Clone BS16794 Report

Search the DGRC for BS16794

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:167
Well:94
Vector:pDNR-Dual
Associated Gene/Transcriptckd-RC
Protein status:BS16794.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16794.3prime Sequence

453 bp (453 high quality bases) assembled on 2007-05-15

> BS16794.3prime
ATGGTCTAGAAAGCTTTCACTAATCCTCGTCATCTTCATCTGGCGGATCT
GTGGCATAGGTCAGTTCGTTCAGGTAGAACCATTTGGGTGACTCTGTGCA
GTTAAAGTTGTAGTCCCAATCACAGATTCTGTACTCCTGGTTAAAGCTCG
TCTCATTGGCGCACAGATGGGGAATCCGATTGCCCTCCTCGTCGCACATG
TGAAAGATCTGGCAATTGTACTCCATGTCGGCATAGAAGCCCACAGAACG
CCTCTTGCAATCGAATGAGAATGTTATATTATCTAAATTCGTCCATTCCT
TCGTCTTGTGATTTTGAAATACTGGACTGGCTGGCTCTTGGCCTTGAACC
GCAATGGCGGCCAGCAAAATAGGACCTAGTAAAACGCCGGAAAGCCATAA
AATTCTATAACTGTAAACCATTTTTGTGGTGTTGAACATGTCGACTGATA
ACT

BS16794.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:18:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG14959-PC 423 CG14959-RC 1..419 439..21 2095 100 Minus
CG14959-PA 426 CG14959-RA 1..354 439..86 1770 100 Minus
CG14959-PB 324 CG14959-RB 1..257 439..183 1285 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
ckd-RE 1145 CG14959-RE 555..978 439..16 2105 99.8 Minus
ckd-RD 1246 CG14959-RD 317..740 439..16 2105 99.8 Minus
ckd-RC 1340 CG14959-RC 750..1173 439..16 2105 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3267119..3267287 377..209 845 100 Minus
3L 28110227 3L 3267422..3267547 211..86 630 100 Minus
3L 28110227 3L 3267609..3267678 85..16 335 98.6 Minus
3L 28110227 3L 3266651..3266716 439..374 330 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:09:59 has no hits.

BS16794.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:18:03 Download gff for BS16794.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14959-PC 1..423 17..439 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:45 Download gff for BS16794.3prime
Subject Subject Range Query Range Percent Splice Strand
ckd-RC 739..1179 10..449 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:10:22 Download gff for BS16794.3prime
Subject Subject Range Query Range Percent Splice Strand
ckd-RC 739..1179 10..449 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:10:22 Download gff for BS16794.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3266640..3266714 376..449 94 -> Minus
3L 3267121..3267287 209..375 100 -> Minus
3L 3267425..3267547 86..208 100 -> Minus
3L 3267609..3267684 10..85 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:45 Download gff for BS16794.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3266640..3266714 376..449 94 -> Minus
arm_3L 3267121..3267287 209..375 100 -> Minus
arm_3L 3267425..3267547 86..208 100 -> Minus
arm_3L 3267609..3267684 10..85 96   Minus

BS16794.5prime Sequence

453 bp (453 high quality bases) assembled on 2007-05-15

> BS16794.5prime
GAAGTTATCAGTCGACATGTTCAACACCACAAAAATGGTTTACAGTTATA
GAATTTTATGGCTTTCCGGCGTTTTACTAGGTCCTATTTTGCTGGCCGCC
ATTGCGGTTCAAGGCCAAGAGCCAGCCAGTCCAGTATTTCAAAATCACAA
GACGAAGGAATGGACGAATTTAGATAATATAACATTCTCATTCGATTGCA
AGAGGCGTTCTGTGGGCTTCTATGCCGACATGGAGTACAATTGCCAGATC
TTTCACATGTGCGACGAGGAGGGCAATCGGATTCCCCATCTGTGCGCCAA
TGAGACGAGCTTTAACCAGGAGTACAGAATCTGTGATTGGGACTACAACT
TTAACTGCACAGAGTCACCCAAATGGTTCTACCTGAACGAACTGACCTAT
GCCACAGATCCGCCAGATGAAGATGACGAGGATTACTGAAAGCTTTCTAG
ACC

BS16794.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:12:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG14959-PC 423 CG14959-RC 1..423 17..439 2115 100 Plus
CG14959-PA 426 CG14959-RA 1..354 17..370 1770 100 Plus
CG14959-PB 324 CG14959-RB 1..257 17..273 1285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
ckd-RE 1145 CG14959-RE 555..978 17..440 2120 100 Plus
ckd-RD 1246 CG14959-RD 317..740 17..440 2120 100 Plus
ckd-RC 1340 CG14959-RC 750..1173 17..440 2120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3267119..3267287 79..247 845 100 Plus
3L 28110227 3L 3267422..3267547 245..370 630 100 Plus
3L 28110227 3L 3267609..3267678 371..440 350 100 Plus
3L 28110227 3L 3266651..3266716 17..82 330 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:02:28 has no hits.

BS16794.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:12:16 Download gff for BS16794.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14959-PC 1..423 17..439 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:56:33 Download gff for BS16794.5prime
Subject Subject Range Query Range Percent Splice Strand
ckd-RC 739..1179 7..446 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:22:41 Download gff for BS16794.5prime
Subject Subject Range Query Range Percent Splice Strand
ckd-RC 739..1179 7..446 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:22:41 Download gff for BS16794.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3267121..3267287 81..247 100 -> Plus
3L 3267425..3267547 248..370 100 -> Plus
3L 3267609..3267684 371..446 97   Plus
3L 3266640..3266714 7..80 94 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:56:33 Download gff for BS16794.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3266640..3266714 7..80 94 -> Plus
arm_3L 3267121..3267287 81..247 100 -> Plus
arm_3L 3267425..3267547 248..370 100 -> Plus
arm_3L 3267609..3267684 371..446 97   Plus

BS16794.complete Sequence

455 bp assembled on 2007-05-07

GenBank Submission: FJ638194

> BS16794.complete
GAAGTTATCAGTCGACATGTTCAACACCACAAAAATGGTTTACAGTTATA
GAATTTTATGGCTTTCCGGCGTTTTACTAGGTCCTATTTTGCTGGCCGCC
ATTGCGGTTCAAGGCCAAGAGCCAGCCAGTCCAGTATTTCAAAATCACAA
GACGAAGGAATGGACGAATTTAGATAATATAACATTCTCATTCGATTGCA
AGAGGCGTTCTGTGGGCTTCTATGCCGACATGGAGTACAATTGCCAGATC
TTTCACATGTGCGACGAGGAGGGCAATCGGATTCCCCATCTGTGCGCCAA
TGAGACGAGCTTTAACCAGGAGTACAGAATCTGTGATTGGGACTACAACT
TTAACTGCACAGAGTCACCCAAATGGTTCTACCTGAACGAACTGACCTAT
GCCACAGATCCGCCAGATGAAGATGACGAGGATTACTGAAAGCTTTCTAG
ACCAT

BS16794.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:35:31
Subject Length Description Subject Range Query Range Score Percent Strand
ckd-RE 423 CG14959-PE 1..423 17..439 2115 100 Plus
ckd-RD 423 CG14959-PD 1..423 17..439 2115 100 Plus
ckd-RC 423 CG14959-PC 1..423 17..439 2115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
ckd-RE 1145 CG14959-RE 555..978 17..440 2120 100 Plus
ckd-RD 1246 CG14959-RD 317..740 17..440 2120 100 Plus
ckd-RC 1340 CG14959-RC 750..1173 17..440 2120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:35:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3267119..3267287 79..247 845 100 Plus
3L 28110227 3L 3267422..3267547 245..370 630 100 Plus
3L 28110227 3L 3267609..3267678 371..440 350 100 Plus
3L 28110227 3L 3266651..3266716 17..82 330 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:35:29 has no hits.

BS16794.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:00 Download gff for BS16794.complete
Subject Subject Range Query Range Percent Splice Strand
CG14959-RC 1..423 17..439 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:04 Download gff for BS16794.complete
Subject Subject Range Query Range Percent Splice Strand
CG14959-RC 739..1179 7..446 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:56 Download gff for BS16794.complete
Subject Subject Range Query Range Percent Splice Strand
ckd-RC 755..1171 22..438 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:00 Download gff for BS16794.complete
Subject Subject Range Query Range Percent Splice Strand
CG14959-RC 739..1179 7..446 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:24 Download gff for BS16794.complete
Subject Subject Range Query Range Percent Splice Strand
ckd-RC 755..1171 22..438 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:24 Download gff for BS16794.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3266656..3266714 22..80 100 -> Plus
3L 3267121..3267287 81..247 100 -> Plus
3L 3267425..3267547 248..370 100 -> Plus
3L 3267609..3267676 371..438 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:56 Download gff for BS16794.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3266656..3266714 22..80 100 -> Plus
arm_3L 3267121..3267287 81..247 100 -> Plus
arm_3L 3267425..3267547 248..370 100 -> Plus
arm_3L 3267609..3267676 371..438 100   Plus

BS16794.pep Sequence

Translation from 16 to 438

> BS16794.pep
MFNTTKMVYSYRILWLSGVLLGPILLAAIAVQGQEPASPVFQNHKTKEWT
NLDNITFSFDCKRRSVGFYADMEYNCQIFHMCDEEGNRIPHLCANETSFN
QEYRICDWDYNFNCTESPKWFYLNELTYATDPPDEDDEDY*

BS16794.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
ckd-PE 140 CG14959-PE 1..140 1..140 789 100 Plus
ckd-PD 140 CG14959-PD 1..140 1..140 789 100 Plus
ckd-PC 140 CG14959-PC 1..140 1..140 789 100 Plus
CG13675-PC 151 CG13675-PC 69..139 58..128 173 42.3 Plus
CG13675-PD 355 CG13675-PD 69..139 58..128 173 42.3 Plus