Clone BS16792 Report

Search the DGRC for BS16792

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:167
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptMf-RB
Protein status:BS16792.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16792.3prime Sequence

917 bp (798 high quality bases) assembled on 2007-05-15

> BS16792.3prime
ATGGTCTAGAAAGCTTTTAGAATAAATCCTCTTCCTCAGGTGTCAAGGGT
CTAGCTGGGTGCTTGGACCACAAGTAGCGGTTCTTCACCGGCGACAAGTA
CGAATCCCGGGCTACGGGGCTCGAGGCACGGGGCACCGAGGTGGCGCGGA
AGGGCACCAGGTCATCCACGTCCCACCAGAAGGGATCGCGCACAATCGAG
GAGATCGGCAAGTTGGGGCTGGGGCTCAGCAGATCCCTGAAGCGGTTGCG
TGGGTGAAAGATGGGGAGTCCCTCAGCATCGTAGGCGACTTCGGTGGGAC
GGGGTCCCCAGCGACCGGCTTTCACGGGAGTGGGACTTGGCGAACCGGCG
CGCTCAAAGATACCGAGTGGCCGACTGGGCGCATCAGCTGGCGCCGAATC
AGCCTCGGCGATCGCGGGCAACTTACGTTCAAAGAGTTCGTCCAGCGGCT
CCAGGGAGCTGGCACGGAAGCTGGGCCGCGTGAACGGGGCCAAGCTGGTG
GCACGATCGAAGACCGAGGGTCCTCCGCGTGGCACGCTGCCCTCGCGGTT
CCAGTAGCTCGGCGGTGGCACGTACGGCTCGCTGCCGGCACGGGTCGTCC
TGGCAGGGCGGAACGGCGAGGCCGAGCGACGAGCCTTGTTGAGCTCAGCC
AGCAGCTTGTCCTCTGGCTCGTACTCCAGGGGCACCAGCGAGTTGGGCGT
GAGTGGCTTGTCCCTCAAGTAGAGACCATAGCGAGATGGGTACCTGCGCT
CGATCTCCTGCATGCGCTTCAGATGATCATTCCAGGCCTTCTCTGCGTCG
TAGTTAGCTGGAATTGTTCGGCTGTAGTGATGATCGTAGATGGCACGGGG
CGAGTAGCCGTAGGTGTCGCGGCTCACTGGCAGATATCTGTAGCCAGAGG
ACTGGACCCGCTCATTG

BS16792.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:15:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6803-PB 1098 Zeelin1-RB 198..1098 917..17 4455 99.7 Minus
CG6803-PD 939 Zeelin1-RD 198..689 917..426 2435 99.7 Minus
CG6803-PE 501 Zeelin1-RE 198..484 917..631 1410 99.6 Minus
CG6803-PC 507 Zeelin1-RC 198..481 917..634 1395 99.6 Minus
CG6803-PD 939 Zeelin1-RD 689..921 270..38 1140 99.5 Minus
CG6803-PA 474 Zeelin1-RA 302..462 792..632 805 100 Minus
CG6803-PA 474 Zeelin1-RA 198..301 917..814 495 99 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
Mf-RB 2110 CG6803-RB 312..1213 917..16 4480 99.8 Minus
Mf-RM 1939 CG553-RM 312..1191 917..38 4370 99.8 Minus
Mf-RL 1905 CG553-RL 278..1157 917..38 4370 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15173980..15174344 270..634 1825 100 Plus
3R 32079331 3R 15172600..15172831 40..271 1145 99.6 Plus
3R 32079331 3R 15176184..15176295 634..745 560 100 Plus
3R 32079331 3R 15178280..15178383 814..917 505 99 Plus
3R 32079331 3R 15176362..15176437 742..817 365 98.7 Plus
Blast to na_te.dros performed on 2015-02-13 06:58:26 has no hits.

BS16792.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:15:17 Download gff for BS16792.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6803-PB 198..1098 17..917 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:47:27 Download gff for BS16792.3prime
Subject Subject Range Query Range Percent Splice Strand
Mf-RB 312..1213 16..917 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:28:00 Download gff for BS16792.3prime
Subject Subject Range Query Range Percent Splice Strand
Mf-RB 312..1213 16..917 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:28:00 Download gff for BS16792.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15172083..15172106 16..39 100 <- Plus
3R 15172600..15172830 40..270 99 <- Plus
3R 15173981..15174343 271..633 100 <- Plus
3R 15176184..15176293 634..743 100 <- Plus
3R 15176364..15176433 744..813 100 <- Plus
3R 15178280..15178383 814..917 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:47:27 Download gff for BS16792.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10997805..10997828 16..39 100 <- Plus
arm_3R 10998322..10998552 40..270 99 <- Plus
arm_3R 10999703..11000065 271..633 100 <- Plus
arm_3R 11001906..11002015 634..743 100 <- Plus
arm_3R 11002086..11002155 744..813 100 <- Plus
arm_3R 11004002..11004105 814..917 99   Plus

BS16792.5prime Sequence

665 bp (526 high quality bases) assembled on 2007-05-15

> BS16792.5prime
GAAGTTATCAGTCGACATGTTCAAAAACCACTTGGAAATGATTGGGCGCA
ATGAGAGCCCCAGCAAGAAGGCGAAATTCTGGCAGTCCTACATCAGGTCC
CTGAAGGGCTCCGAGGATATCCGTGCCCACGAGGCGCCCCGTGCCTCTCG
TCCCTACAGCTCCTACCTGGACTCGCCCTCCTACAGGAGCATCTATGACG
AGCCCGCCACCGCCAATGAGCGCGTCCAGTCCTCTGGCTACAGATATCTG
CCAGTGAGCCGCGACACCTACGGCTACTCGCCCCGTGCCATCTACGATCA
TCACTACAGCCGAACAATTCCAGCTAACTACGACGCAGAGAAGGCCTGGA
ATGATCATCTGAAGCGCATGCAGGAGATCGAGCGCAGGTACCCATCTCGC
TATGGTCTCTACTTGAGGGACAAGCCACTCACGCCCAACTCGCTGGTGCC
CCTGGAGTACGAGCCAGAGGACAAGCTGCTGGCTGAGCTCAACAAGGCTC
GTCGCTCGGCCTCGCCGTTCCGCCCTGCCAGGACGACCCGTGCCGGCAGC
GAGCCGTACGTGCCACCGCCGAGCTACTGGAACCGCGAGGGCAGCGTGCC
ACGCGGAAGAACCTCGGTCCTCGATCGTGCCANCAGCTTGGCCCCGTTCA
CGCCGCCCAGCTTCC

BS16792.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG6803-PD 939 Zeelin1-RD 1..649 17..665 3126 99.2 Plus
CG6803-PB 1098 Zeelin1-RB 1..649 17..665 3126 99.2 Plus
CG6803-PE 501 Zeelin1-RE 1..484 17..500 2420 100 Plus
CG6803-PC 507 Zeelin1-RC 1..481 17..497 2405 100 Plus
CG6803-PA 474 Zeelin1-RA 1..301 17..317 1505 100 Plus
CG6803-PA 474 Zeelin1-RA 302..462 339..499 805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:55:28
Subject Length Description Subject Range Query Range Score Percent Strand
Mf-RM 1939 CG553-RM 115..763 17..665 3174 99.2 Plus
Mf-RL 1905 CG553-RL 81..729 17..665 3174 99.2 Plus
Mf-RJ 1954 CG6803-RJ 115..763 17..665 3174 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15178280..15178490 317..107 1055 100 Minus
3R 32079331 3R 15174176..15174344 665..497 774 97 Minus
3R 32079331 3R 15176184..15176295 497..386 560 100 Minus
3R 32079331 3R 15179038..15179129 108..17 460 100 Minus
3R 32079331 3R 15176362..15176437 389..314 365 98.7 Minus
Blast to na_te.dros performed on 2015-02-12 10:55:26 has no hits.

BS16792.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:10:09 Download gff for BS16792.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6803-PB 1..649 17..665 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:03 Download gff for BS16792.5prime
Subject Subject Range Query Range Percent Splice Strand
Mf-RJ 105..763 7..665 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:37 Download gff for BS16792.5prime
Subject Subject Range Query Range Percent Splice Strand
Mf-RJ 105..763 7..665 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:37 Download gff for BS16792.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15174176..15174343 498..665 97 <- Minus
3R 15176184..15176293 388..497 100 <- Minus
3R 15176364..15176433 318..387 100 <- Minus
3R 15178280..15178489 108..317 100 <- Minus
3R 15179039..15179139 7..107 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:03 Download gff for BS16792.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10999898..11000065 498..665 97 <- Minus
arm_3R 11001906..11002015 388..497 100 <- Minus
arm_3R 11002086..11002155 318..387 100 <- Minus
arm_3R 11004002..11004211 108..317 100 <- Minus
arm_3R 11004761..11004861 7..107 96   Minus

BS16792.complete Sequence

1130 bp assembled on 2007-05-07

GenBank Submission: FJ638192

> BS16792.complete
GAAGTTATCAGTCGACATGTTCAAAAACCACTTGGAAATGATTGGGCGCA
ATGAGAGCCCCAGCAAGAAGGCGAAATTCTGGCAGTCCTACATCAGGTCC
CTGAAGGGCTCCGAGGATATCCGTGCCCACGAGGCGCCCCGTGCCTCTCG
TCCCTACAGCTCCTACCTGGACTCGCCCTCCTACAGGAGCATCTATGACG
AGCCCGCCACCGCCAATGAGCGCGTCCAGTCCTCTGGCTACAGATATCTG
CCAGTGAGCCGCGACACCTACGGCTACTCGCCCCGTGCCATCTACGATCA
TCACTACAGCCGAACAATTCCAGCTAACTACGACGCAGAGAAGGCCTGGA
ATGATCATCTGAAGCGCATGCAGGAGATCGAGCGCAGGTACCCATCTCGC
TATGGTCTCTACTTGAGGGACAAGCCACTCACGCCCAACTCGCTGGTGCC
CCTGGAGTACGAGCCAGAGGACAAGCTGCTGGCTGAGCTCAACAAGGCTC
GTCGCTCGGCCTCGCCGTTCCGCCCTGCCAGGACGACCCGTGCCGGCAGC
GAGCCGTACGTGCCACCGCCGAGCTACTGGAACCGCGAGGGCAGCGTGCC
ACGCGGAGGACCCTCGGTCTTCGATCGTGCCACCAGCTTGGCCCCGTTCA
CGCGGCCCAGCTTCCGTGCCAGCTCCCTGGAGCCGCTGGACGAACTCTTT
GAACGTAAGTTGCCCGCGATCGCCGAGGCTGATTCGGCGCCAGCTGATGC
GCCCAGTCGGCCACTCGGTATCTTTGAGCGCGCCGGTTCGCCAAGTCCCA
CTCCCGTGAAAGCCGGTCGCTGGGGACCCCGTCCCACCGAAGTCGCCTAC
GATGCTGAGGGACTCCCCATCTTTCACCCACGCAACCGCTTCAGGGATCT
GCTGAGCCCCAGCCCCAACTTGCCGATCTCCTCGATTGTGCGCGATCCCT
TCTGGTGGGACGTGGATGACCTGGTGCCCTTCCGCGCCACCTCGGTGCCC
CGTGCCTCGAGCCCCGTAGCCCGGGATTCGTACTTGTCGCCGGTGAAGAA
CCGCTACTTGTGGTCCAAGCACCCAGCTAGACCCTTGACACCTGAGGAAG
AGGATTTATTCTAAAAGCTTTCTAGACCAT

BS16792.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
Mf-RB 1098 CG6803-PB 1..1098 17..1114 5475 99.9 Plus
Mf-RM 1095 CG6803-PM 1..1077 17..1093 5370 99.9 Plus
Mf-RL 1095 CG6803-PL 1..1077 17..1093 5370 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
Mf-RB 2110 CG6803-RB 115..1213 17..1115 5480 99.9 Plus
Mf-RM 1939 CG553-RM 115..1191 17..1093 5370 99.9 Plus
Mf-RL 1905 CG553-RL 81..1157 17..1093 5370 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:00:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15173980..15174344 861..497 1825 100 Minus
3R 32079331 3R 15172600..15172831 1091..860 1145 99.6 Minus
3R 32079331 3R 15178280..15178490 317..107 1055 100 Minus
3R 32079331 3R 15176184..15176295 497..386 560 100 Minus
3R 32079331 3R 15179038..15179129 108..17 460 100 Minus
3R 32079331 3R 15176362..15176437 389..314 365 98.7 Minus
Blast to na_te.dros performed on 2014-11-27 17:00:55 has no hits.

BS16792.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:57 Download gff for BS16792.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RB 1..1098 17..1114 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:00 Download gff for BS16792.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RB 105..1213 7..1115 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:24 Download gff for BS16792.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RB 120..1210 22..1112 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:57 Download gff for BS16792.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RB 105..1213 7..1115 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:26 Download gff for BS16792.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RB 120..1210 22..1112 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:26 Download gff for BS16792.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15172086..15172106 1092..1112 100 <- Minus
3R 15172600..15172830 861..1091 99 <- Minus
3R 15173981..15174343 498..860 100 <- Minus
3R 15176184..15176293 388..497 100 <- Minus
3R 15176364..15176433 318..387 100 <- Minus
3R 15178280..15178489 108..317 100 <- Minus
3R 15179039..15179124 22..107 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:24 Download gff for BS16792.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11004002..11004211 108..317 100 <- Minus
arm_3R 11004761..11004846 22..107 100   Minus
arm_3R 10997808..10997828 1092..1112 100 <- Minus
arm_3R 10998322..10998552 861..1091 99 <- Minus
arm_3R 10999703..11000065 498..860 100 <- Minus
arm_3R 11001906..11002015 388..497 100 <- Minus
arm_3R 11002086..11002155 318..387 100 <- Minus

BS16792.pep Sequence

Translation from 16 to 1113

> BS16792.pep
MFKNHLEMIGRNESPSKKAKFWQSYIRSLKGSEDIRAHEAPRASRPYSSY
LDSPSYRSIYDEPATANERVQSSGYRYLPVSRDTYGYSPRAIYDHHYSRT
IPANYDAEKAWNDHLKRMQEIERRYPSRYGLYLRDKPLTPNSLVPLEYEP
EDKLLAELNKARRSASPFRPARTTRAGSEPYVPPPSYWNREGSVPRGGPS
VFDRATSLAPFTRPSFRASSLEPLDELFERKLPAIAEADSAPADAPSRPL
GIFERAGSPSPTPVKAGRWGPRPTEVAYDAEGLPIFHPRNRFRDLLSPSP
NLPISSIVRDPFWWDVDDLVPFRATSVPRASSPVARDSYLSPVKNRYLWS
KHPARPLTPEEEDLF*

BS16792.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
Mf-PB 365 CG6803-PB 1..365 1..365 1953 100 Plus
Mf-PM 364 CG6803-PM 1..364 1..364 1923 98.9 Plus
Mf-PL 364 CG6803-PL 1..364 1..364 1923 98.9 Plus
Mf-PJ 313 CG6803-PJ 1..313 1..365 1615 85.8 Plus
Mf-PF 313 CG6803-PF 1..313 1..365 1615 85.8 Plus