Clone Sequence Records
BS16811.3prime Sequence
411 bp (411 high quality bases) assembled on 2007-05-15
> BS16811.3prime
ATGGTCTAGAAAGCTTTTAGCCAAGATACTGCCACTGCGATGGGTATGAG
ATGCAGCTGGCAACCATTAGTGTGTAAATTTTTACTAGAATTGCACATAT
CTTCCTCACAAAAGCACATACGTCCACTGCCTGAACCTTCCACCATGCAC
ACGTGATCGACCATGAATAAATTGATCTGTAACTGTGACGTACACATGCG
TCGCACCACCTTGGCAGGGCTGTATAGTTGAAAGGATCCTTGCAGCGGGC
ATCAGTCCAGGAGTCGCACTCATAGCAGTAAATCGATCGCGTTTGACATT
CGGCTGAGGTCTGCGGAATCCATATGAAAGTTAGAAATCCGATAACGGCT
GTTAATACCAACAGCCAATTGCCAACTGCATTTCTCTGCGTCCACATGTC
GACTGATAACT
BS16811.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:26:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33472-PA | 255 | CG33472-RA | 1..254 | 397..144 | 1270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:59:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qvr-RB | 5055 | CG33472-RB | 725..913 | 397..209 | 945 | 100 | Minus |
qvr-RB | 5055 | CG33472-RB | 984..1178 | 211..17 | 915 | 97.9 | Minus |
qvr-RC | 5046 | CG33472-RC | 975..1169 | 211..17 | 915 | 97.9 | Minus |
qvr-RC | 5046 | CG33472-RC | 725..904 | 397..209 | 455 | 84.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:59:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11447533..11447727 | 211..17 | 915 | 97.9 | Minus |
2R | 25286936 | 2R | 11446130..11446189 | 351..292 | 300 | 100 | Minus |
2R | 25286936 | 2R | 11447156..11447209 | 291..238 | 270 | 100 | Minus |
2R | 25286936 | 2R | 11444712..11444760 | 397..349 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:59:19 has no hits.
BS16811.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:26:56 Download gff for
BS16811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33472-PA | 1..255 | 143..397 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:47:47 Download gff for
BS16811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qvr-RB | 986..1178 | 17..209 | 97 | | Minus |
qvr-RB | 725..912 | 210..397 | 100 | -> | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:23 Download gff for
BS16811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qvr-RB | 725..912 | 210..397 | 100 | -> | Minus |
qvr-RB | 986..1178 | 17..209 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:23 Download gff for
BS16811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11444712..11444760 | 349..397 | 100 | -> | Minus |
2R | 11446133..11446189 | 292..348 | 100 | -> | Minus |
2R | 11447156..11447208 | 239..291 | 100 | -> | Minus |
2R | 11447270..11447298 | 210..238 | 100 | -> | Minus |
2R | 11447535..11447727 | 17..209 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:47:47 Download gff for
BS16811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7332217..7332265 | 349..397 | 100 | -> | Minus |
arm_2R | 7333638..7333694 | 292..348 | 100 | -> | Minus |
arm_2R | 7334661..7334713 | 239..291 | 100 | -> | Minus |
arm_2R | 7334775..7334803 | 210..238 | 100 | -> | Minus |
arm_2R | 7335040..7335232 | 17..209 | 97 | | Minus |
BS16811.5prime Sequence
411 bp (411 high quality bases) assembled on 2007-05-15
> BS16811.5prime
GAAGTTATCAGTCGACATGTGGACGCAGAGAAATGCAGTTGGCAATTGGC
TGTTGGTATTAACAGCCGTTATCGGATTTCTAACTTTCATATGGATTCCG
CAGACCTCAGCCGAATGTCAAACGCGATCGATTTACTGCTATGAGTGCGA
CTCCTGGACTGATGCCCGCTGCAAGGATCCTTTCAACTATACAGCCCTGC
CAAGGTGGTGCGACGCATGTGTACGTCACAGTTACAGATCAATTTATTCA
TGGTCGATCACGTGTGCATGGTGGAAGGTTCAGGCAGTGGACGTATGTGC
TTTTGTGAGGAAGATATGTGCAATTCTAGTAAAAATTTACACACTAATGG
TTGCCAGCTGCATCTCATACCCATCGCAGTGGCAGTATCTTGGCTAAAAG
CTTTCTAGACC
BS16811.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:21:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33472-PA | 255 | CG33472-RA | 1..254 | 17..270 | 1270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:42:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qvr-RB | 5055 | CG33472-RB | 725..913 | 17..205 | 945 | 100 | Plus |
qvr-RB | 5055 | CG33472-RB | 984..1178 | 203..397 | 915 | 97.9 | Plus |
qvr-RC | 5046 | CG33472-RC | 975..1169 | 203..397 | 915 | 97.9 | Plus |
qvr-RC | 5046 | CG33472-RC | 725..904 | 17..205 | 455 | 84.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:42:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11447533..11447727 | 203..397 | 915 | 97.9 | Plus |
2R | 25286936 | 2R | 11446130..11446189 | 63..122 | 300 | 100 | Plus |
2R | 25286936 | 2R | 11447156..11447209 | 123..176 | 270 | 100 | Plus |
2R | 25286936 | 2R | 11444712..11444760 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:42:13 has no hits.
BS16811.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:21:03 Download gff for
BS16811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33472-PA | 1..255 | 17..271 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:26:05 Download gff for
BS16811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qvr-RB | 725..912 | 17..204 | 100 | -> | Plus |
qvr-RB | 986..1178 | 205..397 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:28:45 Download gff for
BS16811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qvr-RB | 986..1178 | 205..397 | 97 | | Plus |
qvr-RB | 725..912 | 17..204 | 100 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:28:45 Download gff for
BS16811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11444712..11444760 | 17..65 | 100 | -> | Plus |
2R | 11446133..11446189 | 66..122 | 100 | -> | Plus |
2R | 11447156..11447208 | 123..175 | 100 | -> | Plus |
2R | 11447270..11447298 | 176..204 | 100 | -> | Plus |
2R | 11447535..11447727 | 205..397 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:26:05 Download gff for
BS16811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7332217..7332265 | 17..65 | 100 | -> | Plus |
arm_2R | 7333638..7333694 | 66..122 | 100 | -> | Plus |
arm_2R | 7334661..7334713 | 123..175 | 100 | -> | Plus |
arm_2R | 7334775..7334803 | 176..204 | 100 | -> | Plus |
arm_2R | 7335040..7335232 | 205..397 | 97 | | Plus |
BS16811.complete Sequence
413 bp assembled on 2007-05-07
GenBank Submission: FJ638196
> BS16811.complete
GAAGTTATCAGTCGACATGTGGACGCAGAGAAATGCAGTTGGCAATTGGC
TGTTGGTATTAACAGCCGTTATCGGATTTCTAACTTTCATATGGATTCCG
CAGACCTCAGCCGAATGTCAAACGCGATCGATTTACTGCTATGAGTGCGA
CTCCTGGACTGATGCCCGCTGCAAGGATCCTTTCAACTATACAGCCCTGC
CAAGGTGGTGCGACGCATGTGTACGTCACAGTTACAGATCAATTTATTCA
TGGTCGATCACGTGTGCATGGTGGAAGGTTCAGGCAGTGGACGTATGTGC
TTTTGTGAGGAAGATATGTGCAATTCTAGTAAAAATTTACACACTAATGG
TTGCCAGCTGCATCTCATACCCATCGCAGTGGCAGTATCTTGGCTAAAAG
CTTTCTAGACCAT
BS16811.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qvr-RB | 477 | CG33472-PB | 1..189 | 17..205 | 945 | 100 | Plus |
qvr-RB | 477 | CG33472-PB | 260..454 | 203..397 | 915 | 97.9 | Plus |
qvr-RC | 468 | CG33472-PC | 251..445 | 203..397 | 915 | 97.9 | Plus |
qvr-RC | 468 | CG33472-PC | 96..180 | 121..205 | 425 | 100 | Plus |
qvr-RC | 468 | CG33472-PC | 1..49 | 17..65 | 245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:55:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qvr-RB | 5055 | CG33472-RB | 725..913 | 17..205 | 945 | 100 | Plus |
qvr-RB | 5055 | CG33472-RB | 984..1178 | 203..397 | 915 | 97.9 | Plus |
qvr-RC | 5046 | CG33472-RC | 975..1169 | 203..397 | 915 | 97.9 | Plus |
qvr-RC | 5046 | CG33472-RC | 820..904 | 121..205 | 425 | 100 | Plus |
qvr-RC | 5046 | CG33472-RC | 725..773 | 17..65 | 245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:55:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11447533..11447727 | 203..397 | 915 | 97.9 | Plus |
2R | 25286936 | 2R | 11446130..11446189 | 63..122 | 300 | 100 | Plus |
2R | 25286936 | 2R | 11447156..11447209 | 123..176 | 270 | 100 | Plus |
2R | 25286936 | 2R | 11444712..11444760 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:55:23 has no hits.
BS16811.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:02 Download gff for
BS16811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33472-RA | 1..255 | 17..271 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:07 Download gff for
BS16811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33472-RA | 704..1084 | 17..397 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:47 Download gff for
BS16811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qvr-RB | 725..912 | 17..204 | 100 | -> | Plus |
qvr-RB | 986..1176 | 205..395 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:02 Download gff for
BS16811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33472-RA | 704..1084 | 17..397 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:24 Download gff for
BS16811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qvr-RB | 986..1176 | 205..395 | 97 | | Plus |
qvr-RB | 725..912 | 17..204 | 100 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:24 Download gff for
BS16811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11444712..11444760 | 17..65 | 100 | -> | Plus |
2R | 11446133..11446189 | 66..122 | 100 | -> | Plus |
2R | 11447156..11447208 | 123..175 | 100 | -> | Plus |
2R | 11447270..11447298 | 176..204 | 100 | -> | Plus |
2R | 11447535..11447725 | 205..395 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:47 Download gff for
BS16811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7332217..7332265 | 17..65 | 100 | -> | Plus |
arm_2R | 7333638..7333694 | 66..122 | 100 | -> | Plus |
arm_2R | 7334661..7334713 | 123..175 | 100 | -> | Plus |
arm_2R | 7334775..7334803 | 176..204 | 100 | -> | Plus |
arm_2R | 7335040..7335230 | 205..395 | 97 | | Plus |
BS16811.pep Sequence
Translation from 16 to 396
> BS16811.pep
MWTQRNAVGNWLLVLTAVIGFLTFIWIPQTSAECQTRSIYCYECDSWTDA
RCKDPFNYTALPRWCDACVRHSYRSIYSWSITCAWWKVQAVDVCAFVRKI
CAILVKIYTLMVASCISYPSQWQYLG*
BS16811.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qvr-PB | 158 | CG33472-PB | 1..86 | 1..77 | 361 | 81.6 | Plus |
qvr-PC | 155 | CG33472-PC | 1..83 | 1..77 | 248 | 62.5 | Plus |