Clone Sequence Records
BS16792.3prime Sequence
917 bp (798 high quality bases) assembled on 2007-05-15
> BS16792.3prime
ATGGTCTAGAAAGCTTTTAGAATAAATCCTCTTCCTCAGGTGTCAAGGGT
CTAGCTGGGTGCTTGGACCACAAGTAGCGGTTCTTCACCGGCGACAAGTA
CGAATCCCGGGCTACGGGGCTCGAGGCACGGGGCACCGAGGTGGCGCGGA
AGGGCACCAGGTCATCCACGTCCCACCAGAAGGGATCGCGCACAATCGAG
GAGATCGGCAAGTTGGGGCTGGGGCTCAGCAGATCCCTGAAGCGGTTGCG
TGGGTGAAAGATGGGGAGTCCCTCAGCATCGTAGGCGACTTCGGTGGGAC
GGGGTCCCCAGCGACCGGCTTTCACGGGAGTGGGACTTGGCGAACCGGCG
CGCTCAAAGATACCGAGTGGCCGACTGGGCGCATCAGCTGGCGCCGAATC
AGCCTCGGCGATCGCGGGCAACTTACGTTCAAAGAGTTCGTCCAGCGGCT
CCAGGGAGCTGGCACGGAAGCTGGGCCGCGTGAACGGGGCCAAGCTGGTG
GCACGATCGAAGACCGAGGGTCCTCCGCGTGGCACGCTGCCCTCGCGGTT
CCAGTAGCTCGGCGGTGGCACGTACGGCTCGCTGCCGGCACGGGTCGTCC
TGGCAGGGCGGAACGGCGAGGCCGAGCGACGAGCCTTGTTGAGCTCAGCC
AGCAGCTTGTCCTCTGGCTCGTACTCCAGGGGCACCAGCGAGTTGGGCGT
GAGTGGCTTGTCCCTCAAGTAGAGACCATAGCGAGATGGGTACCTGCGCT
CGATCTCCTGCATGCGCTTCAGATGATCATTCCAGGCCTTCTCTGCGTCG
TAGTTAGCTGGAATTGTTCGGCTGTAGTGATGATCGTAGATGGCACGGGG
CGAGTAGCCGTAGGTGTCGCGGCTCACTGGCAGATATCTGTAGCCAGAGG
ACTGGACCCGCTCATTG
BS16792.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:15:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6803-PB | 1098 | Zeelin1-RB | 198..1098 | 917..17 | 4455 | 99.7 | Minus |
CG6803-PD | 939 | Zeelin1-RD | 198..689 | 917..426 | 2435 | 99.7 | Minus |
CG6803-PE | 501 | Zeelin1-RE | 198..484 | 917..631 | 1410 | 99.6 | Minus |
CG6803-PC | 507 | Zeelin1-RC | 198..481 | 917..634 | 1395 | 99.6 | Minus |
CG6803-PD | 939 | Zeelin1-RD | 689..921 | 270..38 | 1140 | 99.5 | Minus |
CG6803-PA | 474 | Zeelin1-RA | 302..462 | 792..632 | 805 | 100 | Minus |
CG6803-PA | 474 | Zeelin1-RA | 198..301 | 917..814 | 495 | 99 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:58:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mf-RB | 2110 | CG6803-RB | 312..1213 | 917..16 | 4480 | 99.8 | Minus |
Mf-RM | 1939 | CG553-RM | 312..1191 | 917..38 | 4370 | 99.8 | Minus |
Mf-RL | 1905 | CG553-RL | 278..1157 | 917..38 | 4370 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:58:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15173980..15174344 | 270..634 | 1825 | 100 | Plus |
3R | 32079331 | 3R | 15172600..15172831 | 40..271 | 1145 | 99.6 | Plus |
3R | 32079331 | 3R | 15176184..15176295 | 634..745 | 560 | 100 | Plus |
3R | 32079331 | 3R | 15178280..15178383 | 814..917 | 505 | 99 | Plus |
3R | 32079331 | 3R | 15176362..15176437 | 742..817 | 365 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:58:26 has no hits.
BS16792.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:15:17 Download gff for
BS16792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6803-PB | 198..1098 | 17..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:47:27 Download gff for
BS16792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RB | 312..1213 | 16..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:28:00 Download gff for
BS16792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RB | 312..1213 | 16..917 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:28:00 Download gff for
BS16792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15172083..15172106 | 16..39 | 100 | <- | Plus |
3R | 15172600..15172830 | 40..270 | 99 | <- | Plus |
3R | 15173981..15174343 | 271..633 | 100 | <- | Plus |
3R | 15176184..15176293 | 634..743 | 100 | <- | Plus |
3R | 15176364..15176433 | 744..813 | 100 | <- | Plus |
3R | 15178280..15178383 | 814..917 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:47:27 Download gff for
BS16792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10997805..10997828 | 16..39 | 100 | <- | Plus |
arm_3R | 10998322..10998552 | 40..270 | 99 | <- | Plus |
arm_3R | 10999703..11000065 | 271..633 | 100 | <- | Plus |
arm_3R | 11001906..11002015 | 634..743 | 100 | <- | Plus |
arm_3R | 11002086..11002155 | 744..813 | 100 | <- | Plus |
arm_3R | 11004002..11004105 | 814..917 | 99 | | Plus |
BS16792.5prime Sequence
665 bp (526 high quality bases) assembled on 2007-05-15
> BS16792.5prime
GAAGTTATCAGTCGACATGTTCAAAAACCACTTGGAAATGATTGGGCGCA
ATGAGAGCCCCAGCAAGAAGGCGAAATTCTGGCAGTCCTACATCAGGTCC
CTGAAGGGCTCCGAGGATATCCGTGCCCACGAGGCGCCCCGTGCCTCTCG
TCCCTACAGCTCCTACCTGGACTCGCCCTCCTACAGGAGCATCTATGACG
AGCCCGCCACCGCCAATGAGCGCGTCCAGTCCTCTGGCTACAGATATCTG
CCAGTGAGCCGCGACACCTACGGCTACTCGCCCCGTGCCATCTACGATCA
TCACTACAGCCGAACAATTCCAGCTAACTACGACGCAGAGAAGGCCTGGA
ATGATCATCTGAAGCGCATGCAGGAGATCGAGCGCAGGTACCCATCTCGC
TATGGTCTCTACTTGAGGGACAAGCCACTCACGCCCAACTCGCTGGTGCC
CCTGGAGTACGAGCCAGAGGACAAGCTGCTGGCTGAGCTCAACAAGGCTC
GTCGCTCGGCCTCGCCGTTCCGCCCTGCCAGGACGACCCGTGCCGGCAGC
GAGCCGTACGTGCCACCGCCGAGCTACTGGAACCGCGAGGGCAGCGTGCC
ACGCGGAAGAACCTCGGTCCTCGATCGTGCCANCAGCTTGGCCCCGTTCA
CGCCGCCCAGCTTCC
BS16792.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:10:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6803-PD | 939 | Zeelin1-RD | 1..649 | 17..665 | 3126 | 99.2 | Plus |
CG6803-PB | 1098 | Zeelin1-RB | 1..649 | 17..665 | 3126 | 99.2 | Plus |
CG6803-PE | 501 | Zeelin1-RE | 1..484 | 17..500 | 2420 | 100 | Plus |
CG6803-PC | 507 | Zeelin1-RC | 1..481 | 17..497 | 2405 | 100 | Plus |
CG6803-PA | 474 | Zeelin1-RA | 1..301 | 17..317 | 1505 | 100 | Plus |
CG6803-PA | 474 | Zeelin1-RA | 302..462 | 339..499 | 805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:55:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mf-RM | 1939 | CG553-RM | 115..763 | 17..665 | 3174 | 99.2 | Plus |
Mf-RL | 1905 | CG553-RL | 81..729 | 17..665 | 3174 | 99.2 | Plus |
Mf-RJ | 1954 | CG6803-RJ | 115..763 | 17..665 | 3174 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15178280..15178490 | 317..107 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 15174176..15174344 | 665..497 | 774 | 97 | Minus |
3R | 32079331 | 3R | 15176184..15176295 | 497..386 | 560 | 100 | Minus |
3R | 32079331 | 3R | 15179038..15179129 | 108..17 | 460 | 100 | Minus |
3R | 32079331 | 3R | 15176362..15176437 | 389..314 | 365 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:55:26 has no hits.
BS16792.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:10:09 Download gff for
BS16792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6803-PB | 1..649 | 17..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:03 Download gff for
BS16792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RJ | 105..763 | 7..665 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:37 Download gff for
BS16792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RJ | 105..763 | 7..665 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:37 Download gff for
BS16792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15174176..15174343 | 498..665 | 97 | <- | Minus |
3R | 15176184..15176293 | 388..497 | 100 | <- | Minus |
3R | 15176364..15176433 | 318..387 | 100 | <- | Minus |
3R | 15178280..15178489 | 108..317 | 100 | <- | Minus |
3R | 15179039..15179139 | 7..107 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:03 Download gff for
BS16792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10999898..11000065 | 498..665 | 97 | <- | Minus |
arm_3R | 11001906..11002015 | 388..497 | 100 | <- | Minus |
arm_3R | 11002086..11002155 | 318..387 | 100 | <- | Minus |
arm_3R | 11004002..11004211 | 108..317 | 100 | <- | Minus |
arm_3R | 11004761..11004861 | 7..107 | 96 | | Minus |
BS16792.complete Sequence
1130 bp assembled on 2007-05-07
GenBank Submission: FJ638192
> BS16792.complete
GAAGTTATCAGTCGACATGTTCAAAAACCACTTGGAAATGATTGGGCGCA
ATGAGAGCCCCAGCAAGAAGGCGAAATTCTGGCAGTCCTACATCAGGTCC
CTGAAGGGCTCCGAGGATATCCGTGCCCACGAGGCGCCCCGTGCCTCTCG
TCCCTACAGCTCCTACCTGGACTCGCCCTCCTACAGGAGCATCTATGACG
AGCCCGCCACCGCCAATGAGCGCGTCCAGTCCTCTGGCTACAGATATCTG
CCAGTGAGCCGCGACACCTACGGCTACTCGCCCCGTGCCATCTACGATCA
TCACTACAGCCGAACAATTCCAGCTAACTACGACGCAGAGAAGGCCTGGA
ATGATCATCTGAAGCGCATGCAGGAGATCGAGCGCAGGTACCCATCTCGC
TATGGTCTCTACTTGAGGGACAAGCCACTCACGCCCAACTCGCTGGTGCC
CCTGGAGTACGAGCCAGAGGACAAGCTGCTGGCTGAGCTCAACAAGGCTC
GTCGCTCGGCCTCGCCGTTCCGCCCTGCCAGGACGACCCGTGCCGGCAGC
GAGCCGTACGTGCCACCGCCGAGCTACTGGAACCGCGAGGGCAGCGTGCC
ACGCGGAGGACCCTCGGTCTTCGATCGTGCCACCAGCTTGGCCCCGTTCA
CGCGGCCCAGCTTCCGTGCCAGCTCCCTGGAGCCGCTGGACGAACTCTTT
GAACGTAAGTTGCCCGCGATCGCCGAGGCTGATTCGGCGCCAGCTGATGC
GCCCAGTCGGCCACTCGGTATCTTTGAGCGCGCCGGTTCGCCAAGTCCCA
CTCCCGTGAAAGCCGGTCGCTGGGGACCCCGTCCCACCGAAGTCGCCTAC
GATGCTGAGGGACTCCCCATCTTTCACCCACGCAACCGCTTCAGGGATCT
GCTGAGCCCCAGCCCCAACTTGCCGATCTCCTCGATTGTGCGCGATCCCT
TCTGGTGGGACGTGGATGACCTGGTGCCCTTCCGCGCCACCTCGGTGCCC
CGTGCCTCGAGCCCCGTAGCCCGGGATTCGTACTTGTCGCCGGTGAAGAA
CCGCTACTTGTGGTCCAAGCACCCAGCTAGACCCTTGACACCTGAGGAAG
AGGATTTATTCTAAAAGCTTTCTAGACCAT
BS16792.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:00:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mf-RB | 1098 | CG6803-PB | 1..1098 | 17..1114 | 5475 | 99.9 | Plus |
Mf-RM | 1095 | CG6803-PM | 1..1077 | 17..1093 | 5370 | 99.9 | Plus |
Mf-RL | 1095 | CG6803-PL | 1..1077 | 17..1093 | 5370 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:00:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mf-RB | 2110 | CG6803-RB | 115..1213 | 17..1115 | 5480 | 99.9 | Plus |
Mf-RM | 1939 | CG553-RM | 115..1191 | 17..1093 | 5370 | 99.9 | Plus |
Mf-RL | 1905 | CG553-RL | 81..1157 | 17..1093 | 5370 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:00:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15173980..15174344 | 861..497 | 1825 | 100 | Minus |
3R | 32079331 | 3R | 15172600..15172831 | 1091..860 | 1145 | 99.6 | Minus |
3R | 32079331 | 3R | 15178280..15178490 | 317..107 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 15176184..15176295 | 497..386 | 560 | 100 | Minus |
3R | 32079331 | 3R | 15179038..15179129 | 108..17 | 460 | 100 | Minus |
3R | 32079331 | 3R | 15176362..15176437 | 389..314 | 365 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:00:55 has no hits.
BS16792.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:57 Download gff for
BS16792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RB | 1..1098 | 17..1114 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:00 Download gff for
BS16792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RB | 105..1213 | 7..1115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:24 Download gff for
BS16792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RB | 120..1210 | 22..1112 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:57 Download gff for
BS16792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RB | 105..1213 | 7..1115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:26 Download gff for
BS16792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RB | 120..1210 | 22..1112 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:26 Download gff for
BS16792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15172086..15172106 | 1092..1112 | 100 | <- | Minus |
3R | 15172600..15172830 | 861..1091 | 99 | <- | Minus |
3R | 15173981..15174343 | 498..860 | 100 | <- | Minus |
3R | 15176184..15176293 | 388..497 | 100 | <- | Minus |
3R | 15176364..15176433 | 318..387 | 100 | <- | Minus |
3R | 15178280..15178489 | 108..317 | 100 | <- | Minus |
3R | 15179039..15179124 | 22..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:24 Download gff for
BS16792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11004002..11004211 | 108..317 | 100 | <- | Minus |
arm_3R | 11004761..11004846 | 22..107 | 100 | | Minus |
arm_3R | 10997808..10997828 | 1092..1112 | 100 | <- | Minus |
arm_3R | 10998322..10998552 | 861..1091 | 99 | <- | Minus |
arm_3R | 10999703..11000065 | 498..860 | 100 | <- | Minus |
arm_3R | 11001906..11002015 | 388..497 | 100 | <- | Minus |
arm_3R | 11002086..11002155 | 318..387 | 100 | <- | Minus |
BS16792.pep Sequence
Translation from 16 to 1113
> BS16792.pep
MFKNHLEMIGRNESPSKKAKFWQSYIRSLKGSEDIRAHEAPRASRPYSSY
LDSPSYRSIYDEPATANERVQSSGYRYLPVSRDTYGYSPRAIYDHHYSRT
IPANYDAEKAWNDHLKRMQEIERRYPSRYGLYLRDKPLTPNSLVPLEYEP
EDKLLAELNKARRSASPFRPARTTRAGSEPYVPPPSYWNREGSVPRGGPS
VFDRATSLAPFTRPSFRASSLEPLDELFERKLPAIAEADSAPADAPSRPL
GIFERAGSPSPTPVKAGRWGPRPTEVAYDAEGLPIFHPRNRFRDLLSPSP
NLPISSIVRDPFWWDVDDLVPFRATSVPRASSPVARDSYLSPVKNRYLWS
KHPARPLTPEEEDLF*
BS16792.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mf-PB | 365 | CG6803-PB | 1..365 | 1..365 | 1953 | 100 | Plus |
Mf-PM | 364 | CG6803-PM | 1..364 | 1..364 | 1923 | 98.9 | Plus |
Mf-PL | 364 | CG6803-PL | 1..364 | 1..364 | 1923 | 98.9 | Plus |
Mf-PJ | 313 | CG6803-PJ | 1..313 | 1..365 | 1615 | 85.8 | Plus |
Mf-PF | 313 | CG6803-PF | 1..313 | 1..365 | 1615 | 85.8 | Plus |