Clone BS16793 Report

Search the DGRC for BS16793

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:167
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG13678-RA
Protein status:BS16793.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16793.3prime Sequence

417 bp (417 high quality bases) assembled on 2007-05-15

> BS16793.3prime
ATGGTCTAGAAAGCTTTTACTTCTTCAGCAGCAGAGGAGCGGCAGCAGCG
GCGACATAGGGACGAGCCACATAGGGCGAGCTGTAGGCCAGGGGCGAGGT
GTAGGCGGCGGCGTAGGGCGTGGCAAATCGGGTGTAGGGAGCGGTGTAGG
CGGCAGCCAGAGGAGCAGCAATGGGAGCGGTATAGGCGGCGGCAACTGGA
GCGGCATAGGAAGCTGGGAAGGCGGCGCTGTGGGCCACCGAGTGGGCGGT
GTAGCTGGAGGCGTAGGGAGCCACGTAGGCGGCACTGCCCACCACAGCCG
GAGCGGTGTAGGCCAGAGGAGCGGCGGCCAGAGGAGCCAAAATTCCAGGC
TTGGCAGCAGCCACAGCCACAACAGCGAAGAAGATAGCAGCGAATTTGAA
CATGTCGACTGATAACT

BS16793.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:15:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13678-PA 387 CG13678-RA 1..387 403..17 1935 100 Minus
CG13679-PB 360 CG13679-RB 21..192 383..212 685 95.9 Minus
CG13679-PA 438 CG13679-RA 99..270 383..212 685 95.9 Minus
CG13674-PA 414 CG13674-RA 67..177 322..212 530 99 Minus
CG13679-PB 360 CG13679-RB 274..326 118..66 240 98.1 Minus
CG13679-PA 438 CG13679-RA 352..404 118..66 240 98.1 Minus
CG13674-PA 414 CG13674-RA 21..78 383..326 190 93.1 Minus
CG13679-PB 360 CG13679-RB 315..360 62..17 155 93.4 Minus
CG13679-PA 438 CG13679-RA 409..438 46..17 150 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13678-RA 561 CG13678-RA 61..450 405..16 1950 100 Minus
CG13679-RB 489 CG13679-RB 88..393 383..66 825 85.4 Minus
CG13674-RB 559 CG13674-RB 87..248 383..207 560 88.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8222467..8222842 391..16 1880 100 Minus
3L 28110227 3L 8202944..8203249 383..66 775 83.6 Minus
3L 28110227 3L 8218671..8218786 207..322 550 98.3 Plus
3L 28110227 3L 8218775..8218832 326..383 230 93.1 Plus
Blast to na_te.dros performed 2015-02-10 15:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 974..1037 248..185 104 62.5 Minus

BS16793.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:15:28 Download gff for BS16793.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13678-PA 1..387 17..403 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:23:00 Download gff for BS16793.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13678-RA 52..450 16..417 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:43 Download gff for BS16793.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13678-RA 52..450 16..417 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:43 Download gff for BS16793.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8222467..8222842 16..391 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:23:00 Download gff for BS16793.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8215567..8215942 16..391 100   Minus

BS16793.5prime Sequence

417 bp (417 high quality bases) assembled on 2007-05-15

> BS16793.5prime
GAAGTTATCAGTCGACATGTTCAAATTCGCTGCTATCTTCTTCGCTGTTG
TGGCTGTGGCTGCTGCCAAGCCTGGAATTTTGGCTCCTCTGGCCGCCGCT
CCTCTGGCCTACACCGCTCCGGCTGTGGTGGGCAGTGCCGCCTACGTGGC
TCCCTACGCCTCCAGCTACACCGCCCACTCGGTGGCCCACAGCGCCGCCT
TCCCAGCTTCCTATGCCGCTCCAGTTGCCGCCGCCTATACCGCTCCCATT
GCTGCTCCTCTGGCTGCCGCCTACACCGCTCCCTACACCCGATTTGCCAC
GCCCTACGCCGCCGCCTACACCTCGCCCCTGGCCTACAGCTCGCCCTATG
TGGCTCGTCCCTATGTCGCCGCTGCTGCCGCTCCTCTGCTGCTGAAGAAG
TAAAAGCTTTCTAGACC

BS16793.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13678-PA 387 CG13678-RA 1..387 17..403 1935 100 Plus
CG13679-PB 360 CG13679-RB 21..192 37..208 685 95.9 Plus
CG13679-PA 438 CG13679-RA 99..270 37..208 685 95.9 Plus
CG13674-PA 414 CG13674-RA 67..177 98..208 530 99 Plus
CG13679-PB 360 CG13679-RB 274..326 302..354 240 98.1 Plus
CG13679-PA 438 CG13679-RA 352..404 302..354 240 98.1 Plus
CG13674-PA 414 CG13674-RA 21..78 37..94 190 93.1 Plus
CG13679-PB 360 CG13679-RB 315..360 358..403 155 93.4 Plus
CG13679-PA 438 CG13679-RA 409..438 374..403 150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG13678-RA 561 CG13678-RA 61..450 15..404 1950 100 Plus
CG13679-RB 489 CG13679-RB 88..393 37..354 825 85.4 Plus
CG13674-RB 559 CG13674-RB 87..248 37..213 560 88.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8222467..8222842 29..404 1880 100 Plus
3L 28110227 3L 8202944..8203249 37..354 775 83.6 Plus
3L 28110227 3L 8218671..8218786 213..98 550 98.3 Minus
3L 28110227 3L 8218775..8218832 94..37 230 93.1 Minus
Blast to na_te.dros performed 2015-02-11 02:31:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 974..1037 172..235 104 62.5 Plus

BS16793.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:10:19 Download gff for BS16793.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13678-PA 1..387 17..403 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:00:58 Download gff for BS16793.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13678-RA 52..450 2..404 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:15:55 Download gff for BS16793.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13678-RA 52..450 2..404 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:15:55 Download gff for BS16793.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8222467..8222842 29..404 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:00:58 Download gff for BS16793.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8215567..8215942 29..404 100   Plus

BS16793.complete Sequence

419 bp assembled on 2007-05-07

GenBank Submission: FJ638193

> BS16793.complete
GAAGTTATCAGTCGACATGTTCAAATTCGCTGCTATCTTCTTCGCTGTTG
TGGCTGTGGCTGCTGCCAAGCCTGGAATTTTGGCTCCTCTGGCCGCCGCT
CCTCTGGCCTACACCGCTCCGGCTGTGGTGGGCAGTGCCGCCTACGTGGC
TCCCTACGCCTCCAGCTACACCGCCCACTCGGTGGCCCACAGCGCCGCCT
TCCCAGCTTCCTATGCCGCTCCAGTTGCCGCCGCCTATACCGCTCCCATT
GCTGCTCCTCTGGCTGCCGCCTACACCGCTCCCTACACCCGATTTGCCAC
GCCCTACGCCGCCGCCTACACCTCGCCCCTGGCCTACAGCTCGCCCTATG
TGGCTCGTCCCTATGTCGCCGCTGCTGCCGCTCCTCTGCTGCTGAAGAAG
TAAAAGCTTTCTAGACCAT

BS16793.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG13678-RA 387 CG13678-PA 1..387 17..403 1935 100 Plus
CG13679-RB 360 CG13679-PB 21..326 37..354 775 83.6 Plus
CG13674-RB 414 CG13674-PB 67..182 98..213 550 98.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG13678-RA 561 CG13678-RA 61..450 15..404 1950 100 Plus
CG13679-RB 489 CG13679-RB 88..393 37..354 775 83.6 Plus
CG13674-RB 559 CG13674-RB 133..248 98..213 550 98.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:25:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8222467..8222842 29..404 1880 100 Plus
3L 28110227 3L 8202944..8203249 37..354 775 83.6 Plus
3L 28110227 3L 8218671..8218786 213..98 550 98.3 Minus
3L 28110227 3L 8218775..8218832 94..37 230 93.1 Minus
Blast to na_te.dros performed 2014-11-27 15:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 974..1037 172..235 104 62.5 Plus

BS16793.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:58 Download gff for BS16793.complete
Subject Subject Range Query Range Percent Splice Strand
CG13678-RA 1..387 17..403 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:02 Download gff for BS16793.complete
Subject Subject Range Query Range Percent Splice Strand
CG13678-RA 50..448 2..404 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:40:58 Download gff for BS16793.complete
Subject Subject Range Query Range Percent Splice Strand
CG13678-RA 68..447 22..401 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:58 Download gff for BS16793.complete
Subject Subject Range Query Range Percent Splice Strand
CG13678-RA 50..448 2..404 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:19 Download gff for BS16793.complete
Subject Subject Range Query Range Percent Splice Strand
CG13678-RA 68..447 22..401 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:19 Download gff for BS16793.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8222459..8222839 22..401 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:40:58 Download gff for BS16793.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8215559..8215939 22..401 98   Plus

BS16793.pep Sequence

Translation from 16 to 402

> BS16793.pep
MFKFAAIFFAVVAVAAAKPGILAPLAAAPLAYTAPAVVGSAAYVAPYASS
YTAHSVAHSAAFPASYAAPVAAAYTAPIAAPLAAAYTAPYTRFATPYAAA
YTSPLAYSSPYVARPYVAAAAAPLLLKK*

BS16793.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG13678-PA 128 CG13678-PA 1..128 1..128 634 100 Plus
CG13679-PB 119 CG13679-PB 2..119 3..128 439 77.1 Plus
CG13674-PB 137 CG13674-PB 2..137 3..128 362 63.7 Plus
CG13674-PA 137 CG13674-PA 2..137 3..128 362 63.7 Plus
CG32214-PC 116 CG32214-PC 1..116 1..126 217 49.2 Plus