Clone Sequence Records
BS16793.3prime Sequence
417 bp (417 high quality bases) assembled on 2007-05-15
> BS16793.3prime
ATGGTCTAGAAAGCTTTTACTTCTTCAGCAGCAGAGGAGCGGCAGCAGCG
GCGACATAGGGACGAGCCACATAGGGCGAGCTGTAGGCCAGGGGCGAGGT
GTAGGCGGCGGCGTAGGGCGTGGCAAATCGGGTGTAGGGAGCGGTGTAGG
CGGCAGCCAGAGGAGCAGCAATGGGAGCGGTATAGGCGGCGGCAACTGGA
GCGGCATAGGAAGCTGGGAAGGCGGCGCTGTGGGCCACCGAGTGGGCGGT
GTAGCTGGAGGCGTAGGGAGCCACGTAGGCGGCACTGCCCACCACAGCCG
GAGCGGTGTAGGCCAGAGGAGCGGCGGCCAGAGGAGCCAAAATTCCAGGC
TTGGCAGCAGCCACAGCCACAACAGCGAAGAAGATAGCAGCGAATTTGAA
CATGTCGACTGATAACT
BS16793.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:15:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13678-PA | 387 | CG13678-RA | 1..387 | 403..17 | 1935 | 100 | Minus |
CG13679-PB | 360 | CG13679-RB | 21..192 | 383..212 | 685 | 95.9 | Minus |
CG13679-PA | 438 | CG13679-RA | 99..270 | 383..212 | 685 | 95.9 | Minus |
CG13674-PA | 414 | CG13674-RA | 67..177 | 322..212 | 530 | 99 | Minus |
CG13679-PB | 360 | CG13679-RB | 274..326 | 118..66 | 240 | 98.1 | Minus |
CG13679-PA | 438 | CG13679-RA | 352..404 | 118..66 | 240 | 98.1 | Minus |
CG13674-PA | 414 | CG13674-RA | 21..78 | 383..326 | 190 | 93.1 | Minus |
CG13679-PB | 360 | CG13679-RB | 315..360 | 62..17 | 155 | 93.4 | Minus |
CG13679-PA | 438 | CG13679-RA | 409..438 | 46..17 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:30:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13678-RA | 561 | CG13678-RA | 61..450 | 405..16 | 1950 | 100 | Minus |
CG13679-RB | 489 | CG13679-RB | 88..393 | 383..66 | 825 | 85.4 | Minus |
CG13674-RB | 559 | CG13674-RB | 87..248 | 383..207 | 560 | 88.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:30:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8222467..8222842 | 391..16 | 1880 | 100 | Minus |
3L | 28110227 | 3L | 8202944..8203249 | 383..66 | 775 | 83.6 | Minus |
3L | 28110227 | 3L | 8218671..8218786 | 207..322 | 550 | 98.3 | Plus |
3L | 28110227 | 3L | 8218775..8218832 | 326..383 | 230 | 93.1 | Plus |
Blast to na_te.dros performed 2015-02-10 15:30:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 974..1037 | 248..185 | 104 | 62.5 | Minus |
BS16793.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:15:28 Download gff for
BS16793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13678-PA | 1..387 | 17..403 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:23:00 Download gff for
BS16793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13678-RA | 52..450 | 16..417 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:43 Download gff for
BS16793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13678-RA | 52..450 | 16..417 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:43 Download gff for
BS16793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8222467..8222842 | 16..391 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:23:00 Download gff for
BS16793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8215567..8215942 | 16..391 | 100 | | Minus |
BS16793.5prime Sequence
417 bp (417 high quality bases) assembled on 2007-05-15
> BS16793.5prime
GAAGTTATCAGTCGACATGTTCAAATTCGCTGCTATCTTCTTCGCTGTTG
TGGCTGTGGCTGCTGCCAAGCCTGGAATTTTGGCTCCTCTGGCCGCCGCT
CCTCTGGCCTACACCGCTCCGGCTGTGGTGGGCAGTGCCGCCTACGTGGC
TCCCTACGCCTCCAGCTACACCGCCCACTCGGTGGCCCACAGCGCCGCCT
TCCCAGCTTCCTATGCCGCTCCAGTTGCCGCCGCCTATACCGCTCCCATT
GCTGCTCCTCTGGCTGCCGCCTACACCGCTCCCTACACCCGATTTGCCAC
GCCCTACGCCGCCGCCTACACCTCGCCCCTGGCCTACAGCTCGCCCTATG
TGGCTCGTCCCTATGTCGCCGCTGCTGCCGCTCCTCTGCTGCTGAAGAAG
TAAAAGCTTTCTAGACC
BS16793.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:10:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13678-PA | 387 | CG13678-RA | 1..387 | 17..403 | 1935 | 100 | Plus |
CG13679-PB | 360 | CG13679-RB | 21..192 | 37..208 | 685 | 95.9 | Plus |
CG13679-PA | 438 | CG13679-RA | 99..270 | 37..208 | 685 | 95.9 | Plus |
CG13674-PA | 414 | CG13674-RA | 67..177 | 98..208 | 530 | 99 | Plus |
CG13679-PB | 360 | CG13679-RB | 274..326 | 302..354 | 240 | 98.1 | Plus |
CG13679-PA | 438 | CG13679-RA | 352..404 | 302..354 | 240 | 98.1 | Plus |
CG13674-PA | 414 | CG13674-RA | 21..78 | 37..94 | 190 | 93.1 | Plus |
CG13679-PB | 360 | CG13679-RB | 315..360 | 358..403 | 155 | 93.4 | Plus |
CG13679-PA | 438 | CG13679-RA | 409..438 | 374..403 | 150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:31:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13678-RA | 561 | CG13678-RA | 61..450 | 15..404 | 1950 | 100 | Plus |
CG13679-RB | 489 | CG13679-RB | 88..393 | 37..354 | 825 | 85.4 | Plus |
CG13674-RB | 559 | CG13674-RB | 87..248 | 37..213 | 560 | 88.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:31:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8222467..8222842 | 29..404 | 1880 | 100 | Plus |
3L | 28110227 | 3L | 8202944..8203249 | 37..354 | 775 | 83.6 | Plus |
3L | 28110227 | 3L | 8218671..8218786 | 213..98 | 550 | 98.3 | Minus |
3L | 28110227 | 3L | 8218775..8218832 | 94..37 | 230 | 93.1 | Minus |
Blast to na_te.dros performed 2015-02-11 02:31:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 974..1037 | 172..235 | 104 | 62.5 | Plus |
BS16793.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:10:19 Download gff for
BS16793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13678-PA | 1..387 | 17..403 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:00:58 Download gff for
BS16793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13678-RA | 52..450 | 2..404 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:15:55 Download gff for
BS16793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13678-RA | 52..450 | 2..404 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:15:55 Download gff for
BS16793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8222467..8222842 | 29..404 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:00:58 Download gff for
BS16793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8215567..8215942 | 29..404 | 100 | | Plus |
BS16793.complete Sequence
419 bp assembled on 2007-05-07
GenBank Submission: FJ638193
> BS16793.complete
GAAGTTATCAGTCGACATGTTCAAATTCGCTGCTATCTTCTTCGCTGTTG
TGGCTGTGGCTGCTGCCAAGCCTGGAATTTTGGCTCCTCTGGCCGCCGCT
CCTCTGGCCTACACCGCTCCGGCTGTGGTGGGCAGTGCCGCCTACGTGGC
TCCCTACGCCTCCAGCTACACCGCCCACTCGGTGGCCCACAGCGCCGCCT
TCCCAGCTTCCTATGCCGCTCCAGTTGCCGCCGCCTATACCGCTCCCATT
GCTGCTCCTCTGGCTGCCGCCTACACCGCTCCCTACACCCGATTTGCCAC
GCCCTACGCCGCCGCCTACACCTCGCCCCTGGCCTACAGCTCGCCCTATG
TGGCTCGTCCCTATGTCGCCGCTGCTGCCGCTCCTCTGCTGCTGAAGAAG
TAAAAGCTTTCTAGACCAT
BS16793.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:25:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13678-RA | 387 | CG13678-PA | 1..387 | 17..403 | 1935 | 100 | Plus |
CG13679-RB | 360 | CG13679-PB | 21..326 | 37..354 | 775 | 83.6 | Plus |
CG13674-RB | 414 | CG13674-PB | 67..182 | 98..213 | 550 | 98.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:25:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13678-RA | 561 | CG13678-RA | 61..450 | 15..404 | 1950 | 100 | Plus |
CG13679-RB | 489 | CG13679-RB | 88..393 | 37..354 | 775 | 83.6 | Plus |
CG13674-RB | 559 | CG13674-RB | 133..248 | 98..213 | 550 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:25:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8222467..8222842 | 29..404 | 1880 | 100 | Plus |
3L | 28110227 | 3L | 8202944..8203249 | 37..354 | 775 | 83.6 | Plus |
3L | 28110227 | 3L | 8218671..8218786 | 213..98 | 550 | 98.3 | Minus |
3L | 28110227 | 3L | 8218775..8218832 | 94..37 | 230 | 93.1 | Minus |
Blast to na_te.dros performed 2014-11-27 15:25:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 974..1037 | 172..235 | 104 | 62.5 | Plus |
BS16793.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:58 Download gff for
BS16793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13678-RA | 1..387 | 17..403 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:02 Download gff for
BS16793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13678-RA | 50..448 | 2..404 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:40:58 Download gff for
BS16793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13678-RA | 68..447 | 22..401 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:58 Download gff for
BS16793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13678-RA | 50..448 | 2..404 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:19 Download gff for
BS16793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13678-RA | 68..447 | 22..401 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:19 Download gff for
BS16793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8222459..8222839 | 22..401 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:40:58 Download gff for
BS16793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8215559..8215939 | 22..401 | 98 | | Plus |
BS16793.pep Sequence
Translation from 16 to 402
> BS16793.pep
MFKFAAIFFAVVAVAAAKPGILAPLAAAPLAYTAPAVVGSAAYVAPYASS
YTAHSVAHSAAFPASYAAPVAAAYTAPIAAPLAAAYTAPYTRFATPYAAA
YTSPLAYSSPYVARPYVAAAAAPLLLKK*
BS16793.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:26:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13678-PA | 128 | CG13678-PA | 1..128 | 1..128 | 634 | 100 | Plus |
CG13679-PB | 119 | CG13679-PB | 2..119 | 3..128 | 439 | 77.1 | Plus |
CG13674-PB | 137 | CG13674-PB | 2..137 | 3..128 | 362 | 63.7 | Plus |
CG13674-PA | 137 | CG13674-PA | 2..137 | 3..128 | 362 | 63.7 | Plus |
CG32214-PC | 116 | CG32214-PC | 1..116 | 1..126 | 217 | 49.2 | Plus |