Clone Sequence Records
BS16802.3prime Sequence
816 bp (761 high quality bases) assembled on 2007-05-15
> BS16802.3prime
ATGGTCTAGAAAGCTTCTAGGTACTCCGACCAGCGCCTGACCCCGCTGAC
CTGGCGAACTGCAGCAATGCAGGCGGCAGCCAAAAGGGATGGCAGATCGT
TGGCAAATTGTACAATGTATAATCCGCCATGCGAAGGAGCAACTGCGCCA
AAATGGACAGCATCTCTTCGAAGCTTATATATCGCTGGTACGGCTGGGTG
TGATGGTTCCGCTCGTACTCATCCAACATCTCGATGTAGTTCTTGAAATC
GGAGCGAGTGAGAAAACTGCAGGCGAAGAGCTCCACAAAACTGGCGGTGG
TGGGACGTATTAGCTCGAAGTTCAGGAAGCACAGGATCTTCCTTTCCACA
GCCTTGTACTCGAATGCCGTATAGGCGTTCTTGACCAATCGGTTCATTTC
GCTGTAGCGCGGAATAAACGCATCCGTGTTTTCGATCTGCGCAGCTATAT
GAAGACAAGTGATGGCCACCAGGAGCAATTTGTCCGGACGGATTTTGTAG
TAATCAACAAAGCGATCCATATAGTAGACGGCCAGGTGCAAAGCACAGCG
ACTAAGCTTGTGGGCGCTGGTCGCCAGTTTGAGCAACTGCAGCATTCTTC
GGCGCTCGTTCAGCTGCGGCGAAAGGTAAAACAAAGGCCGACGGCTGAGT
TCTTGCTCCCTCATGGTCAAAAATATATCCCGGGCATAGTCGGTGAGCCA
GTGCGTCTTAGCCAGGCGCTCGACATCTGCTTGCGGGCAAGTTTTCTTCA
ATTTGCGGTCGACGACGAAGATGTTCTGCTCGGCAGCCACTTTCTGCTCC
ATGTCGACTGATAACT
BS16802.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:23:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10308-PB | 786 | CycJ-RB | 1..786 | 802..17 | 3930 | 100 | Minus |
CG10308-PA | 1161 | CycJ-RA | 1..694 | 802..109 | 3470 | 100 | Minus |
CG10308-PA | 1161 | CycJ-RA | 702..793 | 108..17 | 460 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:31:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycJ-RB | 1471 | CG10308-RB | 112..897 | 802..17 | 3930 | 100 | Minus |
CycJ-RA | 1478 | CG10308-RA | 112..904 | 802..17 | 3850 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:31:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3466949..3467372 | 532..109 | 2120 | 100 | Minus |
3L | 28110227 | 3L | 3466684..3466872 | 720..532 | 945 | 100 | Minus |
3L | 28110227 | 3L | 3467433..3467524 | 108..17 | 460 | 100 | Minus |
3L | 28110227 | 3L | 3466539..3466622 | 802..719 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:31:45 has no hits.
BS16802.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:23:40 Download gff for
BS16802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10308-PB | 1..786 | 17..802 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:49:44 Download gff for
BS16802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycJ-RB | 112..897 | 17..802 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:15:51 Download gff for
BS16802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycJ-RB | 112..897 | 17..802 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:15:51 Download gff for
BS16802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3466539..3466622 | 719..802 | 100 | -> | Minus |
3L | 3466686..3466872 | 532..718 | 100 | -> | Minus |
3L | 3466950..3467372 | 109..531 | 100 | -> | Minus |
3L | 3467433..3467524 | 17..108 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:49:44 Download gff for
BS16802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3466539..3466622 | 719..802 | 100 | -> | Minus |
arm_3L | 3466686..3466872 | 532..718 | 100 | -> | Minus |
arm_3L | 3466950..3467372 | 109..531 | 100 | -> | Minus |
arm_3L | 3467433..3467524 | 17..108 | 100 | | Minus |
BS16802.5prime Sequence
816 bp (816 high quality bases) assembled on 2007-05-15
> BS16802.5prime
GAAGTTATCAGTCGACATGGAGCAGAAAGTGGCTGCCGAGCAGAACATCT
TCGTCGTCGACCGCAAATTGAAGAAAACTTGCCCGCAAGCAGATGTCGAG
CGCCTGGCTAAGACGCACTGGCTCACCGACTATGCCCGGGATATATTTTT
GACCATGAGGGAGCAAGAACTCAGCCGTCGGCCTTTGTTTTACCTTTCGC
CGCAGCTGAACGAGCGCCGAAGAATGCTGCAGTTGCTCAAACTGGCGACC
AGCGCCCACAAGCTTAGTCGCTGTGCTTTGCACCTGGCCGTCTACTATAT
GGATCGCTTTGTTGATTACTACAAAATCCGTCCGGACAAATTGCTCCTGG
TGGCCATCACTTGTCTTCATATAGCTGCGCAGATCGAAAACACGGATGCG
TTTATTCCGCGCTACAGCGAAATGAACCGATTGGTCAAGAACGCCTATAC
GGCATTCGAGTACAAGGCTGTGGAAAGGAAGATCCTGTGCTTCCTGAACT
TCGAGCTAATACGTCCCACCACCGCCAGTTTTGTGGAGCTCTTCGCCTGC
AGTTTTCTCACTCGCTCCGATTTCAAGAACTACATCGAGATGTTGGATGA
GTACGAGCGGAACCATCACACCCAGCCGTACCAGCGATATATAAGCTTCG
AAGAGATGCTGTCCATTTTGGCGCAGTTGCTCCTTCGCATGGCGGATTAT
ACATTGTACAATTTGCCAACGATCTGCCATCCCTTTTGGCTGCCGCCTGC
ATTGCTGCAGTTCGCCAGGTCAGCGGGGTCAGGCGCTGGTCGGAGTACCT
AGAAGCTTTCTAGACC
BS16802.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:18:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10308-PB | 786 | CycJ-RB | 1..786 | 17..802 | 3930 | 100 | Plus |
CG10308-PA | 1161 | CycJ-RA | 1..694 | 17..710 | 3470 | 100 | Plus |
CG10308-PA | 1161 | CycJ-RA | 702..793 | 711..802 | 460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:09:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycJ-RB | 1471 | CG10308-RB | 112..897 | 17..802 | 3930 | 100 | Plus |
CycJ-RA | 1478 | CG10308-RA | 112..904 | 17..802 | 3850 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:09:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3466949..3467372 | 287..710 | 2120 | 100 | Plus |
3L | 28110227 | 3L | 3466684..3466872 | 99..287 | 945 | 100 | Plus |
3L | 28110227 | 3L | 3467433..3467524 | 711..802 | 460 | 100 | Plus |
3L | 28110227 | 3L | 3466539..3466622 | 17..100 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:09:54 has no hits.
BS16802.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:18:35 Download gff for
BS16802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10308-PB | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:51:05 Download gff for
BS16802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycJ-RB | 112..897 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:11:27 Download gff for
BS16802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycJ-RB | 112..897 | 17..802 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:11:27 Download gff for
BS16802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3466686..3466872 | 101..287 | 100 | -> | Plus |
3L | 3466539..3466622 | 17..100 | 100 | -> | Plus |
3L | 3466950..3467372 | 288..710 | 100 | -> | Plus |
3L | 3467433..3467524 | 711..802 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:51:05 Download gff for
BS16802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3466539..3466622 | 17..100 | 100 | -> | Plus |
arm_3L | 3466686..3466872 | 101..287 | 100 | -> | Plus |
arm_3L | 3466950..3467372 | 288..710 | 100 | -> | Plus |
arm_3L | 3467433..3467524 | 711..802 | 100 | | Plus |
BS16802.complete Sequence
818 bp assembled on 2007-05-07
GenBank Submission: FJ638195
> BS16802.complete
GAAGTTATCAGTCGACATGGAGCAGAAAGTGGCTGCCGAGCAGAACATCT
TCGTCGTCGACCGCAAATTGAAGAAAACTTGCCCGCAAGCAGATGTCGAG
CGCCTGGCTAAGACGCACTGGCTCACCGACTATGCCCGGGATATATTTTT
GACCATGAGGGAGCAAGAACTCAGCCGTCGGCCTTTGTTTTACCTTTCGC
CGCAGCTGAACGAGCGCCGAAGAATGCTGCAGTTGCTCAAACTGGCGACC
AGCGCCCACAAGCTTAGTCGCTGTGCTTTGCACCTGGCCGTCTACTATAT
GGATCGCTTTGTTGATTACTACAAAATCCGTCCGGACAAATTGCTCCTGG
TGGCCATCACTTGTCTTCATATAGCTGCGCAGATCGAAAACACGGATGCG
TTTATTCCGCGCTACAGCGAAATGAACCGATTGGTCAAGAACGCCTATAC
GGCATTCGAGTACAAGGCTGTGGAAAGGAAGATCCTGTGCTTCCTGAACT
TCGAGCTAATACGTCCCACCACCGCCAGTTTTGTGGAGCTCTTCGCCTGC
AGTTTTCTCACTCGCTCCGATTTCAAGAACTACATCGAGATGTTGGATGA
GTACGAGCGGAACCATCACACCCAGCCGTACCAGCGATATATAAGCTTCG
AAGAGATGCTGTCCATTTTGGCGCAGTTGCTCCTTCGCATGGCGGATTAT
ACATTGTACAATTTGCCAACGATCTGCCATCCCTTTTGGCTGCCGCCTGC
ATTGCTGCAGTTCGCCAGGTCAGCGGGGTCAGGCGCTGGTCGGAGTACCT
AGAAGCTTTCTAGACCAT
BS16802.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:57:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycJ-RB | 786 | CG10308-PB | 1..786 | 17..802 | 3930 | 100 | Plus |
CycJ-RA | 1161 | CG10308-PA | 1..793 | 17..802 | 3825 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:57:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycJ-RB | 1471 | CG10308-RB | 112..897 | 17..802 | 3930 | 100 | Plus |
CycJ-RA | 1478 | CG10308-RA | 112..904 | 17..802 | 3825 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:57:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3466949..3467372 | 287..710 | 2120 | 100 | Plus |
3L | 28110227 | 3L | 3466684..3466872 | 99..287 | 945 | 100 | Plus |
3L | 28110227 | 3L | 3467433..3467524 | 711..802 | 460 | 100 | Plus |
3L | 28110227 | 3L | 3466539..3466622 | 17..100 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:57:54 has no hits.
BS16802.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:01 Download gff for
BS16802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycJ-RB | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:05 Download gff for
BS16802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycJ-RB | 126..911 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:13 Download gff for
BS16802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycJ-RB | 112..897 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:01 Download gff for
BS16802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycJ-RB | 126..911 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:29:37 Download gff for
BS16802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycJ-RB | 112..897 | 17..802 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:29:37 Download gff for
BS16802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3466539..3466622 | 17..100 | 100 | -> | Plus |
3L | 3466686..3466872 | 101..287 | 100 | -> | Plus |
3L | 3466950..3467372 | 288..710 | 100 | -> | Plus |
3L | 3467433..3467524 | 711..802 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:13 Download gff for
BS16802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3466539..3466622 | 17..100 | 100 | -> | Plus |
arm_3L | 3466686..3466872 | 101..287 | 100 | -> | Plus |
arm_3L | 3466950..3467372 | 288..710 | 100 | -> | Plus |
arm_3L | 3467433..3467524 | 711..802 | 100 | | Plus |
BS16802.pep Sequence
Translation from 16 to 801
> BS16802.pep
MEQKVAAEQNIFVVDRKLKKTCPQADVERLAKTHWLTDYARDIFLTMREQ
ELSRRPLFYLSPQLNERRRMLQLLKLATSAHKLSRCALHLAVYYMDRFVD
YYKIRPDKLLLVAITCLHIAAQIENTDAFIPRYSEMNRLVKNAYTAFEYK
AVERKILCFLNFELIRPTTASFVELFACSFLTRSDFKNYIEMLDEYERNH
HTQPYQRYISFEEMLSILAQLLLRMADYTLYNLPTICHPFWLPPALLQFA
RSAGSGAGRST*
BS16802.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycJ-PB | 261 | CG10308-PB | 1..261 | 1..261 | 1356 | 100 | Plus |
CycJ-PA | 386 | CG10308-PA | 1..231 | 1..231 | 1191 | 100 | Plus |