Clone Sequence Records
BS16794.3prime Sequence
453 bp (453 high quality bases) assembled on 2007-05-15
> BS16794.3prime
ATGGTCTAGAAAGCTTTCACTAATCCTCGTCATCTTCATCTGGCGGATCT
GTGGCATAGGTCAGTTCGTTCAGGTAGAACCATTTGGGTGACTCTGTGCA
GTTAAAGTTGTAGTCCCAATCACAGATTCTGTACTCCTGGTTAAAGCTCG
TCTCATTGGCGCACAGATGGGGAATCCGATTGCCCTCCTCGTCGCACATG
TGAAAGATCTGGCAATTGTACTCCATGTCGGCATAGAAGCCCACAGAACG
CCTCTTGCAATCGAATGAGAATGTTATATTATCTAAATTCGTCCATTCCT
TCGTCTTGTGATTTTGAAATACTGGACTGGCTGGCTCTTGGCCTTGAACC
GCAATGGCGGCCAGCAAAATAGGACCTAGTAAAACGCCGGAAAGCCATAA
AATTCTATAACTGTAAACCATTTTTGTGGTGTTGAACATGTCGACTGATA
ACT
BS16794.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:18:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14959-PC | 423 | CG14959-RC | 1..419 | 439..21 | 2095 | 100 | Minus |
CG14959-PA | 426 | CG14959-RA | 1..354 | 439..86 | 1770 | 100 | Minus |
CG14959-PB | 324 | CG14959-RB | 1..257 | 439..183 | 1285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:09:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ckd-RE | 1145 | CG14959-RE | 555..978 | 439..16 | 2105 | 99.8 | Minus |
ckd-RD | 1246 | CG14959-RD | 317..740 | 439..16 | 2105 | 99.8 | Minus |
ckd-RC | 1340 | CG14959-RC | 750..1173 | 439..16 | 2105 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:09:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3267119..3267287 | 377..209 | 845 | 100 | Minus |
3L | 28110227 | 3L | 3267422..3267547 | 211..86 | 630 | 100 | Minus |
3L | 28110227 | 3L | 3267609..3267678 | 85..16 | 335 | 98.6 | Minus |
3L | 28110227 | 3L | 3266651..3266716 | 439..374 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:09:59 has no hits.
BS16794.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:18:03 Download gff for
BS16794.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14959-PC | 1..423 | 17..439 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:45 Download gff for
BS16794.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ckd-RC | 739..1179 | 10..449 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:10:22 Download gff for
BS16794.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ckd-RC | 739..1179 | 10..449 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:10:22 Download gff for
BS16794.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3266640..3266714 | 376..449 | 94 | -> | Minus |
3L | 3267121..3267287 | 209..375 | 100 | -> | Minus |
3L | 3267425..3267547 | 86..208 | 100 | -> | Minus |
3L | 3267609..3267684 | 10..85 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:45 Download gff for
BS16794.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3266640..3266714 | 376..449 | 94 | -> | Minus |
arm_3L | 3267121..3267287 | 209..375 | 100 | -> | Minus |
arm_3L | 3267425..3267547 | 86..208 | 100 | -> | Minus |
arm_3L | 3267609..3267684 | 10..85 | 96 | | Minus |
BS16794.5prime Sequence
453 bp (453 high quality bases) assembled on 2007-05-15
> BS16794.5prime
GAAGTTATCAGTCGACATGTTCAACACCACAAAAATGGTTTACAGTTATA
GAATTTTATGGCTTTCCGGCGTTTTACTAGGTCCTATTTTGCTGGCCGCC
ATTGCGGTTCAAGGCCAAGAGCCAGCCAGTCCAGTATTTCAAAATCACAA
GACGAAGGAATGGACGAATTTAGATAATATAACATTCTCATTCGATTGCA
AGAGGCGTTCTGTGGGCTTCTATGCCGACATGGAGTACAATTGCCAGATC
TTTCACATGTGCGACGAGGAGGGCAATCGGATTCCCCATCTGTGCGCCAA
TGAGACGAGCTTTAACCAGGAGTACAGAATCTGTGATTGGGACTACAACT
TTAACTGCACAGAGTCACCCAAATGGTTCTACCTGAACGAACTGACCTAT
GCCACAGATCCGCCAGATGAAGATGACGAGGATTACTGAAAGCTTTCTAG
ACC
BS16794.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:12:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14959-PC | 423 | CG14959-RC | 1..423 | 17..439 | 2115 | 100 | Plus |
CG14959-PA | 426 | CG14959-RA | 1..354 | 17..370 | 1770 | 100 | Plus |
CG14959-PB | 324 | CG14959-RB | 1..257 | 17..273 | 1285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:02:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ckd-RE | 1145 | CG14959-RE | 555..978 | 17..440 | 2120 | 100 | Plus |
ckd-RD | 1246 | CG14959-RD | 317..740 | 17..440 | 2120 | 100 | Plus |
ckd-RC | 1340 | CG14959-RC | 750..1173 | 17..440 | 2120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:02:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3267119..3267287 | 79..247 | 845 | 100 | Plus |
3L | 28110227 | 3L | 3267422..3267547 | 245..370 | 630 | 100 | Plus |
3L | 28110227 | 3L | 3267609..3267678 | 371..440 | 350 | 100 | Plus |
3L | 28110227 | 3L | 3266651..3266716 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:02:28 has no hits.
BS16794.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:12:16 Download gff for
BS16794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14959-PC | 1..423 | 17..439 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:56:33 Download gff for
BS16794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ckd-RC | 739..1179 | 7..446 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:22:41 Download gff for
BS16794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ckd-RC | 739..1179 | 7..446 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:22:41 Download gff for
BS16794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3267121..3267287 | 81..247 | 100 | -> | Plus |
3L | 3267425..3267547 | 248..370 | 100 | -> | Plus |
3L | 3267609..3267684 | 371..446 | 97 | | Plus |
3L | 3266640..3266714 | 7..80 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:56:33 Download gff for
BS16794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3266640..3266714 | 7..80 | 94 | -> | Plus |
arm_3L | 3267121..3267287 | 81..247 | 100 | -> | Plus |
arm_3L | 3267425..3267547 | 248..370 | 100 | -> | Plus |
arm_3L | 3267609..3267684 | 371..446 | 97 | | Plus |
BS16794.complete Sequence
455 bp assembled on 2007-05-07
GenBank Submission: FJ638194
> BS16794.complete
GAAGTTATCAGTCGACATGTTCAACACCACAAAAATGGTTTACAGTTATA
GAATTTTATGGCTTTCCGGCGTTTTACTAGGTCCTATTTTGCTGGCCGCC
ATTGCGGTTCAAGGCCAAGAGCCAGCCAGTCCAGTATTTCAAAATCACAA
GACGAAGGAATGGACGAATTTAGATAATATAACATTCTCATTCGATTGCA
AGAGGCGTTCTGTGGGCTTCTATGCCGACATGGAGTACAATTGCCAGATC
TTTCACATGTGCGACGAGGAGGGCAATCGGATTCCCCATCTGTGCGCCAA
TGAGACGAGCTTTAACCAGGAGTACAGAATCTGTGATTGGGACTACAACT
TTAACTGCACAGAGTCACCCAAATGGTTCTACCTGAACGAACTGACCTAT
GCCACAGATCCGCCAGATGAAGATGACGAGGATTACTGAAAGCTTTCTAG
ACCAT
BS16794.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:35:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ckd-RE | 423 | CG14959-PE | 1..423 | 17..439 | 2115 | 100 | Plus |
ckd-RD | 423 | CG14959-PD | 1..423 | 17..439 | 2115 | 100 | Plus |
ckd-RC | 423 | CG14959-PC | 1..423 | 17..439 | 2115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:35:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ckd-RE | 1145 | CG14959-RE | 555..978 | 17..440 | 2120 | 100 | Plus |
ckd-RD | 1246 | CG14959-RD | 317..740 | 17..440 | 2120 | 100 | Plus |
ckd-RC | 1340 | CG14959-RC | 750..1173 | 17..440 | 2120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:35:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3267119..3267287 | 79..247 | 845 | 100 | Plus |
3L | 28110227 | 3L | 3267422..3267547 | 245..370 | 630 | 100 | Plus |
3L | 28110227 | 3L | 3267609..3267678 | 371..440 | 350 | 100 | Plus |
3L | 28110227 | 3L | 3266651..3266716 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:35:29 has no hits.
BS16794.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:00 Download gff for
BS16794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14959-RC | 1..423 | 17..439 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:04 Download gff for
BS16794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14959-RC | 739..1179 | 7..446 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:56 Download gff for
BS16794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ckd-RC | 755..1171 | 22..438 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:00 Download gff for
BS16794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14959-RC | 739..1179 | 7..446 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:24 Download gff for
BS16794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ckd-RC | 755..1171 | 22..438 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:24 Download gff for
BS16794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3266656..3266714 | 22..80 | 100 | -> | Plus |
3L | 3267121..3267287 | 81..247 | 100 | -> | Plus |
3L | 3267425..3267547 | 248..370 | 100 | -> | Plus |
3L | 3267609..3267676 | 371..438 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:56 Download gff for
BS16794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3266656..3266714 | 22..80 | 100 | -> | Plus |
arm_3L | 3267121..3267287 | 81..247 | 100 | -> | Plus |
arm_3L | 3267425..3267547 | 248..370 | 100 | -> | Plus |
arm_3L | 3267609..3267676 | 371..438 | 100 | | Plus |
BS16794.pep Sequence
Translation from 16 to 438
> BS16794.pep
MFNTTKMVYSYRILWLSGVLLGPILLAAIAVQGQEPASPVFQNHKTKEWT
NLDNITFSFDCKRRSVGFYADMEYNCQIFHMCDEEGNRIPHLCANETSFN
QEYRICDWDYNFNCTESPKWFYLNELTYATDPPDEDDEDY*
BS16794.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ckd-PE | 140 | CG14959-PE | 1..140 | 1..140 | 789 | 100 | Plus |
ckd-PD | 140 | CG14959-PD | 1..140 | 1..140 | 789 | 100 | Plus |
ckd-PC | 140 | CG14959-PC | 1..140 | 1..140 | 789 | 100 | Plus |
CG13675-PC | 151 | CG13675-PC | 69..139 | 58..128 | 173 | 42.3 | Plus |
CG13675-PD | 355 | CG13675-PD | 69..139 | 58..128 | 173 | 42.3 | Plus |