Clone BS16814 Report

Search the DGRC for BS16814

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:168
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptMgat2-RA
Protein status:BS16814.pep: full length peptide match
Sequenced Size:1859

Clone Sequence Records

BS16814.complete Sequence

1859 bp assembled on 2009-12-07

GenBank Submission: KX800561

> BS16814.complete
GAAGTTATCAGTCGACATGTCGAAAATGAGGGGTCGCATTCTGATCCCAC
TGCCCAATACCGGAGCGATGGGTCGCAAGCGCAACAACTTCTACATGCGG
AGTCTGTTCCTGCTGGCCCTGGGCATTTTCGGTCTGCTCCAGTACAACAA
CTTCAATTATCTGGACTCGCGGGACAATGTGCTGGGCGACGCGGTGACCA
ACGACTCGGACGACGCCATCCTGGCCATGGTGCCCGCCACCCTGCACAAG
TATCTGACGCCCCACTCGCGCAATCACAGCGCCTCGGGAGCAGGAGCCCT
CAACGGCGCGGCCCTGCTCCTGAATGCCAGTAGTCCGGGCGCAGCTACTG
CCAGCACCATCAGCTTCGACGTGTACCATCCTCCGAATATCACCGAGATC
AAGCGCCAGATCGTCAGGTACAACGACATGCAGATGGTGCTCAACGAGGA
CGTCTTTGGACCGCTGCAGAACGACTCTGTGATAATCGTGGTCCAGGTGC
ACACGAGGATCACCTACCTGCGCCACCTGATCGTCAGCCTGGCGCAGGCC
CGGGACATTTCGAAGGTGCTGCTGGTGTTCTCGCACGACTACTACGACGA
CGACATCAACGACCTGGTGCAGCAGATCGACTTCTGCAAGGTGATGCAGA
TCTTCTACCCGTACTCCATTCAGACGCATCCTAACGAGTATCCCGGCGTG
GATCCCAACGACTGTCCGCGAAACATCAAAAAGGAGCAAGCTCTGATCAC
CAACTGCAACAATGCGATGTATCCCGATCTCTATGGCCACTATCGGGAGG
CGAAGTTCACGCAGACGAAGCACCATTGGATCTGGAAGGCCAACCGGGTG
TTCAACGAACTGGAGGTGACCCGCTATCACACAGGACTGGTGCTGTTCCT
CGAGGAGGACCACTACGTGGCCGAGGACTTCCTGTACCTGCTGGCTATGA
TGCAGCAACGCACCAAAGACTTGTGCCCCCAGTGCAACGTGCTGTCCCTG
GGCACCTATCTCAAGACCTTCAACTACTACACGTACCACAGCAAGACTAA
CAAGAAATCCTATGCTTCCTCGCTGATCTCGACAAACAGTCTATTAGGAT
ACAATAGGAATAACAATAGAAACTCTGTGCAATTAGCTGTGTCGTCCTCT
TACTCCTCCTCATCATCTGCGCAATCACCACCGCCATCCAAAGTCTATGT
GGGCGACACATCTGACAACCAGAGAGCCAGTGACTCCAGTAGCAGGCGGG
GCAACCTCATCAACACTGTCACCGACACAGCCACAGCCACCGCCGCCACA
TCCGACACCAGCAATAACGAGCAAAGTAGCCATAGCAGCAGCAAAAATGG
TGCACAAACATGGAACTATCATGTCCTGCCGTCATTGTATTCCGTCTATC
AGAAGGTGGAGGTCATGCCCTGGGTCAGCAGCAAGCACAACATGGGCTTC
GCCTTCAATCGCACCACCTGGTCGAACATCCGGAAATGCGCCCGCCACTT
CTGCACCTACGATGACTACAACTGGGACTGGTCCTTGCAGCACGTTTCGC
AGCAGTGTCTGCGGCGAAAGCTGCACGCCATGATTGTCAAGGGGCCGCGA
GTCTTCCACATCGGAGAATGCGGCGTTCATCACAAGAACAAGAACTGCGA
GTCCAACCAGGTGATCTCGAAGGTGCAGCACGTGCTGCGCATAGCCCGCA
ACTCGCACCAGCTCTTCCCGCGCTCCCTCACCCTCACGGTGCCCAGTCTG
ATGAAGAAGTCGAAGCTGCGCAAAGGCAACGGCGGCTGGGGCGACATGCG
GGATCACGAGCTGTGCCTCAACATGACGCTGGCCACGAGGTAAAAGCTTT
CTAGACCAT

BS16814.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
Mgat2-RA 1827 CG7921-PA 1..1827 17..1843 9135 100 Plus
Mgat2-RC 1530 CG7921-PC 1..1029 17..1045 5145 100 Plus
Mgat2-RB 1467 CG7921-PB 1..1029 17..1045 5145 100 Plus
Mgat2-RC 1530 CG7921-PC 1083..1530 1396..1843 2210 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
Mgat2-RA 3331 CG7921-RA 642..2472 13..1843 9140 99.9 Plus
Mgat2-RC 3034 CG7921-RC 642..1674 13..1045 5150 99.9 Plus
Mgat2-RB 2672 CG7921-RB 343..1375 13..1045 5150 99.9 Plus
Mgat2-RC 3034 CG7921-RC 1728..2175 1396..1843 2210 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30018691..30019118 738..311 2140 100 Minus
3R 32079331 3R 30017623..30017986 1407..1044 1820 100 Minus
3R 32079331 3R 30016372..30016595 1843..1620 1120 100 Minus
3R 32079331 3R 30016660..30016876 1620..1404 1085 100 Minus
3R 32079331 3R 30018266..30018431 1045..880 830 100 Minus
3R 32079331 3R 30019182..30019331 311..162 750 100 Minus
3R 32079331 3R 30018487..30018633 885..739 735 100 Minus
3R 32079331 3R 30019389..30019518 161..32 650 100 Minus
Blast to na_te.dros performed 2014-11-28 01:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6844 1228..1347 175 64.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2327..2423 1251..1347 151 64.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6919 1216..1347 138 60.2 Plus

BS16814.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:10 Download gff for BS16814.complete
Subject Subject Range Query Range Percent Splice Strand
Mgat2-RA 1..1827 17..1843 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:56 Download gff for BS16814.complete
Subject Subject Range Query Range Percent Splice Strand
Mgat2-RA 683..2507 17..1841 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:52:58 Download gff for BS16814.complete
Subject Subject Range Query Range Percent Splice Strand
Mgat2-RA 646..2470 17..1841 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:30:02 Download gff for BS16814.complete
Subject Subject Range Query Range Percent Splice Strand
Mgat2-RA 683..2507 17..1841 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:57 Download gff for BS16814.complete
Subject Subject Range Query Range Percent Splice Strand
Mgat2-RA 646..2470 17..1841 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:57 Download gff for BS16814.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30019182..30019331 162..311 100 <- Minus
3R 30019389..30019517 33..161 100 <- Minus
3R 30019595..30019610 17..32 100   Minus
3R 30016374..30016594 1621..1841 100 <- Minus
3R 30016660..30016874 1406..1620 100 <- Minus
3R 30017625..30017984 1046..1405 100 <- Minus
3R 30018266..30018426 885..1045 100 <- Minus
3R 30018488..30018633 739..884 100 <- Minus
3R 30018691..30019117 312..738 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:52:58 Download gff for BS16814.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25842096..25842316 1621..1841 100 <- Minus
arm_3R 25842382..25842596 1406..1620 100 <- Minus
arm_3R 25843347..25843706 1046..1405 100 <- Minus
arm_3R 25843988..25844148 885..1045 100 <- Minus
arm_3R 25844210..25844355 739..884 100 <- Minus
arm_3R 25844413..25844839 312..738 100 <- Minus
arm_3R 25844904..25845053 162..311 100 <- Minus
arm_3R 25845111..25845239 33..161 100 <- Minus
arm_3R 25845317..25845332 17..32 100   Minus

BS16814.3prime Sequence

884 bp (790 high quality bases) assembled on 2007-05-15

> BS16814.3prime
ATGGTCTAGAAAGCTTTTACCTCGTGGCCAGCGTCATGTTGAGGCACAGC
TCGTGATCCCGCATGTCGCCCCAGCCGCCGTTGCCTTTGCGCAGCTTCGA
CTTCTTCATCAGACTGGGCACCGTGAGGGTGAGGGAGCGCGGGAAGAGCT
GGTGCGAGTTGCGGGCTATGCGCAGCACGTGCTGCACCTTCGAGATCACC
TGGTTGGACTCGCAGTTCTTGTTCTTGTGATGAACGCCGCATTCTCCGAT
GTGGAAGACTCGCGGCCCCTTGACAATCATGGCGTGCAGCTTTCGCCGCA
GACACTGCTGCGAAACGTGCTGCAAGGACCAGTCCCAGTTGTAGTCATCG
TAGGTGCAGAAGTGGCGGGCGCATTTCCGGATGTTCGACCAGGTGGTGCG
ATTGAAGGCGAAGCCCATGTTGTGCTTGCTGCTGACCCAGGGCATGACCT
CCACCTTCTGATAGACGGAATACAATGACGGCAGGACATGATAGTTCCAT
GTTTGTGCACCATTTTTGCTGCTGCTATGGCTACTTTGCTCGTTATTGCT
GGTGTCGGATGTGGCGGCGGTGGCTGTGGCTGTGTCGGTGACAGTGTTGA
TGAGGTTGCCCCGCCTGCTACTGGAGTCACTGGCTCTCTGGTTGTCAGAT
GTGTCGCCCACATAGACTTTGGATGGCGGTGGTGATTGCGCAGATGATGA
GGAGGAGTAAGAGGACGACACAGCTAATTGCACAGAGTTTCTATTGTTAT
TCCTATTGTATCCTAATAGACTGTTTGTCGAGATCAGCGAGGAAGCATAG
GATTTCTTGTTAGTCTTGCTGTGGTACGTGTAGTAGTTGAAGGTCTTGAG
ATAGGTGCCCAGGGACAGCACGTTGCACTGGGGG

BS16814.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7921-PA 1827 Mgat2-RA 960..1827 884..17 4340 100 Minus
CG7921-PB 1467 Mgat2-RB 1027..1467 457..17 2205 100 Minus
CG7921-PB 1467 Mgat2-RB 960..1029 884..815 350 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:25:15
Subject Length Description Subject Range Query Range Score Percent Strand
Mgat2-RA 3331 CG7921-RA 1605..2472 884..17 4340 100 Minus
Mgat2-RC 3034 CG7921-RC 1728..2175 464..17 2210 99.6 Minus
Mgat2-RB 2672 CG7921-RB 1373..1813 457..17 2205 100 Minus
Mgat2-RC 3034 CG7921-RC 1605..1674 884..815 350 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:25:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30017623..30017986 453..816 1820 100 Plus
3R 32079331 3R 30016372..30016595 17..240 1120 100 Plus
3R 32079331 3R 30016660..30016876 240..456 1085 100 Plus
3R 32079331 3R 30018266..30018335 815..884 350 100 Plus
Blast to na_te.dros performed 2015-02-13 15:25:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6844 632..513 175 64.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6822 609..514 155 67.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2327..2423 609..513 151 64.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6919 644..513 138 60.2 Minus

BS16814.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:24:05 Download gff for BS16814.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7921-PA 960..1827 17..884 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:16:24 Download gff for BS16814.3prime
Subject Subject Range Query Range Percent Splice Strand
Mgat2-RA 1605..2475 13..884 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:41:15 Download gff for BS16814.3prime
Subject Subject Range Query Range Percent Splice Strand
Mgat2-RA 1605..2475 13..884 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:41:15 Download gff for BS16814.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30016369..30016594 13..239 99 <- Plus
3R 30016660..30016874 240..454 100 <- Plus
3R 30017625..30017984 455..814 100 <- Plus
3R 30018266..30018335 815..884 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:16:24 Download gff for BS16814.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25842091..25842316 13..239 99 <- Plus
arm_3R 25842382..25842596 240..454 100 <- Plus
arm_3R 25843347..25843706 455..814 100 <- Plus
arm_3R 25843988..25844057 815..884 100   Plus

BS16814.5prime Sequence

903 bp (799 high quality bases) assembled on 2007-05-15

> BS16814.5prime
GAAGTTATCAGTCGACATGTCGAAAATGAGGGGTCGCATTCTGATCCCAC
TGCCCAATACCGGAGCGATGGGTCGCAAGCGCAACAACTTCTACATGCGG
AGTCTGTTCCTGCTGGCCCTGGGCATTTTCGGTCTGCTCCAGTACAACAA
CTTCAATTATCTGGACTCGCGGGACAATGTGCTGGGCGACGCGGTGACCA
ACGACTCGGACGACGCCATCCTGGCCATGGTGCCCGCCACCCTGCACAAG
TATCTGACGCCCCACTCGCGCAATCACAGCGCCTCGGGAGCAGGAGCCCT
CAACGGCGCGGCCCTGCTCCTGAATGCCAGTAGTCCGGGCGCAGCTACTG
CCAGCACCATCAGCTTCGACGTGTACCATCCTCCGAATATCACCGAGATC
AAGCGCCAGATCGTCAGGTACAACGACATGCAGATGGTGCTCAACGAGGA
CGTCTTTGGACCGCTGCAGAACGACTCTGTGATAATCGTGGTCCAGGTGC
ACACGAGGATCACCTACCTGCGCCACCTGATCGTCAGCCTGGCGCAGGCC
CGGGACATTTCGAAGGTGCTGCTGGTGTTCTCGCACGACTACTACGACGA
CGACATCAACGACCTGGTGCAGCAGATCGACTTCTGCAAGGTGATGCAGA
TCTTCTACCCGTACTCCATTCAGACGCATCCTAACGAGTATCCCGGCGTG
GATCCCAACGACTGTCCGCGAAACATCAAAAAGGAGCAAGCTCTGATCAC
CAACTGCAACAATGCGATGTATCCCGATCTCTATGGCCACTATCGGGAGG
CGAAAGTCACGCAGACGAAGCACCATTGGATCTGGAAGCCAACCGGGTGT
TCAACGAACTGGAGGTGACCCGCTATCACACAGGACTGGTGCTGTTCCTC
GAG

BS16814.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7921-PA 1827 Mgat2-RA 1..822 17..838 4060 99.7 Plus
CG7921-PB 1467 Mgat2-RB 1..822 17..838 4060 99.7 Plus
CG7921-PA 1827 Mgat2-RA 823..888 838..903 330 100 Plus
CG7921-PB 1467 Mgat2-RB 823..888 838..903 330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
Mgat2-RC 3034 CG7921-RC 642..1533 13..903 4390 99.6 Plus
Mgat2-RB 2672 CG7921-RB 343..1234 13..903 4390 99.6 Plus
Mgat2-RA 3331 CG7921-RA 642..1533 13..903 4390 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30018691..30019118 738..311 2140 100 Minus
3R 32079331 3R 30019182..30019331 311..162 750 100 Minus
3R 32079331 3R 30018487..30018633 884..739 655 98 Minus
3R 32079331 3R 30019389..30019518 161..32 650 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:25:50 has no hits.

BS16814.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:18:53 Download gff for BS16814.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7921-PB 1..888 17..903 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:30:30 Download gff for BS16814.5prime
Subject Subject Range Query Range Percent Splice Strand
Mgat2-RA 642..1533 13..903 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:02:09 Download gff for BS16814.5prime
Subject Subject Range Query Range Percent Splice Strand
Mgat2-RA 642..1533 13..903 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:02:09 Download gff for BS16814.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30019182..30019331 162..311 100 <- Minus
3R 30019389..30019517 33..161 100 <- Minus
3R 30019595..30019614 13..32 95   Minus
3R 30018691..30019117 312..738 100 <- Minus
3R 30018407..30018426 884..903 100 <- Minus
3R 30018488..30018633 739..883 97 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:30:30 Download gff for BS16814.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25844129..25844148 884..903 100 <- Minus
arm_3R 25844210..25844355 739..883 97 <- Minus
arm_3R 25844413..25844839 312..738 100 <- Minus
arm_3R 25844904..25845053 162..311 100 <- Minus
arm_3R 25845111..25845239 33..161 100 <- Minus
arm_3R 25845317..25845336 13..32 95   Minus

BS16814.pep Sequence

Translation from 16 to 1842

> BS16814.pep
MSKMRGRILIPLPNTGAMGRKRNNFYMRSLFLLALGIFGLLQYNNFNYLD
SRDNVLGDAVTNDSDDAILAMVPATLHKYLTPHSRNHSASGAGALNGAAL
LLNASSPGAATASTISFDVYHPPNITEIKRQIVRYNDMQMVLNEDVFGPL
QNDSVIIVVQVHTRITYLRHLIVSLAQARDISKVLLVFSHDYYDDDINDL
VQQIDFCKVMQIFYPYSIQTHPNEYPGVDPNDCPRNIKKEQALITNCNNA
MYPDLYGHYREAKFTQTKHHWIWKANRVFNELEVTRYHTGLVLFLEEDHY
VAEDFLYLLAMMQQRTKDLCPQCNVLSLGTYLKTFNYYTYHSKTNKKSYA
SSLISTNSLLGYNRNNNRNSVQLAVSSSYSSSSSAQSPPPSKVYVGDTSD
NQRASDSSSRRGNLINTVTDTATATAATSDTSNNEQSSHSSSKNGAQTWN
YHVLPSLYSVYQKVEVMPWVSSKHNMGFAFNRTTWSNIRKCARHFCTYDD
YNWDWSLQHVSQQCLRRKLHAMIVKGPRVFHIGECGVHHKNKNCESNQVI
SKVQHVLRIARNSHQLFPRSLTLTVPSLMKKSKLRKGNGGWGDMRDHELC
LNMTLATR*

BS16814.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
Mgat2-PA 608 CG7921-PA 1..608 1..608 3227 100 Plus
Mgat2-PB 488 CG7921-PB 1..367 1..369 1827 94.6 Plus
Mgat2-PC 509 CG7921-PC 1..347 1..347 1821 98.8 Plus
Mgat2-PB 488 CG7921-PB 333..488 447..608 822 92.6 Plus
Mgat2-PC 509 CG7921-PC 357..509 456..608 821 96.7 Plus