Clone BS16816 Report

Search the DGRC for BS16816

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:168
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG33307-RA
Protein status:BS16816.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16816.3prime Sequence

543 bp (543 high quality bases) assembled on 2007-05-15

> BS16816.3prime
ATGGTCTAGAAAGCTTCTATTCGTTCTGGCTCGCTATCCCATTGCCAACG
ACTTTGCCACTAATCTTGGCCATTTCCCAGAAGTAATCGGCCACATCGCT
CACGAACTTGGTGGATATATTCTGCAGCTTCTGGCCGGTCAGGAGTGTCT
TATATTGCAAGTCGGTGAGTCCTGTCTCGGATTGCCGATTAATCAGCAGT
GGAGAGTCCTTGAACTCTTCGAAGATATTCTGCCACAGCTCATCCTTTCG
GTCCAGTTCCTGCTCATCAATGGCTTGGCTCAGGCGCGTTATATAAAGAC
TGATATCTTGGAATCGCTTGGTCTGGGGATTCAGAGCGGCCTTCACCTCG
GAGAAATAGGCGATTTGTGATCGGAACAACGAGTTCAGCAGGTGGACTGT
CTCCTCCTTGGCCTGTCTCTCCAACTCCCTTTGCACTGGATCATCGGAGT
TTAGGAGTTGTGGATTTGTGGGCTTGGCAGCCACTATTAATAGCTGGGCT
ACTAAAAGTAAAGGAATATATTTCAGCATGTCGACTGATAACT

BS16816.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:26:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG33307-PA 513 CG33307-RA 1..513 529..17 2565 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:15:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG33307-RB 1832 CG33307-RB 42..554 529..17 2565 100 Minus
CG33307-RA 586 CG33307-RA 42..554 529..17 2565 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:15:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13841096..13841377 215..496 1410 100 Plus
2L 23513712 2L 13840838..13841037 17..216 1000 100 Plus
2L 23513712 2L 13841444..13841479 494..529 180 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:15:10 has no hits.

BS16816.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:27:01 Download gff for BS16816.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33307-PA 1..513 17..529 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:41:46 Download gff for BS16816.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33307-RA 32..562 9..539 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:20:47 Download gff for BS16816.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33307-RA 32..562 9..539 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:20:47 Download gff for BS16816.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13840830..13841035 9..214 98 <- Plus
2L 13841096..13841374 215..493 100 <- Plus
2L 13841444..13841489 494..539 91   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:41:46 Download gff for BS16816.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13840830..13841035 9..214 98 <- Plus
arm_2L 13841096..13841374 215..493 100 <- Plus
arm_2L 13841444..13841489 494..539 91   Plus

BS16816.5prime Sequence

543 bp (543 high quality bases) assembled on 2007-05-15

> BS16816.5prime
GAAGTTATCAGTCGACATGCTGAAATATATTCCTTTACTTTTAGTAGCCC
AGCTATTAATAGTGGCTGCCAAGCCCACAAATCCACAACTCCTAAACTCC
GATGATCCAGTGCAAAGGGAGTTGGAGAGACAGGCCAAGGAGGAGACAGT
CCACCTGCTGAACTCGTTGTTCCGATCACAAATCGCCTATTTCTCCGAGG
TGAAGGCCGCTCTGAATCCCCAGACCAAGCGATTCCAAGATATCAGTCTT
TATATAACGCGCCTGAGCCAAGCCATTGATGAGCAGGAACTGGACCGAAA
GGATGAGCTGTGGCAGAATATCTTCGAAGAGTTCAAGGACTCTCCACTGC
TGATTAATCGGCAATCCGAGACAGGACTCACCGACTTGCAATATAAGACA
CTCCTGACCGGCCAGAAGCTGCAGAATATATCCACCAAGTTCGTGAGCGA
TGTGGCCGATTACTTCTGGGAAATGGCCAAGATTAGTGGCAAAGTCGTTG
GCAATGGGATAGCGAGCCAGAACGAATAGAAGCTTTCTAGACC

BS16816.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG33307-PA 513 CG33307-RA 1..513 17..529 2565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:27:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG33307-RB 1832 CG33307-RB 42..554 17..529 2565 100 Plus
CG33307-RA 586 CG33307-RA 42..554 17..529 2565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:27:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13841096..13841377 331..50 1410 100 Minus
2L 23513712 2L 13840838..13841037 529..330 1000 100 Minus
2L 23513712 2L 13841444..13841479 52..17 180 100 Minus
Blast to na_te.dros performed on 2015-02-13 02:27:43 has no hits.

BS16816.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:21:08 Download gff for BS16816.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33307-PA 1..513 17..529 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:46:46 Download gff for BS16816.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33307-RA 32..562 7..537 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:21:33 Download gff for BS16816.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33307-RA 32..562 7..537 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:21:33 Download gff for BS16816.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13840830..13841035 332..537 98 <- Minus
2L 13841096..13841374 53..331 100 <- Minus
2L 13841444..13841489 7..52 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:46:46 Download gff for BS16816.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13840830..13841035 332..537 98 <- Minus
arm_2L 13841096..13841374 53..331 100 <- Minus
arm_2L 13841444..13841489 7..52 91   Minus

BS16816.complete Sequence

545 bp assembled on 2007-05-07

GenBank Submission: FJ638197

> BS16816.complete
GAAGTTATCAGTCGACATGCTGAAATATATTCCTTTACTTTTAGTAGCCC
AGCTATTAATAGTGGCTGCCAAGCCCACAAATCCACAACTCCTAAACTCC
GATGATCCAGTGCAAAGGGAGTTGGAGAGACAGGCCAAGGAGGAGACAGT
CCACCTGCTGAACTCGTTGTTCCGATCACAAATCGCCTATTTCTCCGAGG
TGAAGGCCGCTCTGAATCCCCAGACCAAGCGATTCCAAGATATCAGTCTT
TATATAACGCGCCTGAGCCAAGCCATTGATGAGCAGGAACTGGACCGAAA
GGATGAGCTGTGGCAGAATATCTTCGAAGAGTTCAAGGACTCTCCACTGC
TGATTAATCGGCAATCCGAGACAGGACTCACCGACTTGCAATATAAGACA
CTCCTGACCGGCCAGAAGCTGCAGAATATATCCACCAAGTTCGTGAGCGA
TGTGGCCGATTACTTCTGGGAAATGGCCAAGATTAGTGGCAAAGTCGTTG
GCAATGGGATAGCGAGCCAGAACGAATAGAAGCTTTCTAGACCAT

BS16816.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:18:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG33307-RB 513 CG33307-PB 1..513 17..529 2565 100 Plus
CG33307-RA 513 CG33307-PA 1..513 17..529 2565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG33307-RB 1832 CG33307-RB 42..554 17..529 2565 100 Plus
CG33307-RA 586 CG33307-RA 42..554 17..529 2565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13841096..13841377 331..50 1410 100 Minus
2L 23513712 2L 13840838..13841037 529..330 1000 100 Minus
2L 23513712 2L 13841444..13841479 52..17 180 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:18:52 has no hits.

BS16816.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:40 Download gff for BS16816.complete
Subject Subject Range Query Range Percent Splice Strand
CG33307-RA 1..513 17..529 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:53:57 Download gff for BS16816.complete
Subject Subject Range Query Range Percent Splice Strand
CG33307-RA 21..551 7..537 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:35 Download gff for BS16816.complete
Subject Subject Range Query Range Percent Splice Strand
CG33307-RA 42..554 17..529 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:40 Download gff for BS16816.complete
Subject Subject Range Query Range Percent Splice Strand
CG33307-RA 21..551 7..537 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:10 Download gff for BS16816.complete
Subject Subject Range Query Range Percent Splice Strand
CG33307-RA 42..554 17..529 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:10 Download gff for BS16816.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13840838..13841035 332..529 100 <- Minus
2L 13841096..13841374 53..331 100 <- Minus
2L 13841444..13841479 17..52 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:35 Download gff for BS16816.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13840838..13841035 332..529 100 <- Minus
arm_2L 13841096..13841374 53..331 100 <- Minus
arm_2L 13841444..13841479 17..52 100   Minus

BS16816.pep Sequence

Translation from 16 to 528

> BS16816.pep
MLKYIPLLLVAQLLIVAAKPTNPQLLNSDDPVQRELERQAKEETVHLLNS
LFRSQIAYFSEVKAALNPQTKRFQDISLYITRLSQAIDEQELDRKDELWQ
NIFEEFKDSPLLINRQSETGLTDLQYKTLLTGQKLQNISTKFVSDVADYF
WEMAKISGKVVGNGIASQNE*

BS16816.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG33307-PB 170 CG33307-PB 1..170 1..170 851 100 Plus
CG33307-PA 170 CG33307-PA 1..170 1..170 851 100 Plus