Clone BS16810 Report

Search the DGRC for BS16810

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:168
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptSynj-RA
Protein status:BS16810.pep: gold
Sequenced Size:3689

Clone Sequence Records

BS16810.3prime Sequence

820 bp (660 high quality bases) assembled on 2007-05-15

> BS16810.3prime
ATGGTCTAGAAAGCTTTCAGTTGTTGGCGGGTCGCGTGGGCAGCGGTGGA
GCATTGCCGCTCCTATTTGGTATGGGTGGTGGGCCCCTGCGATTCGGCAG
CGGTGGCGGCGGGCCCATTGGTGCTCCTATCACTGGCGGCGGTCCAGCCG
GCGGCGGATGGCGTGGCGCAGGCACATCCTCCTGAATCTCCTCGTAAATA
TTACTGGCGGTTTCGTAGGCGGTATCAGATGGAATCGGATCCTTGGGCGA
ACCGACTTGGCGCGTGGGCGTCGAGACGGGTGTGGCCTGCTTGCTCTGCA
TTTGGCGCGGCGGCGTCGGCGGACCGGAGAGCACAGCTGGAGCTGTGGGC
GAAGTCTTTCCCGAAGAGGACGTCGAAGAACTAGCGGATACAAGTTCCGT
TGGCGATTGCGATTTGGAGGATGGCGTGGTGTCCATTGCCGGCGGACGAG
GCGGCGCCACCTGCGGCTGAAGCGGCGACGGAATTAGAGGTTGAGATTGC
GGTTGCGGTGGCATCGGTGGCTTTGCCGGCTTGGGCACAATGCTGATGAC
CCCGACGTGGGGCAGGTGGCGTGGTGAGTTCTTTGGCGACATAGGCATTG
GGGGACGGGCTGGGGGACGTGTGGGCGGCTGCTTGGGCCGCTGGGGCAAC
TCCGGCGTAATGGCCTGCAGGAGTTGTGCATGCTCTACAGGATTAGCGCA
CAGCGGTATGGTGTTCGTGGTGCATAGCTCTATCTCGCTGTCCACCAGAT
GCTGCCAGTCCTTTGACTTCAGCTCCAGGATAAAATCTAATCCGCATACT
TGGATACTCTTCTTAAAAGA

BS16810.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG6562-PB 3657 synj-RB 2859..3657 815..17 3970 99.8 Minus
CG6562-PA 3657 synj-RA 2859..3657 815..17 3970 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
Synj-RC 4638 CG6562-RC 3038..3841 820..17 3990 99.8 Minus
Synj-RA 4655 CG6562-RA 3055..3858 820..17 3990 99.8 Minus
Synj-RB 4243 CG6562-RB 2989..3792 820..17 3990 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22084100..22084903 820..17 3990 99.8 Minus
Blast to na_te.dros performed 2015-02-13 13:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dnet\R1B 2038 Dnet\R1B NETR1B 2038bp 263..320 624..681 110 65.5 Plus

BS16810.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:26:47 Download gff for BS16810.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6562-PA 2855..3657 17..819 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:40:57 Download gff for BS16810.3prime
Subject Subject Range Query Range Percent Splice Strand
synj-RB 2990..3795 12..819 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:39:58 Download gff for BS16810.3prime
Subject Subject Range Query Range Percent Splice Strand
Synj-RB 2990..3795 12..819 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:39:58 Download gff for BS16810.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22084101..22084906 12..819 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:40:57 Download gff for BS16810.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17971606..17972411 12..819 99   Minus

BS16810.5prime Sequence

844 bp (813 high quality bases) assembled on 2007-05-15

> BS16810.5prime
GAAGTTATCAGTCGACATGGCCATGTCCAAGGTGATCCGTGTGCTGGAGA
AGTCCATTGCCCCCTCGCCGCACAGCGTATTACTGGAGCATCGGAACAAG
AGCGACAGCATCCTGTTCGAGTCCCATGCGGTGGCCCTGCTGACCCAGCA
GGAGACGGATGTCATCCGGAAGCAGTACACCAAGGTCTGCGACGCCTACG
GATGTCTGGGTGCCCTCCAACTAAACGCCGGCGAGAGCACCGTGCTGTTC
CTGGTGCTGGTCACCGGCTGTGTGTCCATGGGCAAGATCGGCGACATCGA
GATCTTCCGGATCACACAAACCACTTTTGTCTCGCTACAAAATGCAGCGC
CCAACGAAGACAAGATCAGCGAGGTGCGCAAGCTGCTCAACTCGGGCACC
TTCTACTTTGCCCACACCAATGCCAGTGCATCGGCATCCGGAGCGTCATC
GTATCGGTTCGATATTACGCTTTGCGCCCAGCGACGCCAGCAAACGCAGG
AGACGGACAACCGTTTCTTCTGGAATCGCATGATGCACATCCACCTGATG
CGCTTCGGTATCGATTGCCAGTCCTGGTTGTTGCAAGCCATGTGCGGCTC
CGTAGAAGTGCGCACCGTCTACATCGGTGCCAAACAGGCCCGTGCCGCCA
TCATTTCCCGACTGAGCTGCGAACGGGCTGGCACGCGTTTCAATGTCCGT
GGTACCAACGATGAGGGCTATGTGGCTAACTTTGTGGAAACCGAGCAAGT
GATCTACGTGGACGGCGATGTTACTAGTTATGTGCAGACGCGAGGATCGG
TGCCACTCTTCTGGGGACAGCCAGGCGTCCAGGTTGGCTCGCAC

BS16810.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:20:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG6562-PB 3657 synj-RB 1..828 17..844 4115 99.8 Plus
CG6562-PA 3657 synj-RA 1..828 17..844 4115 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
Synj-RC 4638 CG6562-RC 185..1012 17..844 4125 99.9 Plus
Synj-RA 4655 CG6562-RA 202..1029 17..844 4125 99.9 Plus
Synj-RB 4243 CG6562-RB 136..963 17..844 4125 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22081180..22082007 17..844 4125 99.9 Plus
Blast to na_te.dros performed on 2015-02-13 06:35:06 has no hits.

BS16810.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:20:54 Download gff for BS16810.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6562-PA 1..828 17..844 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:18:27 Download gff for BS16810.5prime
Subject Subject Range Query Range Percent Splice Strand
synj-RB 129..963 9..844 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:09:17 Download gff for BS16810.5prime
Subject Subject Range Query Range Percent Splice Strand
Synj-RB 129..963 9..844 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:09:17 Download gff for BS16810.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22081173..22082007 9..844 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:18:27 Download gff for BS16810.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17968678..17969512 9..844 99   Plus

BS16810.complete Sequence

3689 bp assembled on 2010-05-13

GenBank Submission: KX803744

> BS16810.complete
GAAGTTATCAGTCGACATGGCCATGTCCAAGGTGATCCGTGTGCTGGAGA
AGTCCATTGCCCCCTCGCCGCACAGCGTATTACTGGAGCATCGGAACAAG
AGCGACAGCATCCTGTTCGAGTCCCATGCGGTGGCCCTGCTGACCCAGCA
GGAGACGGATGTCATCCGGAAGCAGTACACCAAGGTCTGCGACGCCTACG
GATGTCTGGGTGCCCTCCAACTAAACGCCGGCGAGAGCACCGTGCTGTTC
CTGGTGCTGGTCACCGGCTGTGTGTCCATGGGCAAGATCGGCGACATCGA
GATCTTCCGGATCACACAAACCACTTTTGTCTCGCTACAAAATGCAGCGC
CCAACGAAGACAAGATCAGCGAGGTGCGCAAGCTGCTCAACTCGGGCACC
TTCTACTTTGCCCACACCAATGCCAGTGCATCGGCATCCGGAGCGTCATC
GTATCGGTTCGATATTACGCTTTGCGCCCAGCGACGCCAGCAAACGCAGG
AGACGGACAACCGTTTCTTCTGGAATCGCATGATGCACATCCACCTGATG
CGCTTCGGTATCGATTGCCAGTCCTGGTTGTTGCAAGCCATGTGCGGCTC
CGTAGAAGTGCGCACCGTCTACATCGGTGCCAAACAGGCCCGTGCCGCCA
TCATTTCCCGACTGAGCTGCGAACGGGCTGGCACGCGTTTCAATGTCCGT
GGTACCAACGATGAGGGCTATGTGGCTAACTTTGTGGAAACCGAGCAAGT
GATCTACGTGGACGGCGATGTTACTAGTTATGTGCAGACGCGAGGATCGG
TGCCACTCTTCTGGGAACAGCCAGGCGTCCAGGTTGGCTCGCACAAGGTG
AAGCTATCACGAGGATTCGAGACATCGGCCGCCGCCTTTGATCGACACAT
GAGCATGATGAGGCAACGTTACGGCTATCAGACGGTGGTGAATCTGCTAG
GCAGCTCCCTTGTTGGCAGCAAGGAGGGCGAGGCCATGCTGAGTAATGAG
TTCCAGCGTCATCACGGCATGTCAGCCCACAAGGATGTGCCGCATGTGGT
GTTTGACTATCATCAGGAGTGTCGCGGCGGCAATTTCTCGGCGCTGGCCA
AGCTCAAGGAACGGATCGTAGCCTGCGGTGCTAACTACGGCGTCTTCCAC
GCGTCCAATGGTCAGGTGTTGCGCGAGCAGTTCGGTGTTGTGCGCACGAA
TTGCCTAGACTGTTTGGACAGGACAAACTGTGTGCAGACGTATCTCGGGC
TTGACACGCTCGGTATCCAGCTAGAGGCTTTGAAAATGGGCGGCAAGCAG
CAGAATATTTCGCGGTTTGAGGAGATCTTCCGACAGATGTGGATCAACAA
CGGAAATGAGGTCAGCAAGATCTACGCCGGCACCGGGGCCATCCAGGGGG
GATCAAAACTAATGGATGGTGCGCGATCTGCAGCAAGAACAATTCAAAAT
AACCTACTGGACAACTCAAAGCAGGAAGCCATTGATGTCCTGCTAGTGGG
CTCCACGCTTAGCTCGGAGCTTGCGGATCGGGCTCGCATCCTACTGCCCT
CCAATATGTTGCATGCACCTACCACTGTGTTGAGAGAGCTATGCAAGCGC
TACACTGAATATGTGCGTCCTCGAATGGCACGTGTAGCCGTGGGTACCTA
TAACGTCAACGGCGGCAAGCACTTCCGCAGCATTGTGTTCAAGGATTCGC
TGGCCGATTGGCTGCTCGACTGCCATGCCCTTGCCCGCTCCAAGGCGCTT
GTAGATGTGAACAATCCGTCGGAGAACGTCGATCATCCGGTGGATATCTA
CGCCATTGGATTCGAGGAGATTGTGGATCTGAATGCTTCCAACATAATGG
CGGCCAGCACCGACAATGCCAAGTTGTGGGCCGAGGAGCTGCAGAAAACG
ATCTCGCGGGACAATGACTACGTGCTGCTCACATACCAGCAACTGGTGGG
CGTGTGCCTATACATCTACATCCGACCGGAGCACGCGCCGCACATCCGGG
ACGTGGCCATCGACTGTGTTAAGACAGGATTGGGTGGTGCCACTGGGAAT
AAGGGTGCCTGTGCCATTCGATTTGTGCTTCATGGTACTTCCATGTGCTT
CGTGTGTGCCCACTTTGCAGCCGGACAGTCACAGGTGGCTGAAAGGAACG
CTGACTACGCGGAAATCACCCGGAAGCTGGCCTTCCCGATGGGCAGGACG
CTAAAATCACACGACTGGGTGTTTTGGTGCGGCGACTTCAACTATCGCAT
CGACATGGAGAAGGACGAATTAAAGGAGTGCGTACGTAATGGAGATCTCT
CAACCGTCCTCGAGTTCGATCAATTGCGCAAGGAGCAGGAGGCTGGCAAT
GTGTTTGGCGAATTCCTCGAGGGAGAGATCACTTTCGACCCGACGTACAA
GTATGATTTGTTCAGCGACGACTACGACACCTCGGAGAAACAGCGAGCGC
CCGCCTGGACAGATCGGGTTCTCTGGCGTCGCAGGAAGGCGCTGGCCGAG
GGCGACTTTGCTGCCTCAGCCTGGAATCCCGGCAAATTGATTCACTACGG
TCGTTCGGAGCTAAAGCAGAGTGATCATAGACCCGTGATCGCTATTATTG
ATGCTGAGATAATGGAGATCGATCAGCAGCGGAGACGTGCTGTATTCGAG
CAGGTTATCCGAGATCTGGGTCCGCCGGACTCCACGATTGTGGTACATGT
CCTGGAGTCTTCAGCAACTGGAGATGAGGATGGACCAACCATATACGACG
AGAATGTGATGTCAGCCCTGATTACCGAGCTATCCAAGATGGGAGAGGTC
ACTTTGGTGCGCTATGTGGAGGACACCATGTGGGTCACATTTCGGGATGG
AGAATCGGCTTTAAATGCGTCTTCTAAGAAGAGTATCCAAGTATGCGGAT
TAGATCTTATCCTGGAGCTGAAGTCAAAGGACTGGCAGCATCTGGTGGAC
AGCGAGATAGAGCTATGCACCACGAACACCATACCGCTGTGCGCTAATCC
TGTAGAGCATGCACAACTCCTGCAGGCCATTACGCCGGAGTTGCCCCAGC
GGCCCAAGCAGCCGCCCACACGTCCCCCAGCCCGTCCCCCAATGCCTATG
TCGCCAAAGAACTCACCACGCCACCTGCCCCACGTCGGGGTCATCAGCAT
TGTGCCCAAGCCGGCAAAGCCACCGATGCCACCGCAACCGCAATCTCAAC
CTCTAATTCCGTCGCCGCTTCAGCCGCAGGTGGCGCCGCCTCGTCCGCCG
GCAATGGACACCACGCCATCCTCCAAATCGCAATCGCCAACGGAACTTGT
ATCCGCTAGTTCTTCGACGTCCTCTTCGGGAAAGACTTCGCCCACAGCTC
CAGCTGTGCTCTCCGGTCCGCCGACGCCGCCGCGCCAAATGCAGAGCAAG
CAGGCCACACCCGTCTCGACGCCCACGCGCCAAGTCGGTTCGCCCAAGGA
TCCGATTCCATCTGATACCGCCTACGAAACCGCCAGTAATATTTACGAGG
AGATTCAGGAGGATGTGCCTGCGCCACGCCATCCGCCGCCGGCTGGACCG
CCGCCAGTGATAGGAGCACCAATGGGCCCGCCGCCACCGCTGCCGAATCG
CAGGGGCCCACCACCCATACCAAATAGGAGCGGCAATGCTCCACCGCTGC
CCACGCGACCCGCCAACAACTGAAAGCTTTCTAGACCAT

BS16810.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
Synj-RC 3657 CG6562-PC 1..3657 17..3673 18285 100 Plus
Synj-RA 3657 CG6562-PA 1..3657 17..3673 18285 100 Plus
Synj-RB 3657 CG6562-PB 1..3657 17..3673 18285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
Synj-RC 4638 CG6562-RC 185..3841 17..3673 18285 100 Plus
Synj-RA 4655 CG6562-RA 202..3858 17..3673 18285 100 Plus
Synj-RB 4243 CG6562-RB 136..3792 17..3673 18285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22082703..22084903 1473..3673 11005 100 Plus
2R 25286936 2R 22081180..22082638 17..1475 7295 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:30:23 has no hits.

BS16810.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 17:10:47 Download gff for BS16810.complete
Subject Subject Range Query Range Percent Splice Strand
synj-RA 202..3857 17..3672 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:16:45 Download gff for BS16810.complete
Subject Subject Range Query Range Percent Splice Strand
synj-RB 136..3791 17..3672 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:05 Download gff for BS16810.complete
Subject Subject Range Query Range Percent Splice Strand
Synj-RB 136..3791 17..3672 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:05 Download gff for BS16810.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22082705..22084902 1475..3672 100   Plus
2R 22081180..22082637 17..1474 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:16:45 Download gff for BS16810.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17968685..17970142 17..1474 100 -> Plus
arm_2R 17970210..17972407 1475..3672 100   Plus

BS16810.pep Sequence

Translation from 16 to 3672

> BS16810.pep
MAMSKVIRVLEKSIAPSPHSVLLEHRNKSDSILFESHAVALLTQQETDVI
RKQYTKVCDAYGCLGALQLNAGESTVLFLVLVTGCVSMGKIGDIEIFRIT
QTTFVSLQNAAPNEDKISEVRKLLNSGTFYFAHTNASASASGASSYRFDI
TLCAQRRQQTQETDNRFFWNRMMHIHLMRFGIDCQSWLLQAMCGSVEVRT
VYIGAKQARAAIISRLSCERAGTRFNVRGTNDEGYVANFVETEQVIYVDG
DVTSYVQTRGSVPLFWEQPGVQVGSHKVKLSRGFETSAAAFDRHMSMMRQ
RYGYQTVVNLLGSSLVGSKEGEAMLSNEFQRHHGMSAHKDVPHVVFDYHQ
ECRGGNFSALAKLKERIVACGANYGVFHASNGQVLREQFGVVRTNCLDCL
DRTNCVQTYLGLDTLGIQLEALKMGGKQQNISRFEEIFRQMWINNGNEVS
KIYAGTGAIQGGSKLMDGARSAARTIQNNLLDNSKQEAIDVLLVGSTLSS
ELADRARILLPSNMLHAPTTVLRELCKRYTEYVRPRMARVAVGTYNVNGG
KHFRSIVFKDSLADWLLDCHALARSKALVDVNNPSENVDHPVDIYAIGFE
EIVDLNASNIMAASTDNAKLWAEELQKTISRDNDYVLLTYQQLVGVCLYI
YIRPEHAPHIRDVAIDCVKTGLGGATGNKGACAIRFVLHGTSMCFVCAHF
AAGQSQVAERNADYAEITRKLAFPMGRTLKSHDWVFWCGDFNYRIDMEKD
ELKECVRNGDLSTVLEFDQLRKEQEAGNVFGEFLEGEITFDPTYKYDLFS
DDYDTSEKQRAPAWTDRVLWRRRKALAEGDFAASAWNPGKLIHYGRSELK
QSDHRPVIAIIDAEIMEIDQQRRRAVFEQVIRDLGPPDSTIVVHVLESSA
TGDEDGPTIYDENVMSALITELSKMGEVTLVRYVEDTMWVTFRDGESALN
ASSKKSIQVCGLDLILELKSKDWQHLVDSEIELCTTNTIPLCANPVEHAQ
LLQAITPELPQRPKQPPTRPPARPPMPMSPKNSPRHLPHVGVISIVPKPA
KPPMPPQPQSQPLIPSPLQPQVAPPRPPAMDTTPSSKSQSPTELVSASSS
TSSSGKTSPTAPAVLSGPPTPPRQMQSKQATPVSTPTRQVGSPKDPIPSD
TAYETASNIYEEIQEDVPAPRHPPPAGPPPVIGAPMGPPPPLPNRRGPPP
IPNRSGNAPPLPTRPANN*

BS16810.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
Synj-PC 1218 CG6562-PC 1..1218 1..1218 6383 100 Plus
Synj-PA 1218 CG6562-PA 1..1218 1..1218 6383 100 Plus
Synj-PB 1218 CG6562-PB 1..1218 1..1218 6383 100 Plus
Ocrl-PB 850 CG3573-PB 168..497 521..882 487 33.4 Plus
Ocrl-PA 850 CG3573-PA 168..497 521..882 487 33.4 Plus