Clone Sequence Records
BS16810.3prime Sequence
820 bp (660 high quality bases) assembled on 2007-05-15
> BS16810.3prime
ATGGTCTAGAAAGCTTTCAGTTGTTGGCGGGTCGCGTGGGCAGCGGTGGA
GCATTGCCGCTCCTATTTGGTATGGGTGGTGGGCCCCTGCGATTCGGCAG
CGGTGGCGGCGGGCCCATTGGTGCTCCTATCACTGGCGGCGGTCCAGCCG
GCGGCGGATGGCGTGGCGCAGGCACATCCTCCTGAATCTCCTCGTAAATA
TTACTGGCGGTTTCGTAGGCGGTATCAGATGGAATCGGATCCTTGGGCGA
ACCGACTTGGCGCGTGGGCGTCGAGACGGGTGTGGCCTGCTTGCTCTGCA
TTTGGCGCGGCGGCGTCGGCGGACCGGAGAGCACAGCTGGAGCTGTGGGC
GAAGTCTTTCCCGAAGAGGACGTCGAAGAACTAGCGGATACAAGTTCCGT
TGGCGATTGCGATTTGGAGGATGGCGTGGTGTCCATTGCCGGCGGACGAG
GCGGCGCCACCTGCGGCTGAAGCGGCGACGGAATTAGAGGTTGAGATTGC
GGTTGCGGTGGCATCGGTGGCTTTGCCGGCTTGGGCACAATGCTGATGAC
CCCGACGTGGGGCAGGTGGCGTGGTGAGTTCTTTGGCGACATAGGCATTG
GGGGACGGGCTGGGGGACGTGTGGGCGGCTGCTTGGGCCGCTGGGGCAAC
TCCGGCGTAATGGCCTGCAGGAGTTGTGCATGCTCTACAGGATTAGCGCA
CAGCGGTATGGTGTTCGTGGTGCATAGCTCTATCTCGCTGTCCACCAGAT
GCTGCCAGTCCTTTGACTTCAGCTCCAGGATAAAATCTAATCCGCATACT
TGGATACTCTTCTTAAAAGA
BS16810.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:26:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6562-PB | 3657 | synj-RB | 2859..3657 | 815..17 | 3970 | 99.8 | Minus |
CG6562-PA | 3657 | synj-RA | 2859..3657 | 815..17 | 3970 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:18:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Synj-RC | 4638 | CG6562-RC | 3038..3841 | 820..17 | 3990 | 99.8 | Minus |
Synj-RA | 4655 | CG6562-RA | 3055..3858 | 820..17 | 3990 | 99.8 | Minus |
Synj-RB | 4243 | CG6562-RB | 2989..3792 | 820..17 | 3990 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:18:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22084100..22084903 | 820..17 | 3990 | 99.8 | Minus |
Blast to na_te.dros performed 2015-02-13 13:18:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dnet\R1B | 2038 | Dnet\R1B NETR1B 2038bp | 263..320 | 624..681 | 110 | 65.5 | Plus |
BS16810.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:26:47 Download gff for
BS16810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6562-PA | 2855..3657 | 17..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:40:57 Download gff for
BS16810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
synj-RB | 2990..3795 | 12..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:39:58 Download gff for
BS16810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Synj-RB | 2990..3795 | 12..819 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:39:58 Download gff for
BS16810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22084101..22084906 | 12..819 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:40:57 Download gff for
BS16810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17971606..17972411 | 12..819 | 99 | | Minus |
BS16810.5prime Sequence
844 bp (813 high quality bases) assembled on 2007-05-15
> BS16810.5prime
GAAGTTATCAGTCGACATGGCCATGTCCAAGGTGATCCGTGTGCTGGAGA
AGTCCATTGCCCCCTCGCCGCACAGCGTATTACTGGAGCATCGGAACAAG
AGCGACAGCATCCTGTTCGAGTCCCATGCGGTGGCCCTGCTGACCCAGCA
GGAGACGGATGTCATCCGGAAGCAGTACACCAAGGTCTGCGACGCCTACG
GATGTCTGGGTGCCCTCCAACTAAACGCCGGCGAGAGCACCGTGCTGTTC
CTGGTGCTGGTCACCGGCTGTGTGTCCATGGGCAAGATCGGCGACATCGA
GATCTTCCGGATCACACAAACCACTTTTGTCTCGCTACAAAATGCAGCGC
CCAACGAAGACAAGATCAGCGAGGTGCGCAAGCTGCTCAACTCGGGCACC
TTCTACTTTGCCCACACCAATGCCAGTGCATCGGCATCCGGAGCGTCATC
GTATCGGTTCGATATTACGCTTTGCGCCCAGCGACGCCAGCAAACGCAGG
AGACGGACAACCGTTTCTTCTGGAATCGCATGATGCACATCCACCTGATG
CGCTTCGGTATCGATTGCCAGTCCTGGTTGTTGCAAGCCATGTGCGGCTC
CGTAGAAGTGCGCACCGTCTACATCGGTGCCAAACAGGCCCGTGCCGCCA
TCATTTCCCGACTGAGCTGCGAACGGGCTGGCACGCGTTTCAATGTCCGT
GGTACCAACGATGAGGGCTATGTGGCTAACTTTGTGGAAACCGAGCAAGT
GATCTACGTGGACGGCGATGTTACTAGTTATGTGCAGACGCGAGGATCGG
TGCCACTCTTCTGGGGACAGCCAGGCGTCCAGGTTGGCTCGCAC
BS16810.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:20:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6562-PB | 3657 | synj-RB | 1..828 | 17..844 | 4115 | 99.8 | Plus |
CG6562-PA | 3657 | synj-RA | 1..828 | 17..844 | 4115 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:35:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Synj-RC | 4638 | CG6562-RC | 185..1012 | 17..844 | 4125 | 99.9 | Plus |
Synj-RA | 4655 | CG6562-RA | 202..1029 | 17..844 | 4125 | 99.9 | Plus |
Synj-RB | 4243 | CG6562-RB | 136..963 | 17..844 | 4125 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:35:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22081180..22082007 | 17..844 | 4125 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:35:06 has no hits.
BS16810.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:20:54 Download gff for
BS16810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6562-PA | 1..828 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:18:27 Download gff for
BS16810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
synj-RB | 129..963 | 9..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:09:17 Download gff for
BS16810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Synj-RB | 129..963 | 9..844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:09:17 Download gff for
BS16810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22081173..22082007 | 9..844 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:18:27 Download gff for
BS16810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17968678..17969512 | 9..844 | 99 | | Plus |
BS16810.complete Sequence
3689 bp assembled on 2010-05-13
GenBank Submission: KX803744
> BS16810.complete
GAAGTTATCAGTCGACATGGCCATGTCCAAGGTGATCCGTGTGCTGGAGA
AGTCCATTGCCCCCTCGCCGCACAGCGTATTACTGGAGCATCGGAACAAG
AGCGACAGCATCCTGTTCGAGTCCCATGCGGTGGCCCTGCTGACCCAGCA
GGAGACGGATGTCATCCGGAAGCAGTACACCAAGGTCTGCGACGCCTACG
GATGTCTGGGTGCCCTCCAACTAAACGCCGGCGAGAGCACCGTGCTGTTC
CTGGTGCTGGTCACCGGCTGTGTGTCCATGGGCAAGATCGGCGACATCGA
GATCTTCCGGATCACACAAACCACTTTTGTCTCGCTACAAAATGCAGCGC
CCAACGAAGACAAGATCAGCGAGGTGCGCAAGCTGCTCAACTCGGGCACC
TTCTACTTTGCCCACACCAATGCCAGTGCATCGGCATCCGGAGCGTCATC
GTATCGGTTCGATATTACGCTTTGCGCCCAGCGACGCCAGCAAACGCAGG
AGACGGACAACCGTTTCTTCTGGAATCGCATGATGCACATCCACCTGATG
CGCTTCGGTATCGATTGCCAGTCCTGGTTGTTGCAAGCCATGTGCGGCTC
CGTAGAAGTGCGCACCGTCTACATCGGTGCCAAACAGGCCCGTGCCGCCA
TCATTTCCCGACTGAGCTGCGAACGGGCTGGCACGCGTTTCAATGTCCGT
GGTACCAACGATGAGGGCTATGTGGCTAACTTTGTGGAAACCGAGCAAGT
GATCTACGTGGACGGCGATGTTACTAGTTATGTGCAGACGCGAGGATCGG
TGCCACTCTTCTGGGAACAGCCAGGCGTCCAGGTTGGCTCGCACAAGGTG
AAGCTATCACGAGGATTCGAGACATCGGCCGCCGCCTTTGATCGACACAT
GAGCATGATGAGGCAACGTTACGGCTATCAGACGGTGGTGAATCTGCTAG
GCAGCTCCCTTGTTGGCAGCAAGGAGGGCGAGGCCATGCTGAGTAATGAG
TTCCAGCGTCATCACGGCATGTCAGCCCACAAGGATGTGCCGCATGTGGT
GTTTGACTATCATCAGGAGTGTCGCGGCGGCAATTTCTCGGCGCTGGCCA
AGCTCAAGGAACGGATCGTAGCCTGCGGTGCTAACTACGGCGTCTTCCAC
GCGTCCAATGGTCAGGTGTTGCGCGAGCAGTTCGGTGTTGTGCGCACGAA
TTGCCTAGACTGTTTGGACAGGACAAACTGTGTGCAGACGTATCTCGGGC
TTGACACGCTCGGTATCCAGCTAGAGGCTTTGAAAATGGGCGGCAAGCAG
CAGAATATTTCGCGGTTTGAGGAGATCTTCCGACAGATGTGGATCAACAA
CGGAAATGAGGTCAGCAAGATCTACGCCGGCACCGGGGCCATCCAGGGGG
GATCAAAACTAATGGATGGTGCGCGATCTGCAGCAAGAACAATTCAAAAT
AACCTACTGGACAACTCAAAGCAGGAAGCCATTGATGTCCTGCTAGTGGG
CTCCACGCTTAGCTCGGAGCTTGCGGATCGGGCTCGCATCCTACTGCCCT
CCAATATGTTGCATGCACCTACCACTGTGTTGAGAGAGCTATGCAAGCGC
TACACTGAATATGTGCGTCCTCGAATGGCACGTGTAGCCGTGGGTACCTA
TAACGTCAACGGCGGCAAGCACTTCCGCAGCATTGTGTTCAAGGATTCGC
TGGCCGATTGGCTGCTCGACTGCCATGCCCTTGCCCGCTCCAAGGCGCTT
GTAGATGTGAACAATCCGTCGGAGAACGTCGATCATCCGGTGGATATCTA
CGCCATTGGATTCGAGGAGATTGTGGATCTGAATGCTTCCAACATAATGG
CGGCCAGCACCGACAATGCCAAGTTGTGGGCCGAGGAGCTGCAGAAAACG
ATCTCGCGGGACAATGACTACGTGCTGCTCACATACCAGCAACTGGTGGG
CGTGTGCCTATACATCTACATCCGACCGGAGCACGCGCCGCACATCCGGG
ACGTGGCCATCGACTGTGTTAAGACAGGATTGGGTGGTGCCACTGGGAAT
AAGGGTGCCTGTGCCATTCGATTTGTGCTTCATGGTACTTCCATGTGCTT
CGTGTGTGCCCACTTTGCAGCCGGACAGTCACAGGTGGCTGAAAGGAACG
CTGACTACGCGGAAATCACCCGGAAGCTGGCCTTCCCGATGGGCAGGACG
CTAAAATCACACGACTGGGTGTTTTGGTGCGGCGACTTCAACTATCGCAT
CGACATGGAGAAGGACGAATTAAAGGAGTGCGTACGTAATGGAGATCTCT
CAACCGTCCTCGAGTTCGATCAATTGCGCAAGGAGCAGGAGGCTGGCAAT
GTGTTTGGCGAATTCCTCGAGGGAGAGATCACTTTCGACCCGACGTACAA
GTATGATTTGTTCAGCGACGACTACGACACCTCGGAGAAACAGCGAGCGC
CCGCCTGGACAGATCGGGTTCTCTGGCGTCGCAGGAAGGCGCTGGCCGAG
GGCGACTTTGCTGCCTCAGCCTGGAATCCCGGCAAATTGATTCACTACGG
TCGTTCGGAGCTAAAGCAGAGTGATCATAGACCCGTGATCGCTATTATTG
ATGCTGAGATAATGGAGATCGATCAGCAGCGGAGACGTGCTGTATTCGAG
CAGGTTATCCGAGATCTGGGTCCGCCGGACTCCACGATTGTGGTACATGT
CCTGGAGTCTTCAGCAACTGGAGATGAGGATGGACCAACCATATACGACG
AGAATGTGATGTCAGCCCTGATTACCGAGCTATCCAAGATGGGAGAGGTC
ACTTTGGTGCGCTATGTGGAGGACACCATGTGGGTCACATTTCGGGATGG
AGAATCGGCTTTAAATGCGTCTTCTAAGAAGAGTATCCAAGTATGCGGAT
TAGATCTTATCCTGGAGCTGAAGTCAAAGGACTGGCAGCATCTGGTGGAC
AGCGAGATAGAGCTATGCACCACGAACACCATACCGCTGTGCGCTAATCC
TGTAGAGCATGCACAACTCCTGCAGGCCATTACGCCGGAGTTGCCCCAGC
GGCCCAAGCAGCCGCCCACACGTCCCCCAGCCCGTCCCCCAATGCCTATG
TCGCCAAAGAACTCACCACGCCACCTGCCCCACGTCGGGGTCATCAGCAT
TGTGCCCAAGCCGGCAAAGCCACCGATGCCACCGCAACCGCAATCTCAAC
CTCTAATTCCGTCGCCGCTTCAGCCGCAGGTGGCGCCGCCTCGTCCGCCG
GCAATGGACACCACGCCATCCTCCAAATCGCAATCGCCAACGGAACTTGT
ATCCGCTAGTTCTTCGACGTCCTCTTCGGGAAAGACTTCGCCCACAGCTC
CAGCTGTGCTCTCCGGTCCGCCGACGCCGCCGCGCCAAATGCAGAGCAAG
CAGGCCACACCCGTCTCGACGCCCACGCGCCAAGTCGGTTCGCCCAAGGA
TCCGATTCCATCTGATACCGCCTACGAAACCGCCAGTAATATTTACGAGG
AGATTCAGGAGGATGTGCCTGCGCCACGCCATCCGCCGCCGGCTGGACCG
CCGCCAGTGATAGGAGCACCAATGGGCCCGCCGCCACCGCTGCCGAATCG
CAGGGGCCCACCACCCATACCAAATAGGAGCGGCAATGCTCCACCGCTGC
CCACGCGACCCGCCAACAACTGAAAGCTTTCTAGACCAT
BS16810.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:30:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Synj-RC | 3657 | CG6562-PC | 1..3657 | 17..3673 | 18285 | 100 | Plus |
Synj-RA | 3657 | CG6562-PA | 1..3657 | 17..3673 | 18285 | 100 | Plus |
Synj-RB | 3657 | CG6562-PB | 1..3657 | 17..3673 | 18285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:30:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Synj-RC | 4638 | CG6562-RC | 185..3841 | 17..3673 | 18285 | 100 | Plus |
Synj-RA | 4655 | CG6562-RA | 202..3858 | 17..3673 | 18285 | 100 | Plus |
Synj-RB | 4243 | CG6562-RB | 136..3792 | 17..3673 | 18285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:30:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22082703..22084903 | 1473..3673 | 11005 | 100 | Plus |
2R | 25286936 | 2R | 22081180..22082638 | 17..1475 | 7295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:30:23 has no hits.
BS16810.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 17:10:47 Download gff for
BS16810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
synj-RA | 202..3857 | 17..3672 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:16:45 Download gff for
BS16810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
synj-RB | 136..3791 | 17..3672 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:05 Download gff for
BS16810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Synj-RB | 136..3791 | 17..3672 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:05 Download gff for
BS16810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22082705..22084902 | 1475..3672 | 100 | | Plus |
2R | 22081180..22082637 | 17..1474 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:16:45 Download gff for
BS16810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17968685..17970142 | 17..1474 | 100 | -> | Plus |
arm_2R | 17970210..17972407 | 1475..3672 | 100 | | Plus |
BS16810.pep Sequence
Translation from 16 to 3672
> BS16810.pep
MAMSKVIRVLEKSIAPSPHSVLLEHRNKSDSILFESHAVALLTQQETDVI
RKQYTKVCDAYGCLGALQLNAGESTVLFLVLVTGCVSMGKIGDIEIFRIT
QTTFVSLQNAAPNEDKISEVRKLLNSGTFYFAHTNASASASGASSYRFDI
TLCAQRRQQTQETDNRFFWNRMMHIHLMRFGIDCQSWLLQAMCGSVEVRT
VYIGAKQARAAIISRLSCERAGTRFNVRGTNDEGYVANFVETEQVIYVDG
DVTSYVQTRGSVPLFWEQPGVQVGSHKVKLSRGFETSAAAFDRHMSMMRQ
RYGYQTVVNLLGSSLVGSKEGEAMLSNEFQRHHGMSAHKDVPHVVFDYHQ
ECRGGNFSALAKLKERIVACGANYGVFHASNGQVLREQFGVVRTNCLDCL
DRTNCVQTYLGLDTLGIQLEALKMGGKQQNISRFEEIFRQMWINNGNEVS
KIYAGTGAIQGGSKLMDGARSAARTIQNNLLDNSKQEAIDVLLVGSTLSS
ELADRARILLPSNMLHAPTTVLRELCKRYTEYVRPRMARVAVGTYNVNGG
KHFRSIVFKDSLADWLLDCHALARSKALVDVNNPSENVDHPVDIYAIGFE
EIVDLNASNIMAASTDNAKLWAEELQKTISRDNDYVLLTYQQLVGVCLYI
YIRPEHAPHIRDVAIDCVKTGLGGATGNKGACAIRFVLHGTSMCFVCAHF
AAGQSQVAERNADYAEITRKLAFPMGRTLKSHDWVFWCGDFNYRIDMEKD
ELKECVRNGDLSTVLEFDQLRKEQEAGNVFGEFLEGEITFDPTYKYDLFS
DDYDTSEKQRAPAWTDRVLWRRRKALAEGDFAASAWNPGKLIHYGRSELK
QSDHRPVIAIIDAEIMEIDQQRRRAVFEQVIRDLGPPDSTIVVHVLESSA
TGDEDGPTIYDENVMSALITELSKMGEVTLVRYVEDTMWVTFRDGESALN
ASSKKSIQVCGLDLILELKSKDWQHLVDSEIELCTTNTIPLCANPVEHAQ
LLQAITPELPQRPKQPPTRPPARPPMPMSPKNSPRHLPHVGVISIVPKPA
KPPMPPQPQSQPLIPSPLQPQVAPPRPPAMDTTPSSKSQSPTELVSASSS
TSSSGKTSPTAPAVLSGPPTPPRQMQSKQATPVSTPTRQVGSPKDPIPSD
TAYETASNIYEEIQEDVPAPRHPPPAGPPPVIGAPMGPPPPLPNRRGPPP
IPNRSGNAPPLPTRPANN*
BS16810.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:33:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Synj-PC | 1218 | CG6562-PC | 1..1218 | 1..1218 | 6383 | 100 | Plus |
Synj-PA | 1218 | CG6562-PA | 1..1218 | 1..1218 | 6383 | 100 | Plus |
Synj-PB | 1218 | CG6562-PB | 1..1218 | 1..1218 | 6383 | 100 | Plus |
Ocrl-PB | 850 | CG3573-PB | 168..497 | 521..882 | 487 | 33.4 | Plus |
Ocrl-PA | 850 | CG3573-PA | 168..497 | 521..882 | 487 | 33.4 | Plus |