Clone Sequence Records
BS16803.complete Sequence
2336 bp assembled on 2009-12-08
GenBank Submission: KX803111
> BS16803.complete
GAAGTTATCAGTCGACATGCCGCATCATCACCATCAGCATCAGCCGACGA
GCAGCCAAAACAATTTGACATTTCTAAAATCGAATTACAAATTCAAGCGC
AGAGCGATGTCGATGGCCATCCGCGCACTTCCTGCGACCACGACGCCAGC
GGAAGCGCGTAGAGCAGAACCAAGCCAAAACACCGACCAATTAGCGGCAA
CAATGTCAAAGACGTCAGCAGCAACAGCAACACAATTGGCAAGAGCAACT
AGCCGCGAATGTAGAACAATTCTAGGTTTATTTATAGTAAGCGCATGGAG
CGCTTTGCAAGAGTTGGCCAATTGCTTACGCCAGGATGAAGATCGCTATG
TTGGCCATGGCCGTGACGTCAATGCGTCGTCCGATGCCTCTGATGAGGTG
TCAATGGCACGTGAGCAACAACAACACCAACGCCAGCACAGCAAACACTC
GGCCAGTTCTAGTCCCGCAAAAAGCATGCGCTGCACGAGAGCAAAAGCAG
CATCAGCATCAACTGGCACCGCAGCAGCAACAGCAACACTGGGCGCAGCA
GCAGCAGAAGGAGCAACTTCTGGCCATCAGTTGGGTGGACAGCCTTTGAT
GGCTCTGTTAATTGGATTGCTGCTACTGAATTTTCGCCTGGCGGCGGCTG
GCACCTGTTGGCAGACGCACCTGGGCAGCGGAAAGTGTGGACAGGTCTTC
TCCACGGACATATCGAGGTCGGAGTGCTGCGGCTCCAGCCAGAGCTTCTC
CTACACAGATCGCGAGCTGAGCAGCGTGGAGTACTTCTTTGCCACGGCCA
TTGGTGGCGGCGTGGAGTGCTCGCCCTGCATGGAGAGCTGCAAGGGCTTC
AAGTGCGGCCCAAACAAGAAGTGCGTGAAACGCAAGGGTCGGCCCAAGTG
CGTTTGTGCACCCGAATGCGGAGCTGCCCTGCGACGCAGGACACATCAGC
AGGAGCTGGAGCTGGAGCAGGAGCCGGAGCTGGAGGAGGAGCAGCAGGAG
ATGAAGCCTCCCCGCGAGTCCCGTAGTCTAAGTAGCGAAAATACCAACTT
CAATTTAGGTTTAGACGGCGGCCAACGCCAACGTGCTGATAACCAAAGAA
AGCTGCAGCCTCGCGAGTCGAAGCATCGCAGACTTTTGATCATAGACAGC
AGCAGCAGGAGCAGCAGCAATTTGCCAGATCAGCCCACAAGTGGCAGACG
CGGCCGGGTGGAGATGACGGGCTATGAGAGGCGCAGACATAGAAACAACC
ATGGCAAACACTTAACAAGATCAATGACGACAGGAGCCAATGACTCGTTC
CCGGCAGACAAGACGCCTGCGCAGTCGCCTGCCGCAGACTCAATCTTAGC
TCAGTCTAGACTTGCCAACTTGGCAAATGCTAATGAACCCGCCAACGACA
TTAATAGACAGTCGTCGACTCGAGTCAGACATCAGCATGCCAGACGCATC
GAGCATGCTCCAAATCCAGACAATGGGCTAAGGAAAAGGCAACATAAGCA
GCAGCAGCAGCATCAGCATCAGCATCAGGATCGAATGAATACAGAAGCCC
AGTCAGCGAATACCACTGTGTCTGGGTCTGGGTCCGGGGCAACGAATCAT
CGTCGAATCTCTCAGTTGCAACACGGAAGTGAAACGGCTGCGTCATCGGA
CCTCGCTAATACCCATGACTTGGCTCATTTGGGCGGAATCTACGCGCCCC
TGCCGCCGCAGCATTCGAATCCGGTTTGCGGCACCGACGGACGCACCTAC
AACACCGAGTGCCAGCTGCGCAAGCGCGCCTGCCGCACCAACAACGCCCA
ACTGGAGGTCGCCTATCGGGGCCACTGCAAGAACAGCTGCAGCGGAGTCC
ATTGCTTGAACGGATTGACCTGCGTGGAGGATCAGTATCTGATGCCCCAC
TGTATCGCCTGCCGGATCGAGTGTCCCTGGGACAACCTGGATGTGGACTC
CAGTGGCTACGACGAGCGACAGGCGGTGTGCGGTGTGGATGGGAAGACGT
ACAGGAGCGCCTGTGATATAAATCGAATGATTTGCAAAATTGGACGTTCC
ATCGCCGTGGCATATCCGGGTCCCTGTCGAGCAGGCCGCGTGAGCTGTGC
GGACATCAAGTGTGGGCCAAAGGATAACTGCCTGGTGGATCTGCAGACGC
GCCAGCCGAGATGCGTGACCTGTCGCTACAAGTGTCCGCGGAAGCAGCAG
CGACCGGTACACAAAATATGCGGCTACAACAACCAGACATACAACTCGTG
GTGTGAGATGCACAAACACTCCTGCGAATCCCGCTACTTCATCGGCGTCA
AGTCCCAGGGTAGCTGCTAGAAGCTTTCTAGACCAT
BS16803.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:24:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fs-RA | 2304 | CG33466-PA | 1..2304 | 17..2320 | 11520 | 100 | Plus |
| Fs-RB | 2301 | CG33466-PB | 1..2301 | 17..2320 | 11440 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:24:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fs-RA | 3561 | CG33466-RA | 675..2979 | 16..2320 | 11525 | 100 | Plus |
| Fs-RB | 3290 | CG33466-RB | 407..2708 | 16..2320 | 11445 | 99.9 | Plus |
| CG8079-RC | 2838 | CG8079-RC | 2363..2491 | 2208..2080 | 645 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:24:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15233918..15234793 | 1708..833 | 4380 | 100 | Minus |
| 2R | 25286936 | 2R | 15235861..15236492 | 647..16 | 3160 | 100 | Minus |
| 2R | 25286936 | 2R | 15232311..15232559 | 2081..1833 | 1245 | 100 | Minus |
| 2R | 25286936 | 2R | 15234858..15235044 | 833..647 | 935 | 100 | Minus |
| 2R | 25286936 | 2R | 15224320..15224448 | 2208..2080 | 645 | 100 | Minus |
| 2R | 25286936 | 2R | 15233690..15233814 | 1832..1708 | 625 | 100 | Minus |
| 2R | 25286936 | 2R | 15224142..15224256 | 2320..2206 | 575 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:24:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2509..2661 | 414..570 | 208 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2625..2847 | 20..256 | 157 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6703..6852 | 112..266 | 141 | 60.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2408 | 145..251 | 140 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1498..1572 | 176..249 | 138 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2432 | 147..269 | 136 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6815 | 163..256 | 136 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6796 | 193..251 | 131 | 72.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 986..1171 | 57..248 | 131 | 57.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2450 | 132..251 | 130 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6839..6945 | 141..254 | 129 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2451..2653 | 23..232 | 123 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1514..1618 | 161..273 | 114 | 60.2 | Plus |
BS16803.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:18 Download gff for
BS16803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fs-RA | 666..2969 | 17..2320 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:18 Download gff for
BS16803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fs-RA | 676..2979 | 17..2320 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:36 Download gff for
BS16803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fs-RA | 666..2969 | 17..2320 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:35 Download gff for
BS16803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fs-RA | 676..2979 | 17..2320 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:35 Download gff for
BS16803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15224142..15224255 | 2207..2320 | 100 | <- | Minus |
| 2R | 15224322..15224446 | 2082..2206 | 100 | <- | Minus |
| 2R | 15232311..15232559 | 1833..2081 | 100 | <- | Minus |
| 2R | 15233690..15233813 | 1709..1832 | 100 | <- | Minus |
| 2R | 15233918..15234792 | 834..1708 | 100 | <- | Minus |
| 2R | 15234858..15235043 | 648..833 | 100 | <- | Minus |
| 2R | 15235861..15236491 | 17..647 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:18 Download gff for
BS16803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11111647..11111760 | 2207..2320 | 100 | <- | Minus |
| arm_2R | 11111827..11111951 | 2082..2206 | 100 | <- | Minus |
| arm_2R | 11119816..11120064 | 1833..2081 | 100 | <- | Minus |
| arm_2R | 11121195..11121318 | 1709..1832 | 100 | <- | Minus |
| arm_2R | 11121423..11122297 | 834..1708 | 100 | <- | Minus |
| arm_2R | 11122363..11122548 | 648..833 | 100 | <- | Minus |
| arm_2R | 11123366..11123996 | 17..647 | 100 | | Minus |
BS16803.3prime Sequence
929 bp (847 high quality bases) assembled on 2007-05-15
> BS16803.3prime
ATGGTCTAGAAAGCTTCTAGCAGCTACCCTGGGACTTGACGCCGATGAAG
TAGCGGGATTCGCAGGAGTGTTTGTGCATCTCACACCACGAGTTGTATGT
CTGGTTGTTGTAGCCGCATATTTTGTGTACCGGTCGCTGCTGCTTCCGCG
GACACTTGTAGCGACAGGTCACGCATCTCGGCTGGCGCGTCTGCAGATCC
ACCAGGCAGTTATCCTTTGGCCCACACTTGATGTCCGCACAGCTCACGCG
GCCTGCTCGACAGGGACCCGGATATGCCACGGCGATGGAACGTCCAATTT
TGCAAATCATTCGATTTATATCACAGGCGCTCCTGTACGTCTTCCCATCC
ACACCGCACACCGCCTGTCGCTCGTCGTAGCCACTGGAGTCCACATCCAG
GTTGTCCCAGGGACACTCGATCCGGCAGGCGATACAGTGGGGCATCAGAT
ACTGATCCTCCACGCAGGTCAATCCGTTCAAGCAATGGACTCCGCTGCAG
CTGTTCTTGCAGTGGCCCCGATAGGCGACCTCCAGTTGGGCGTTGTTGGT
GCGGCAGGCGCGCTTGCGCAGCTGGCACTCGGTGTTGTAGGTGCGTCCGT
CGGTGCCGCAAACCGGATTCGAATGCTGCGGCGGCAGGGGCGCGTAGATT
CCGCCCAAATGAGCCAAGTCATGGGTATTAGCGAGGTCCGATGACGCAGC
CGTTTCACTTCCGTGTTGCAACTGAGAGATTCGACGATGATTCGTTGCCC
CGGACCCAGACCCAGACACAGTGGTATTCGCTGACTGGGCTTCTGTATTC
ATTCGATCCTGATGCTGATGCTGATGCTGCTGCTGCTGCTTATGTTGCCT
TTTCCTTAGCCCATGTCTGGATTTGGAGCATGCTCGATGCGTCTGGCATG
CTGATGTCTGACTCGAGTCGACGACTGTC
BS16803.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:23:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33466-PA | 2304 | Fs-RA | 1457..2304 | 864..17 | 4240 | 100 | Minus |
| CG33466-PA | 2304 | Fs-RA | 1391..1456 | 929..864 | 330 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:12:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fs-RA | 3561 | CG33466-RA | 2066..2979 | 929..17 | 4545 | 99.9 | Minus |
| Fs-RB | 3290 | CG33466-RB | 1798..2708 | 929..17 | 4490 | 99.6 | Minus |
| CG8079-RC | 2838 | CG8079-RC | 2363..2491 | 129..257 | 645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:12:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15233918..15234219 | 629..929 | 1460 | 99.7 | Plus |
| 2R | 25286936 | 2R | 15232311..15232559 | 256..504 | 1245 | 100 | Plus |
| 2R | 25286936 | 2R | 15224320..15224448 | 129..257 | 645 | 100 | Plus |
| 2R | 25286936 | 2R | 15233690..15233814 | 505..629 | 625 | 100 | Plus |
| 2R | 25286936 | 2R | 15224142..15224256 | 17..131 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:12:44 has no hits.
BS16803.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:23:49 Download gff for
BS16803.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33466-PA | 1391..2304 | 17..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:41:12 Download gff for
BS16803.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fs-RA | 2066..2982 | 14..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:32:04 Download gff for
BS16803.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fs-RA | 2066..2982 | 14..929 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:32:04 Download gff for
BS16803.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15233918..15234219 | 629..929 | 99 | | Plus |
| 2R | 15224139..15224255 | 14..130 | 99 | <- | Plus |
| 2R | 15224322..15224446 | 131..255 | 100 | <- | Plus |
| 2R | 15232311..15232559 | 256..504 | 100 | <- | Plus |
| 2R | 15233690..15233813 | 505..628 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:41:12 Download gff for
BS16803.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11111644..11111760 | 14..130 | 99 | <- | Plus |
| arm_2R | 11111827..11111951 | 131..255 | 100 | <- | Plus |
| arm_2R | 11119816..11120064 | 256..504 | 100 | <- | Plus |
| arm_2R | 11121195..11121318 | 505..628 | 100 | <- | Plus |
| arm_2R | 11121423..11121724 | 629..929 | 99 | | Plus |
BS16803.5prime Sequence
838 bp (787 high quality bases) assembled on 2007-05-15
> BS16803.5prime
GAAGTTATCAGTCGACATGCCGCATCATCACCATCAGCATCAGCCGACGA
GCAGCCAAAACAATTTGACATTTCTAAAATCGAATTACAAATTCAAGCGC
AGAGCGATGTCGATGGCCATCCGCGCACTTCCTGCGACCACGACGCCAGC
GGAAGCGCGTAGAGCAGAACCAAGCCAAAACACCGACCAATTAGCGGCAA
CAATGTCAAAGACGTCAGCAGCAACAGCAACACAATTGGCAAGAGCAACT
AGCCGCGAATGTAGAACAATTCTAGGTTTATTTATAGTAAGCGCATGGAG
CGCTTTGCAAGAGTTGGCCAATTGCTTACGCCAGGATGAAGATCGCTATG
TTGGCCATGGCCGTGACGTCAATGCGTCGTCCGATGCCTCTGATGAGGTG
TCAATGGCACGTGAGCAACAACAACACCAACGCCAGCACAGCAAACACTC
GGCCAGTTCTAGTCCCGCAAAAAGCATGCGCTGCACGAGAGCAAAAGCAG
CATCAGCATCAACTGGCACCGCAGCAGCAACAGCAACACTGGGCGCAGCA
GCAGCAGAAGGAGCAACTTCTGGCCATCAGTTGGGTGGACAGCCTTTGAT
GGCTCTGTTAATTGGATTGCTGCTACTGAATTTTCGCCTGGCGGCGGCTG
GCACCTGTTGGCAGACGCACCTGGGCAGCGGAAAGTGTGGACAGGTCTTC
TCCACGGACATATCGAGGTCGGAGTGCTGCGGCTCCAGCCAGAGCTTCTC
CTACACAGATCGCGAGCTGAGCAGCGTGGAGTACTTCTTTGGCACGGCCA
TTGGTGGCGGCGTGGAGTGCTCGCCCTGCATGGAGAGC
BS16803.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:18:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33466-PA | 2304 | Fs-RA | 1..822 | 17..838 | 4085 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:39:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fs-RA | 3561 | CG33466-RA | 675..1497 | 16..838 | 4100 | 99.9 | Plus |
| Fs-RB | 3290 | CG33466-RB | 407..1229 | 16..838 | 4100 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:39:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15235861..15236492 | 647..16 | 3160 | 100 | Minus |
| 2R | 25286936 | 2R | 15234858..15235044 | 833..647 | 920 | 99.5 | Minus |
Blast to na_te.dros performed 2015-02-10 21:39:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2509..2661 | 414..570 | 208 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2625..2847 | 20..256 | 157 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6703..6852 | 112..266 | 141 | 60.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2408 | 145..251 | 140 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1498..1572 | 176..249 | 138 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2432 | 147..269 | 136 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6815 | 163..256 | 136 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6796 | 193..251 | 131 | 72.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 986..1171 | 57..248 | 131 | 57.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2450 | 132..251 | 130 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6839..6945 | 141..254 | 129 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2451..2653 | 23..232 | 123 | 59.2 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 910..1046 | 133..269 | 118 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6852 | 132..232 | 115 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1514..1618 | 161..273 | 114 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2733..2819 | 165..251 | 111 | 63.3 | Plus |
BS16803.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:18:44 Download gff for
BS16803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33466-PA | 1..822 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:15:48 Download gff for
BS16803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fs-RB | 395..1229 | 3..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:21 Download gff for
BS16803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fs-RB | 395..1229 | 3..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:21 Download gff for
BS16803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15234852..15235043 | 648..838 | 97 | <- | Minus |
| 2R | 15235861..15236504 | 3..647 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:15:48 Download gff for
BS16803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11122357..11122548 | 648..838 | 97 | <- | Minus |
| arm_2R | 11123366..11124009 | 3..647 | 99 | | Minus |
BS16803.pep Sequence
Translation from 16 to 2319
> BS16803.pep
MPHHHHQHQPTSSQNNLTFLKSNYKFKRRAMSMAIRALPATTTPAEARRA
EPSQNTDQLAATMSKTSAATATQLARATSRECRTILGLFIVSAWSALQEL
ANCLRQDEDRYVGHGRDVNASSDASDEVSMAREQQQHQRQHSKHSASSSP
AKSMRCTRAKAASASTGTAAATATLGAAAAEGATSGHQLGGQPLMALLIG
LLLLNFRLAAAGTCWQTHLGSGKCGQVFSTDISRSECCGSSQSFSYTDRE
LSSVEYFFATAIGGGVECSPCMESCKGFKCGPNKKCVKRKGRPKCVCAPE
CGAALRRRTHQQELELEQEPELEEEQQEMKPPRESRSLSSENTNFNLGLD
GGQRQRADNQRKLQPRESKHRRLLIIDSSSRSSSNLPDQPTSGRRGRVEM
TGYERRRHRNNHGKHLTRSMTTGANDSFPADKTPAQSPAADSILAQSRLA
NLANANEPANDINRQSSTRVRHQHARRIEHAPNPDNGLRKRQHKQQQQHQ
HQHQDRMNTEAQSANTTVSGSGSGATNHRRISQLQHGSETAASSDLANTH
DLAHLGGIYAPLPPQHSNPVCGTDGRTYNTECQLRKRACRTNNAQLEVAY
RGHCKNSCSGVHCLNGLTCVEDQYLMPHCIACRIECPWDNLDVDSSGYDE
RQAVCGVDGKTYRSACDINRMICKIGRSIAVAYPGPCRAGRVSCADIKCG
PKDNCLVDLQTRQPRCVTCRYKCPRKQQRPVHKICGYNNQTYNSWCEMHK
HSCESRYFIGVKSQGSC*
BS16803.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:02:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fs-PA | 767 | CG33466-PA | 1..767 | 1..767 | 4105 | 100 | Plus |
| Fs-PB | 766 | CG33466-PB | 1..766 | 1..767 | 4088 | 99.9 | Plus |
| CG32354-PA | 662 | CG32354-PA | 230..415 | 568..753 | 159 | 25.1 | Plus |
