Clone BS16802 Report

Search the DGRC for BS16802

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:168
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptCycJ-RB
Protein status:BS16802.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16802.3prime Sequence

816 bp (761 high quality bases) assembled on 2007-05-15

> BS16802.3prime
ATGGTCTAGAAAGCTTCTAGGTACTCCGACCAGCGCCTGACCCCGCTGAC
CTGGCGAACTGCAGCAATGCAGGCGGCAGCCAAAAGGGATGGCAGATCGT
TGGCAAATTGTACAATGTATAATCCGCCATGCGAAGGAGCAACTGCGCCA
AAATGGACAGCATCTCTTCGAAGCTTATATATCGCTGGTACGGCTGGGTG
TGATGGTTCCGCTCGTACTCATCCAACATCTCGATGTAGTTCTTGAAATC
GGAGCGAGTGAGAAAACTGCAGGCGAAGAGCTCCACAAAACTGGCGGTGG
TGGGACGTATTAGCTCGAAGTTCAGGAAGCACAGGATCTTCCTTTCCACA
GCCTTGTACTCGAATGCCGTATAGGCGTTCTTGACCAATCGGTTCATTTC
GCTGTAGCGCGGAATAAACGCATCCGTGTTTTCGATCTGCGCAGCTATAT
GAAGACAAGTGATGGCCACCAGGAGCAATTTGTCCGGACGGATTTTGTAG
TAATCAACAAAGCGATCCATATAGTAGACGGCCAGGTGCAAAGCACAGCG
ACTAAGCTTGTGGGCGCTGGTCGCCAGTTTGAGCAACTGCAGCATTCTTC
GGCGCTCGTTCAGCTGCGGCGAAAGGTAAAACAAAGGCCGACGGCTGAGT
TCTTGCTCCCTCATGGTCAAAAATATATCCCGGGCATAGTCGGTGAGCCA
GTGCGTCTTAGCCAGGCGCTCGACATCTGCTTGCGGGCAAGTTTTCTTCA
ATTTGCGGTCGACGACGAAGATGTTCTGCTCGGCAGCCACTTTCTGCTCC
ATGTCGACTGATAACT

BS16802.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:23:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG10308-PB 786 CycJ-RB 1..786 802..17 3930 100 Minus
CG10308-PA 1161 CycJ-RA 1..694 802..109 3470 100 Minus
CG10308-PA 1161 CycJ-RA 702..793 108..17 460 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:31:47
Subject Length Description Subject Range Query Range Score Percent Strand
CycJ-RB 1471 CG10308-RB 112..897 802..17 3930 100 Minus
CycJ-RA 1478 CG10308-RA 112..904 802..17 3850 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:31:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3466949..3467372 532..109 2120 100 Minus
3L 28110227 3L 3466684..3466872 720..532 945 100 Minus
3L 28110227 3L 3467433..3467524 108..17 460 100 Minus
3L 28110227 3L 3466539..3466622 802..719 420 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:31:45 has no hits.

BS16802.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:23:40 Download gff for BS16802.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10308-PB 1..786 17..802 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:49:44 Download gff for BS16802.3prime
Subject Subject Range Query Range Percent Splice Strand
CycJ-RB 112..897 17..802 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:15:51 Download gff for BS16802.3prime
Subject Subject Range Query Range Percent Splice Strand
CycJ-RB 112..897 17..802 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:15:51 Download gff for BS16802.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3466539..3466622 719..802 100 -> Minus
3L 3466686..3466872 532..718 100 -> Minus
3L 3466950..3467372 109..531 100 -> Minus
3L 3467433..3467524 17..108 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:49:44 Download gff for BS16802.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3466539..3466622 719..802 100 -> Minus
arm_3L 3466686..3466872 532..718 100 -> Minus
arm_3L 3466950..3467372 109..531 100 -> Minus
arm_3L 3467433..3467524 17..108 100   Minus

BS16802.5prime Sequence

816 bp (816 high quality bases) assembled on 2007-05-15

> BS16802.5prime
GAAGTTATCAGTCGACATGGAGCAGAAAGTGGCTGCCGAGCAGAACATCT
TCGTCGTCGACCGCAAATTGAAGAAAACTTGCCCGCAAGCAGATGTCGAG
CGCCTGGCTAAGACGCACTGGCTCACCGACTATGCCCGGGATATATTTTT
GACCATGAGGGAGCAAGAACTCAGCCGTCGGCCTTTGTTTTACCTTTCGC
CGCAGCTGAACGAGCGCCGAAGAATGCTGCAGTTGCTCAAACTGGCGACC
AGCGCCCACAAGCTTAGTCGCTGTGCTTTGCACCTGGCCGTCTACTATAT
GGATCGCTTTGTTGATTACTACAAAATCCGTCCGGACAAATTGCTCCTGG
TGGCCATCACTTGTCTTCATATAGCTGCGCAGATCGAAAACACGGATGCG
TTTATTCCGCGCTACAGCGAAATGAACCGATTGGTCAAGAACGCCTATAC
GGCATTCGAGTACAAGGCTGTGGAAAGGAAGATCCTGTGCTTCCTGAACT
TCGAGCTAATACGTCCCACCACCGCCAGTTTTGTGGAGCTCTTCGCCTGC
AGTTTTCTCACTCGCTCCGATTTCAAGAACTACATCGAGATGTTGGATGA
GTACGAGCGGAACCATCACACCCAGCCGTACCAGCGATATATAAGCTTCG
AAGAGATGCTGTCCATTTTGGCGCAGTTGCTCCTTCGCATGGCGGATTAT
ACATTGTACAATTTGCCAACGATCTGCCATCCCTTTTGGCTGCCGCCTGC
ATTGCTGCAGTTCGCCAGGTCAGCGGGGTCAGGCGCTGGTCGGAGTACCT
AGAAGCTTTCTAGACC

BS16802.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG10308-PB 786 CycJ-RB 1..786 17..802 3930 100 Plus
CG10308-PA 1161 CycJ-RA 1..694 17..710 3470 100 Plus
CG10308-PA 1161 CycJ-RA 702..793 711..802 460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
CycJ-RB 1471 CG10308-RB 112..897 17..802 3930 100 Plus
CycJ-RA 1478 CG10308-RA 112..904 17..802 3850 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3466949..3467372 287..710 2120 100 Plus
3L 28110227 3L 3466684..3466872 99..287 945 100 Plus
3L 28110227 3L 3467433..3467524 711..802 460 100 Plus
3L 28110227 3L 3466539..3466622 17..100 420 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:09:54 has no hits.

BS16802.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:18:35 Download gff for BS16802.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10308-PB 1..786 17..802 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:51:05 Download gff for BS16802.5prime
Subject Subject Range Query Range Percent Splice Strand
CycJ-RB 112..897 17..802 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:11:27 Download gff for BS16802.5prime
Subject Subject Range Query Range Percent Splice Strand
CycJ-RB 112..897 17..802 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:11:27 Download gff for BS16802.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3466686..3466872 101..287 100 -> Plus
3L 3466539..3466622 17..100 100 -> Plus
3L 3466950..3467372 288..710 100 -> Plus
3L 3467433..3467524 711..802 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:51:05 Download gff for BS16802.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3466539..3466622 17..100 100 -> Plus
arm_3L 3466686..3466872 101..287 100 -> Plus
arm_3L 3466950..3467372 288..710 100 -> Plus
arm_3L 3467433..3467524 711..802 100   Plus

BS16802.complete Sequence

818 bp assembled on 2007-05-07

GenBank Submission: FJ638195

> BS16802.complete
GAAGTTATCAGTCGACATGGAGCAGAAAGTGGCTGCCGAGCAGAACATCT
TCGTCGTCGACCGCAAATTGAAGAAAACTTGCCCGCAAGCAGATGTCGAG
CGCCTGGCTAAGACGCACTGGCTCACCGACTATGCCCGGGATATATTTTT
GACCATGAGGGAGCAAGAACTCAGCCGTCGGCCTTTGTTTTACCTTTCGC
CGCAGCTGAACGAGCGCCGAAGAATGCTGCAGTTGCTCAAACTGGCGACC
AGCGCCCACAAGCTTAGTCGCTGTGCTTTGCACCTGGCCGTCTACTATAT
GGATCGCTTTGTTGATTACTACAAAATCCGTCCGGACAAATTGCTCCTGG
TGGCCATCACTTGTCTTCATATAGCTGCGCAGATCGAAAACACGGATGCG
TTTATTCCGCGCTACAGCGAAATGAACCGATTGGTCAAGAACGCCTATAC
GGCATTCGAGTACAAGGCTGTGGAAAGGAAGATCCTGTGCTTCCTGAACT
TCGAGCTAATACGTCCCACCACCGCCAGTTTTGTGGAGCTCTTCGCCTGC
AGTTTTCTCACTCGCTCCGATTTCAAGAACTACATCGAGATGTTGGATGA
GTACGAGCGGAACCATCACACCCAGCCGTACCAGCGATATATAAGCTTCG
AAGAGATGCTGTCCATTTTGGCGCAGTTGCTCCTTCGCATGGCGGATTAT
ACATTGTACAATTTGCCAACGATCTGCCATCCCTTTTGGCTGCCGCCTGC
ATTGCTGCAGTTCGCCAGGTCAGCGGGGTCAGGCGCTGGTCGGAGTACCT
AGAAGCTTTCTAGACCAT

BS16802.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
CycJ-RB 786 CG10308-PB 1..786 17..802 3930 100 Plus
CycJ-RA 1161 CG10308-PA 1..793 17..802 3825 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
CycJ-RB 1471 CG10308-RB 112..897 17..802 3930 100 Plus
CycJ-RA 1478 CG10308-RA 112..904 17..802 3825 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3466949..3467372 287..710 2120 100 Plus
3L 28110227 3L 3466684..3466872 99..287 945 100 Plus
3L 28110227 3L 3467433..3467524 711..802 460 100 Plus
3L 28110227 3L 3466539..3466622 17..100 420 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:57:54 has no hits.

BS16802.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:01 Download gff for BS16802.complete
Subject Subject Range Query Range Percent Splice Strand
CycJ-RB 1..786 17..802 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:05 Download gff for BS16802.complete
Subject Subject Range Query Range Percent Splice Strand
CycJ-RB 126..911 17..802 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:13 Download gff for BS16802.complete
Subject Subject Range Query Range Percent Splice Strand
CycJ-RB 112..897 17..802 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:01 Download gff for BS16802.complete
Subject Subject Range Query Range Percent Splice Strand
CycJ-RB 126..911 17..802 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:29:37 Download gff for BS16802.complete
Subject Subject Range Query Range Percent Splice Strand
CycJ-RB 112..897 17..802 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:29:37 Download gff for BS16802.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3466539..3466622 17..100 100 -> Plus
3L 3466686..3466872 101..287 100 -> Plus
3L 3466950..3467372 288..710 100 -> Plus
3L 3467433..3467524 711..802 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:13 Download gff for BS16802.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3466539..3466622 17..100 100 -> Plus
arm_3L 3466686..3466872 101..287 100 -> Plus
arm_3L 3466950..3467372 288..710 100 -> Plus
arm_3L 3467433..3467524 711..802 100   Plus

BS16802.pep Sequence

Translation from 16 to 801

> BS16802.pep
MEQKVAAEQNIFVVDRKLKKTCPQADVERLAKTHWLTDYARDIFLTMREQ
ELSRRPLFYLSPQLNERRRMLQLLKLATSAHKLSRCALHLAVYYMDRFVD
YYKIRPDKLLLVAITCLHIAAQIENTDAFIPRYSEMNRLVKNAYTAFEYK
AVERKILCFLNFELIRPTTASFVELFACSFLTRSDFKNYIEMLDEYERNH
HTQPYQRYISFEEMLSILAQLLLRMADYTLYNLPTICHPFWLPPALLQFA
RSAGSGAGRST*

BS16802.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
CycJ-PB 261 CG10308-PB 1..261 1..261 1356 100 Plus
CycJ-PA 386 CG10308-PA 1..231 1..231 1191 100 Plus