Clone Sequence Records
BS16821.complete Sequence
242 bp assembled on 2010-02-09
GenBank Submission: KX800343
> BS16821.complete
GAAGTTATCAGTCGACATGCAGATCAAGTTCCTGTACCTCTTCCTGGCTG
TGATGACCATCTTCATCCTGGGCGCCAAGGAAGCCGATGCCGACTGTCTC
TCTGGAAGATACGGAGGACCCTGCGCCGTCTGGGACAACGAGACCTGTCG
TCGGGTGTGCAAGGAGGAAGGACGATCCAGTGGCCACTGCAGTCCCAGTC
TGAAGTGCTGGTGCGAGGGATGCTAGAAGCTTTCTAGACCAT
BS16821.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:31:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drsl5-RA | 210 | CG10812-PA | 1..210 | 17..226 | 1050 | 100 | Plus |
Drs-RA | 213 | CG10810-PA | 53..212 | 66..225 | 560 | 90 | Plus |
Drsl2-RA | 213 | CG32279-PA | 5..211 | 18..224 | 450 | 81.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:31:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drsl5-RA | 364 | CG10812-RA | 53..264 | 15..226 | 1060 | 100 | Plus |
Drs-RA | 387 | CG10810-RA | 116..275 | 66..225 | 560 | 90 | Plus |
Drsl2-RA | 333 | CG32279-RA | 31..237 | 18..224 | 450 | 81.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:31:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3316833..3317044 | 15..226 | 1060 | 100 | Plus |
3L | 28110227 | 3L | 3369671..3369830 | 66..225 | 560 | 90 | Plus |
3L | 28110227 | 3L | 3314379..3314585 | 18..224 | 450 | 81.2 | Plus |
3L | 28110227 | 3L | 3336146..3336359 | 224..17 | 420 | 80.8 | Minus |
3L | 28110227 | 3L | 3315784..3315842 | 158..216 | 205 | 89.8 | Plus |
3L | 28110227 | 3L | 3335580..3335639 | 225..166 | 195 | 88.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:31:54 has no hits.
BS16821.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:03 Download gff for
BS16821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dro5-RA | 27..236 | 17..226 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:14 Download gff for
BS16821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drsl5-RA | 55..264 | 17..226 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:35 Download gff for
BS16821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dro5-RA | 27..236 | 17..226 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:31:03 Download gff for
BS16821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drsl5-RA | 55..264 | 17..226 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:31:03 Download gff for
BS16821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3316835..3317044 | 17..226 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:14 Download gff for
BS16821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3316835..3317044 | 17..226 | 100 | | Plus |
BS16821.5prime Sequence
240 bp (240 high quality bases) assembled on 2007-05-15
> BS16821.5prime
GAAGTTATCAGTCGACATGCAGATCAAGTTCCTGTACCTCTTCCTGGCTG
TGATGACCATCTTCATCCTGGGCGCCAAGGAAGCCGATGCCGACTGTCTC
TCTGGAAGATACGGAGGACCCTGCGCCGTCTGGGACAACGAGACCTGTCG
TCGGGTGTGCAAGGAGGAAGGACGATCCAGTGGCCACTGCAGTCCCAGTC
TGAAGTGCTGGTGCGAGGGATGCTAGAAGCTTTCTAGACC
BS16821.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:19:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10812-PA | 210 | dro5-RA | 1..210 | 17..226 | 1050 | 100 | Plus |
CG10810-PA | 213 | Drs-RA | 106..212 | 119..225 | 385 | 94.3 | Plus |
CG32268-PA | 219 | dro6-RA | 50..131 | 63..144 | 235 | 91.4 | Plus |
CG32279-PA | 213 | dro2-RA | 165..211 | 178..224 | 185 | 95.7 | Plus |
CG32282-PA | 216 | dro4-RA | 168..206 | 178..216 | 145 | 94.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:59:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drsl5-RA | 364 | CG10812-RA | 53..264 | 15..226 | 1060 | 100 | Plus |
Drs-RA | 387 | CG10810-RA | 116..275 | 66..225 | 560 | 90 | Plus |
Drsl6-RA | 387 | CG32268-RA | 60..273 | 17..224 | 460 | 82.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:59:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3316833..3317044 | 15..226 | 1060 | 100 | Plus |
3L | 28110227 | 3L | 3369671..3369830 | 66..225 | 560 | 90 | Plus |
3L | 28110227 | 3L | 3314379..3314585 | 18..224 | 450 | 81.2 | Plus |
3L | 28110227 | 3L | 3336146..3336359 | 224..17 | 420 | 80.8 | Minus |
3L | 28110227 | 3L | 3315784..3315842 | 158..216 | 205 | 89.8 | Plus |
3L | 28110227 | 3L | 3335580..3335639 | 225..166 | 195 | 88.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:59:23 has no hits.
BS16821.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:19:03 Download gff for
BS16821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10812-PA | 1..210 | 17..226 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:47:48 Download gff for
BS16821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drsl5-RA | 53..270 | 15..234 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:33:30 Download gff for
BS16821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drsl5-RA | 53..270 | 15..234 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:33:30 Download gff for
BS16821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3316833..3317050 | 15..234 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:47:48 Download gff for
BS16821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3316833..3317050 | 15..234 | 98 | | Plus |
BS16821.3prime Sequence
240 bp (240 high quality bases) assembled on 2007-05-15
> BS16821.3prime
ATGGTCTAGAAAGCTTCTAGCATCCCTCGCACCAGCACTTCAGACTGGGA
CTGCAGTGGCCACTGGATCGTCCTTCCTCCTTGCACACCCGACGACAGGT
CTCGTTGTCCCAGACGGCGCAGGGTCCTCCGTATCTTCCAGAGAGACAGT
CGGCATCGGCTTCCTTGGCGCCCAGGATGAAGATGGTCATCACAGCCAGG
AAGAGGTACAGGAACTTGATCTGCATGTCGACTGATAACT
BS16821.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:24:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10812-PA | 210 | dro5-RA | 1..210 | 226..17 | 1050 | 100 | Minus |
CG10810-PA | 213 | Drs-RA | 106..212 | 124..18 | 385 | 94.3 | Minus |
CG32268-PA | 219 | dro6-RA | 50..131 | 180..99 | 235 | 91.4 | Minus |
CG32279-PA | 213 | dro2-RA | 165..211 | 65..19 | 185 | 95.7 | Minus |
CG32282-PA | 216 | dro4-RA | 168..206 | 65..27 | 145 | 94.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:32:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drsl5-RA | 364 | CG10812-RA | 53..264 | 228..17 | 1060 | 100 | Minus |
Drs-RA | 387 | CG10810-RA | 116..275 | 177..18 | 560 | 90 | Minus |
Drsl6-RA | 387 | CG32268-RA | 60..273 | 226..19 | 460 | 82.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:32:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3316833..3317044 | 228..17 | 1060 | 100 | Minus |
3L | 28110227 | 3L | 3369671..3369830 | 177..18 | 560 | 90 | Minus |
3L | 28110227 | 3L | 3314379..3314585 | 225..19 | 450 | 81.2 | Minus |
3L | 28110227 | 3L | 3336146..3336359 | 19..226 | 420 | 80.8 | Plus |
3L | 28110227 | 3L | 3315784..3315842 | 85..27 | 205 | 89.8 | Minus |
3L | 28110227 | 3L | 3335580..3335639 | 18..77 | 195 | 88.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:32:09 has no hits.
BS16821.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:24:19 Download gff for
BS16821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10812-PA | 1..210 | 17..226 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:49:48 Download gff for
BS16821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drsl5-RA | 53..270 | 9..228 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:56 Download gff for
BS16821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drsl5-RA | 53..270 | 9..228 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:56 Download gff for
BS16821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3316833..3317050 | 9..228 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:49:48 Download gff for
BS16821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3316833..3317050 | 9..228 | 98 | | Minus |
BS16821.pep Sequence
Translation from 219 to 236
> BS16821.pep
MLEAF*
Sequence BS16821.pep has no blast hits.