Clone Sequence Records
BS16816.3prime Sequence
543 bp (543 high quality bases) assembled on 2007-05-15
> BS16816.3prime
ATGGTCTAGAAAGCTTCTATTCGTTCTGGCTCGCTATCCCATTGCCAACG
ACTTTGCCACTAATCTTGGCCATTTCCCAGAAGTAATCGGCCACATCGCT
CACGAACTTGGTGGATATATTCTGCAGCTTCTGGCCGGTCAGGAGTGTCT
TATATTGCAAGTCGGTGAGTCCTGTCTCGGATTGCCGATTAATCAGCAGT
GGAGAGTCCTTGAACTCTTCGAAGATATTCTGCCACAGCTCATCCTTTCG
GTCCAGTTCCTGCTCATCAATGGCTTGGCTCAGGCGCGTTATATAAAGAC
TGATATCTTGGAATCGCTTGGTCTGGGGATTCAGAGCGGCCTTCACCTCG
GAGAAATAGGCGATTTGTGATCGGAACAACGAGTTCAGCAGGTGGACTGT
CTCCTCCTTGGCCTGTCTCTCCAACTCCCTTTGCACTGGATCATCGGAGT
TTAGGAGTTGTGGATTTGTGGGCTTGGCAGCCACTATTAATAGCTGGGCT
ACTAAAAGTAAAGGAATATATTTCAGCATGTCGACTGATAACT
BS16816.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:26:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33307-PA | 513 | CG33307-RA | 1..513 | 529..17 | 2565 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:15:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33307-RB | 1832 | CG33307-RB | 42..554 | 529..17 | 2565 | 100 | Minus |
CG33307-RA | 586 | CG33307-RA | 42..554 | 529..17 | 2565 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:15:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13841096..13841377 | 215..496 | 1410 | 100 | Plus |
2L | 23513712 | 2L | 13840838..13841037 | 17..216 | 1000 | 100 | Plus |
2L | 23513712 | 2L | 13841444..13841479 | 494..529 | 180 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:15:10 has no hits.
BS16816.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:27:01 Download gff for
BS16816.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33307-PA | 1..513 | 17..529 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:41:46 Download gff for
BS16816.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33307-RA | 32..562 | 9..539 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:20:47 Download gff for
BS16816.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33307-RA | 32..562 | 9..539 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:20:47 Download gff for
BS16816.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13840830..13841035 | 9..214 | 98 | <- | Plus |
2L | 13841096..13841374 | 215..493 | 100 | <- | Plus |
2L | 13841444..13841489 | 494..539 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:41:46 Download gff for
BS16816.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13840830..13841035 | 9..214 | 98 | <- | Plus |
arm_2L | 13841096..13841374 | 215..493 | 100 | <- | Plus |
arm_2L | 13841444..13841489 | 494..539 | 91 | | Plus |
BS16816.5prime Sequence
543 bp (543 high quality bases) assembled on 2007-05-15
> BS16816.5prime
GAAGTTATCAGTCGACATGCTGAAATATATTCCTTTACTTTTAGTAGCCC
AGCTATTAATAGTGGCTGCCAAGCCCACAAATCCACAACTCCTAAACTCC
GATGATCCAGTGCAAAGGGAGTTGGAGAGACAGGCCAAGGAGGAGACAGT
CCACCTGCTGAACTCGTTGTTCCGATCACAAATCGCCTATTTCTCCGAGG
TGAAGGCCGCTCTGAATCCCCAGACCAAGCGATTCCAAGATATCAGTCTT
TATATAACGCGCCTGAGCCAAGCCATTGATGAGCAGGAACTGGACCGAAA
GGATGAGCTGTGGCAGAATATCTTCGAAGAGTTCAAGGACTCTCCACTGC
TGATTAATCGGCAATCCGAGACAGGACTCACCGACTTGCAATATAAGACA
CTCCTGACCGGCCAGAAGCTGCAGAATATATCCACCAAGTTCGTGAGCGA
TGTGGCCGATTACTTCTGGGAAATGGCCAAGATTAGTGGCAAAGTCGTTG
GCAATGGGATAGCGAGCCAGAACGAATAGAAGCTTTCTAGACC
BS16816.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:21:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33307-PA | 513 | CG33307-RA | 1..513 | 17..529 | 2565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:27:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33307-RB | 1832 | CG33307-RB | 42..554 | 17..529 | 2565 | 100 | Plus |
CG33307-RA | 586 | CG33307-RA | 42..554 | 17..529 | 2565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:27:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13841096..13841377 | 331..50 | 1410 | 100 | Minus |
2L | 23513712 | 2L | 13840838..13841037 | 529..330 | 1000 | 100 | Minus |
2L | 23513712 | 2L | 13841444..13841479 | 52..17 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:27:43 has no hits.
BS16816.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:21:08 Download gff for
BS16816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33307-PA | 1..513 | 17..529 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:46:46 Download gff for
BS16816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33307-RA | 32..562 | 7..537 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:21:33 Download gff for
BS16816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33307-RA | 32..562 | 7..537 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:21:33 Download gff for
BS16816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13840830..13841035 | 332..537 | 98 | <- | Minus |
2L | 13841096..13841374 | 53..331 | 100 | <- | Minus |
2L | 13841444..13841489 | 7..52 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:46:46 Download gff for
BS16816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13840830..13841035 | 332..537 | 98 | <- | Minus |
arm_2L | 13841096..13841374 | 53..331 | 100 | <- | Minus |
arm_2L | 13841444..13841489 | 7..52 | 91 | | Minus |
BS16816.complete Sequence
545 bp assembled on 2007-05-07
GenBank Submission: FJ638197
> BS16816.complete
GAAGTTATCAGTCGACATGCTGAAATATATTCCTTTACTTTTAGTAGCCC
AGCTATTAATAGTGGCTGCCAAGCCCACAAATCCACAACTCCTAAACTCC
GATGATCCAGTGCAAAGGGAGTTGGAGAGACAGGCCAAGGAGGAGACAGT
CCACCTGCTGAACTCGTTGTTCCGATCACAAATCGCCTATTTCTCCGAGG
TGAAGGCCGCTCTGAATCCCCAGACCAAGCGATTCCAAGATATCAGTCTT
TATATAACGCGCCTGAGCCAAGCCATTGATGAGCAGGAACTGGACCGAAA
GGATGAGCTGTGGCAGAATATCTTCGAAGAGTTCAAGGACTCTCCACTGC
TGATTAATCGGCAATCCGAGACAGGACTCACCGACTTGCAATATAAGACA
CTCCTGACCGGCCAGAAGCTGCAGAATATATCCACCAAGTTCGTGAGCGA
TGTGGCCGATTACTTCTGGGAAATGGCCAAGATTAGTGGCAAAGTCGTTG
GCAATGGGATAGCGAGCCAGAACGAATAGAAGCTTTCTAGACCAT
BS16816.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:18:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33307-RB | 513 | CG33307-PB | 1..513 | 17..529 | 2565 | 100 | Plus |
CG33307-RA | 513 | CG33307-PA | 1..513 | 17..529 | 2565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:18:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33307-RB | 1832 | CG33307-RB | 42..554 | 17..529 | 2565 | 100 | Plus |
CG33307-RA | 586 | CG33307-RA | 42..554 | 17..529 | 2565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:18:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13841096..13841377 | 331..50 | 1410 | 100 | Minus |
2L | 23513712 | 2L | 13840838..13841037 | 529..330 | 1000 | 100 | Minus |
2L | 23513712 | 2L | 13841444..13841479 | 52..17 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:18:52 has no hits.
BS16816.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:40 Download gff for
BS16816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33307-RA | 1..513 | 17..529 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:53:57 Download gff for
BS16816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33307-RA | 21..551 | 7..537 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:35 Download gff for
BS16816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33307-RA | 42..554 | 17..529 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:40 Download gff for
BS16816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33307-RA | 21..551 | 7..537 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:10 Download gff for
BS16816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33307-RA | 42..554 | 17..529 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:10 Download gff for
BS16816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13840838..13841035 | 332..529 | 100 | <- | Minus |
2L | 13841096..13841374 | 53..331 | 100 | <- | Minus |
2L | 13841444..13841479 | 17..52 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:35 Download gff for
BS16816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13840838..13841035 | 332..529 | 100 | <- | Minus |
arm_2L | 13841096..13841374 | 53..331 | 100 | <- | Minus |
arm_2L | 13841444..13841479 | 17..52 | 100 | | Minus |
BS16816.pep Sequence
Translation from 16 to 528
> BS16816.pep
MLKYIPLLLVAQLLIVAAKPTNPQLLNSDDPVQRELERQAKEETVHLLNS
LFRSQIAYFSEVKAALNPQTKRFQDISLYITRLSQAIDEQELDRKDELWQ
NIFEEFKDSPLLINRQSETGLTDLQYKTLLTGQKLQNISTKFVSDVADYF
WEMAKISGKVVGNGIASQNE*
BS16816.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33307-PB | 170 | CG33307-PB | 1..170 | 1..170 | 851 | 100 | Plus |
CG33307-PA | 170 | CG33307-PA | 1..170 | 1..170 | 851 | 100 | Plus |