Clone Sequence Records
BS16805.complete Sequence
1151 bp assembled on 2009-12-07
GenBank Submission: KX806391
> BS16805.complete
GAAGTTATCAGTCGACATGGCCGACGAGAGCATCACGCGAATGAACCTGG
CGGCCATCAAGAAGATCGACCCGTACGCCAAGGAGATCGTGGATTCGTCC
TCGCACGTCGCCTTCTACACGTTCAACTCGTCGCAGAACGAGTGGGAAAA
GACCGATGTGGAGGGAGCCTTCTTCATATACCACCGCAACGCGGAGCCCT
TTCACAGCATCTTCATCAACAACCGACTGAACACCACGTCCTTCGTGGAG
CCCATCACCGGCAGCCTGGAGCTGCAGTCGCAGCCGCCGTTCCTGCTCTA
CCGCAACGAGCGCTCGCGCATCCGCGGCTTCTGGTTCTACAACAGCGAGG
AGTGCGACCGCATCAGCGGCTTGGTGAACGGGCTGCTCAAGTCCAAGGAT
CAGGGAACGAATGGCCAGGCCCAGCGTCACGTCTCCGCGCCCCAGCAGCC
AAAGCAGGACAGCAGCCAGCCGGCCAGCATATTCAACATGCTGACCAAGG
CCCAGAAGGACTACAATGCCCAGGTGAGCGGCGGGCAGCCGAAGACGCCT
TCGGCGGAGAACGTAACGGCCGGCAATGTGTTGAAGTTCTTCGAATCGGC
CAAGCAGGCCACGGCAGAGTCACTGTTCCACCGCGTCCAGCCGCTCTCCG
TGGACCAGCTGGAGAAACAGCAGCGGGCAGCCACGCCTGGCGAGGATCTG
TTGCCCCCGGCAGGCAGGGACAATCACGAGAGCCGGCTGTCGCCCTTCCA
GAAGATGCAGCAGCTTAACATTCAGCTCCTGAGCGACCTGAAGATCGGTA
AAAGCTACGCTACGGCTCAATCTCCGACAGTCGCCCCGTCCTCGTCGGCG
CTGATGGCCAACGACGATGCCGGCAAGTGCTTGCGGAGACTGCTGGCTGG
CGACAAGCCCGGGCCGGCCCTCATGCCGCCCACCATGTTCGACGCGCCCA
ACAACGGCAATCCGGAGCCACAGCAGCCACAGCAGCCACAGCAGCCACTG
CTGAACTCGACGCAGTTCGTCCAGGCCTTCACGTACCTTATCCAGAACGA
TAAGGAGTTTGCCAACAAGCTGCACAAGGCCTACCTGAACGGCTGTTCCA
ATCTACTGCTGGACTCCAGCTCCACATATCAATAAAAGCTTTCTAGACCA
T
BS16805.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:47:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DCP1-RB | 1119 | CG11183-PB | 1..1119 | 17..1135 | 5595 | 100 | Plus |
| DCP1-RA | 1119 | CG11183-PA | 1..1119 | 17..1135 | 5595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DCP1-RB | 1225 | CG11183-RB | 85..1204 | 17..1136 | 5600 | 100 | Plus |
| DCP1-RA | 1513 | CG11183-RA | 85..1204 | 17..1136 | 5600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23889073..23890192 | 1136..17 | 5600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:47:25 has no hits.
BS16805.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:19 Download gff for
BS16805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dcp1-RA | 74..1190 | 17..1133 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:48 Download gff for
BS16805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dcp1-RA | 85..1201 | 17..1133 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:10 Download gff for
BS16805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dcp1-RA | 74..1190 | 17..1133 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:49 Download gff for
BS16805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DCP1-RA | 85..1201 | 17..1133 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:49 Download gff for
BS16805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23889076..23890192 | 17..1133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:48 Download gff for
BS16805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19776599..19777715 | 17..1133 | 100 | | Minus |
BS16805.3prime Sequence
817 bp (627 high quality bases) assembled on 2007-05-15
> BS16805.3prime
ATGGTCTAGAAAGCTTTTATTGATATGTGGAGCTGGAGTCCAGCAGTAGA
TTGGAACAGCCGTTCAGGTAGGCCTTGTGCAGCTTGTTGGCAAACTCCTT
ATCGTTCTGGATAAGGTACGTGAAGGCCTGGACGAACTGCGTCGAGTTCA
GCAGTGGCTGCTGTGGCTGCTGTGGCTGCTGTGGCTCCGGATTGCCGTTG
TTGGGCGCGTCGAACATGGTGGGCGGCATGAGGGCCGGCCCGGGCTTGTC
GCCAGCCAGCAGTCTCCGCAAGCACTTGCCGGCATCGTCGTTGGCCATCA
GCGCCGACGAGGACGGGGCGACTGTCGGAGATTGAGCCGTAGCGTAGCTT
TTACCGATCTTCAGGTCGCTCAGGAGCTGAATGTTAAGCTGCTGCATCTT
CTGGAAGGGCGACAGCCGGCTCTCGTGATTGTCCCTGCCTGCCGGGGGCA
ACAGATCCTCGCCAGGCGTGGCTGCCCGCTGCTGTTTCTCCAGCTGGTCC
ACGGAGAGCGGCTGGACGCGGTGGAACAGTGACTCTGCCGTGGCCTGCTT
GGCCGATTCGAAGAACTTCAACACATTGCCGGCCGTTACGTTCTCCGCCG
AAGGCGTCTTCGGCTGCCCGCCGCTCACCTGGGCATTGTAGTCCTTCTGG
GCCTTGGTCAGCATGTTGAATATGCTGGCCGGCTGGCTGCTGTCCTGCTT
TGGCTGCTGGGGCGCGGAGACGTGACGCTGGGCCTGGCCATTCGTTCCCT
GATCCTTGGACTTGAACAGCCCCGTTCACAAGCCGCTGATGCGGTCGCAC
TCCTCGCTGTTGTAGAA
BS16805.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:26:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11183-PA | 1119 | CG11183-RA | 364..1119 | 772..17 | 3755 | 99.8 | Minus |
| CG11183-PA | 1119 | CG11183-RA | 319..357 | 817..779 | 195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:39:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DCP1-RB | 1225 | CG11183-RB | 403..1204 | 817..16 | 3950 | 99.6 | Minus |
| DCP1-RA | 1513 | CG11183-RA | 403..1204 | 817..16 | 3950 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:39:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23889073..23889874 | 16..817 | 3920 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:39:53 has no hits.
BS16805.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:26:52 Download gff for
BS16805.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11183-PA | 321..1119 | 17..815 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:16:37 Download gff for
BS16805.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dcp1-RA | 403..1204 | 16..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:58 Download gff for
BS16805.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DCP1-RA | 403..1204 | 16..817 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:58 Download gff for
BS16805.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23889073..23889874 | 16..817 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:16:37 Download gff for
BS16805.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19776596..19777397 | 16..817 | 99 | | Plus |
BS16805.5prime Sequence
787 bp (786 high quality bases) assembled on 2007-05-15
> BS16805.5prime
GAAGTTATCAGTCGACATGGCCGACGAGAGCATCACGCGAATGAACCTGG
CGGCCATCAAGAAGATCGACCCGTACGCCAAGGAGATCGTGGATTCGTCC
TCGCACGTCGCCTTCTACACGTTCAACTCGTCGCAGAACGAGTGGGAAAA
GACCGATGTGGAGGGAGCCTTCTTCATATACCACCGCAACGCGGAGCCCT
TTCACAGCATCTTCATCAACAACCGACTGAACACCACGTCCTTCGTGGAG
CCCATCACCGGCAGCCTGGAGCTGCAGTCGCAGCCGCCGTTCCTGCTCTA
CCGCAACGAGCGCTCGCGCATCCGCGGCTTCTGGTTCTACAACAGCGAGG
AGTGCGACCGCATCAGCGGCTTGGTGAACGGGCTGCTCAAGTCCAAGGAT
CAGGGAACGAATGGCCAGGCCCAGCGTCACGTCTCCGCGCCCCAGCAGCC
AAAGCAGGACAGCAGCCAGCCGGCCAGCATATTCAACATGCTGACCAAGG
CCCAGAAGGACTACAATGCCCAGGTGAGCGGCGGGCAGCCGAAGACGCCT
TCGGCGGAGAACGTAACGGCCGGCAATGTGTTGAAGTTCTTCGAATCGGC
CAAGCAGGCCACGGCAGAGTCACTGTTCCACCGCGTCCAGCCGCTCTCCG
TGGACCAGCTGGAGAAACAGCAGCGGGCAGCCACGCCTGGCGAGGATCTG
TTGCCCCCGGCAGGCAGGGACAATCACGAGAGCCGGCTGTCGCCCTTCCA
GAAGATGCAGCAGCTTAACATTCAGCTCCTGAGCGAC
BS16805.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:20:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11183-PA | 1119 | CG11183-RA | 1..771 | 17..787 | 3855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:42:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DCP1-RB | 1225 | CG11183-RB | 85..855 | 17..787 | 3855 | 100 | Plus |
| DCP1-RA | 1513 | CG11183-RA | 85..855 | 17..787 | 3855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:41:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23889422..23890192 | 787..17 | 3855 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:42:02 has no hits.
BS16805.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:20:58 Download gff for
BS16805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11183-PA | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:26:02 Download gff for
BS16805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dcp1-RA | 76..855 | 9..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:28:43 Download gff for
BS16805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DCP1-RA | 76..855 | 9..787 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:28:43 Download gff for
BS16805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23889422..23890201 | 9..787 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:26:02 Download gff for
BS16805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19776945..19777724 | 9..787 | 99 | | Minus |
BS16805.pep Sequence
Translation from 16 to 1134
> BS16805.pep
MADESITRMNLAAIKKIDPYAKEIVDSSSHVAFYTFNSSQNEWEKTDVEG
AFFIYHRNAEPFHSIFINNRLNTTSFVEPITGSLELQSQPPFLLYRNERS
RIRGFWFYNSEECDRISGLVNGLLKSKDQGTNGQAQRHVSAPQQPKQDSS
QPASIFNMLTKAQKDYNAQVSGGQPKTPSAENVTAGNVLKFFESAKQATA
ESLFHRVQPLSVDQLEKQQRAATPGEDLLPPAGRDNHESRLSPFQKMQQL
NIQLLSDLKIGKSYATAQSPTVAPSSSALMANDDAGKCLRRLLAGDKPGP
ALMPPTMFDAPNNGNPEPQQPQQPQQPLLNSTQFVQAFTYLIQNDKEFAN
KLHKAYLNGCSNLLLDSSSTYQ*
BS16805.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:23:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DCP1-PB | 372 | CG11183-PB | 1..372 | 1..372 | 1931 | 100 | Plus |
| DCP1-PA | 372 | CG11183-PA | 1..372 | 1..372 | 1931 | 100 | Plus |
