAAGTCTCGCAACAGAGTGCCGATCGAAAAAGAGGAAGAGGAACCT
GCTGAGTTATCAACAAGTGAAGAACAAAGACCAGCGGAGAATGTGTCTCT
GTTGGAGGAATTCGAGCGCGTTGCGACCTTGGCCAGCAGTTCCAGTGGCG
AGGCAATCATAAGCCACGAGTGCTGCATTTCCAGCGATGTAGGAGTAACG
TCGCAAGAGCCAGAAGGAACACAGGAACCCACAGAAACGGAGGCCCAACC
CAGTGCTCCAAGTGCCCCGCCCTCGACGACCGTTCACGTCGTTCAGTATC
CCAACCTGCAGCCCATGCAGCTGTCCAACGCCCAAGTGGAGGAGCATTCC
GCTAAGATCGTGTACCGACAGGCGGAGTCGCCCACCGGTTTCGCGCTAGC
CAGGAGTCACATTAAGCTATTGAGCACGGAGGAACTGCGGCAAATTTACG
ATTGTCCCGAGCTGGAGCTGGCCAAGCAATTTGAGTTGGAGTTTCTAATG
AACTCATTGCTGGAGACCAGCGAGGCGGATCCCCTGTATGCGGCTGTTAT
GGAATACTATGAACTGCAGGGAAAGATCACCTCCAATCTGCACGATGTAG
AGAAGCTGCGCAAGGGCTGCGCCGAGTCCCAAAAACAAATCTGGGTCCGA
CAGCCAGTTACACGCACTTTCAGTGGAACCTGCGGCGATGGCAATGTGGT
CCAGGAATGCGTCACCTACGATGTGATACAGGTGGATCCCATTAAACTAG
AAGTGGGCCAGACGTCTTTTACTGGCCTATATGACCTGG

BS16789.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:12:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG14299-PA 7215 CG14299-RA 1..823 17..839 4015 99.5 Plus
CG14299-PB 3126 CG14299-RB 1..823 17..839 4015 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG14299-RC 7607 CG14299-RC 102..926 15..839 4065 99.5 Plus
CG14299-RD 7604 CG14299-RD 102..923 15..839 4010 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18757968..18758694 771..45 3620 99.9 Minus
3R 32079331 3R 18757846..18757913 839..772 295 95.6 Minus
Blast to na_te.dros performed on 2015-02-10 15:21:16 has no hits.

BS16789.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:12:20 Download gff for BS16789.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14299-PB 1..823 17..839 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:21:48 Download gff for BS16789.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14299-RC 102..926 15..839 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:57 Download gff for BS16789.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14299-RC 102..926 15..839 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:57 Download gff for BS16789.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18757846..18757913 772..839 95 <- Minus
3R 18757968..18758692 47..771 99 <- Minus
3R 18758741..18758772 15..46 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:21:48 Download gff for BS16789.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14583568..14583635 772..839 95 <- Minus
arm_3R 14583690..14584414 47..771 99 <- Minus
arm_3R 14584463..14584494 15..46 100   Minus

BS16789.pep Sequence

Translation from 16 to 3141

> BS16789.pep
MATLEKPKKEKSKKSRNRVPIEKEEEEPAELSTSEEQRPAENVSLLEEFE
RVATLASSSSGEAIISHECCISSDVGVTSQEPEGTQEPTETEAQPSAPSA
PPSTTVHVVQYPNLQPMQLSNAQVEEHSAKIVYRQAESPTGFALARSHIK
LLSTEELRQIYDCPELELAKQFELEFLMNSLLETSEADPLYAAVMEYYEL
QGKITSNLHDVEKLRKGCAESQKQIWVRQPVTRTFSGTCGDGNVVQECVT
YDVIQVDPIKLEVAKTSLTGLYDLVCHAYTNNSITAKITKVKVDQIINDL
LTYPNLDGHSVVSLHHTQSGEALQCVSQLRRAISILFSFVRRPSPNANFD
KDLKEWLRKLIALQLLLATREDHWFLLFNILRCPNGVGSWAAQFLQLPGT
RAVRRGSQQNELPLDLNSPELNHCMAVLQILLMPVKKRNEYLKSQAQAHR
ELSDTPGATDRWIVVDSDGEDSHTPAGECVGLKESDLVALLNQMPFEKIF
TSALRIEKFLDDYIIEPDMITAQQMLAVVVFFSQLVKTIGEGLLTYNNER
YKQLAKRLGRLVRHTLQYVFDYNELFINNNLYKSSEMYERIQVELQALLV
RACGYIYRTRNLGTWQYFSTLPFGTLDAEVIWHLFYYLNVGFPTDLANDL
VSNAEAAFQAEDFWRKFDLANADVAPEDMYYLLQTFFEMANERNRSKDGS
LVKAICLHIFHIGYIHKSTREICYKTARDMLANLMDEDLFGCVLVQLKMR
YGEVDQAAYLFKALPLENWHPSMDTFEVLSNWLLHFDYQSSESQLARLII
SHLNWGLDCEGRLFLPHNIHVRMAHLVNEALNKYAPEVIGASGISESVRQ
VSSLIDSTQSSREQFTNWCWRMVSVLRLHLMDQGVESVRRTLQHPTEPLL
FIPELERMEMIFQGVNENRPLALYVGMLVSLHGHSIPLICQHGFILLQQL
LLDHRHAATIRCLELIVPLFLETPETLANCESFQRLITTLLNADRTYLKL
AKDMVYANSIGPILELLDNMLHHQIISYTRMVPELQFIVSP*

BS16789.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG14299-PC 2455 CG14299-PC 1..1029 1..1029 5335 100 Plus
CG14299-PD 2454 CG14299-PD 1..1028 1..1029 5318 99.9 Plus