Clone BS16822 Report

Search the DGRC for BS16822

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:168
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptMESK2-RI
Protein status:BS16822.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16822.3prime Sequence

830 bp (827 high quality bases) assembled on 2007-05-15

> BS16822.3prime
ATGGTCTAGAAAGCTTCTAAGAGCTGACCGGCTCGGGCAGTGGGTTCTCT
GTGATGCGTATCTTGTTGCTCTGGGTGCCGTAGTAAAGCGTGCCCGATGT
GTCCGTGGTCACGTAGGCTCGGTTGCCATTACCGGTTCCTGTTCCGTTGC
CGCCGGCACATCCGTTTCCGTTCTCCAGATCCTGGTCGTCCCCGTCGACG
CTGCGACCATCCGCATTATTATTGTCCCCCTGGCCGGCGGTGGTGTTGGA
GTTGCTGCTGGTGCAATTGATGGCCGTCTCCCGAAGGCGATTGCCAACGC
GAAGGCTCAGCTGCCGCTGGCGATCCCGCTCCCTTTCCCGCTCACGATCG
CGCTCCTCCATCGCCTGCTGCTGCTGCTCCCGGAAGTTGGCAAAGAAGAT
GGAGGAGTAGGTGTGGTATTTAGTTCCACAGGGCGAACTCGCTGGCGTGG
ACAGCGGCGTTGCGTAGCCCTCGCCCTGCAAGAAGAGCCGGAAGGCCTCG
GCCAGCTTAGCCGGCTGCTCCTCCAGCACCAAAGCGCAATCGGAAATCTT
CATCCACGATGAGTTTGTAGGATCTAGACGGCCATTGAAGGTCACCGTGT
CGTCGACGTGCGGCGAGAGCGAACCTGTGATATTGATCACCGGCATCTTC
AGCGTGGTGGCCGCCGTTTCGCTGCCCGGAGTACCTGGCGGAGTGCGTGC
CAGATGCAGGTCGTTACGATGGATGTACGCGTTGATCAGCATGGCAAGAT
TGGTCGGATTAACGCCACGCTCGAAGTGCTGCTTGTACATCTGCACCAGG
TCGTGATTGCGCTCCTCCGGATTGCGTCCG

BS16822.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG15669-PJ 1407 MESK2-RJ 594..1407 830..17 4070 100 Minus
CG15669-PI 1458 MESK2-RI 645..1458 830..17 4070 100 Minus
CG15669-PA 1344 MESK2-RA 891..1259 830..462 1845 100 Minus
CG15669-PF 1344 MESK2-RF 891..1259 830..462 1845 100 Minus
CG15669-PD 1098 MESK2-RD 645..1013 830..462 1845 100 Minus
CG15669-PE 1344 MESK2-RE 891..1259 830..462 1845 100 Minus
CG15669-PB 1278 MESK2-RB 891..1258 830..463 1840 100 Minus
CG15669-PK 1230 MESK2-RK 807..1174 830..463 1840 100 Minus
CG15669-PC 1314 MESK2-RC 891..1258 830..463 1840 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
MESK2-RI 2798 CG15669-RI 1077..1891 830..16 4075 100 Minus
MESK2-RJ 2702 CG15669-RJ 981..1795 830..16 4075 100 Minus
MESK2-RE 2619 CG15669-RE 1466..1834 830..462 1845 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21515887..21516334 463..16 2240 100 Minus
2R 25286936 2R 21511686..21511968 830..548 1415 100 Minus
2R 25286936 2R 21512091..21512177 549..463 435 100 Minus
Blast to na_te.dros performed 2015-02-13 06:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2493..2532 272..233 128 80 Minus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 6570..6627 290..233 119 67.2 Minus
TART-C 11124 TART-C TARTC 11124bp 8026..8083 290..233 119 67.2 Minus

BS16822.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:27:05 Download gff for BS16822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15669-PI 645..1458 17..830 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:19:58 Download gff for BS16822.3prime
Subject Subject Range Query Range Percent Splice Strand
MESK2-RJ 981..1803 8..830 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:18:14 Download gff for BS16822.3prime
Subject Subject Range Query Range Percent Splice Strand
MESK2-RJ 981..1803 8..830 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:18:14 Download gff for BS16822.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21511686..21511968 548..830 100 -> Minus
2R 21512093..21512177 463..547 100 -> Minus
2R 21515888..21516342 8..462 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:19:58 Download gff for BS16822.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17399191..17399473 548..830 100 -> Minus
arm_2R 17399598..17399682 463..547 100 -> Minus
arm_2R 17403393..17403847 8..462 99   Minus

BS16822.5prime Sequence

853 bp (828 high quality bases) assembled on 2007-05-15

> BS16822.5prime
GAAGTTATCAGTCGACATGCCGTCAGCTCCAACACACACTGCCGAGGAGG
CACATCTGCTGGGCACCATGCCCGTTGATCCCATGGATGACATCGAACTG
CGCTCCGTGCAGCTGCAATTCCCCAATGCCCGCGGCTCCATCCTGGAGGC
CTGCGAACAGCGACGCGTGCCCACAGACAAGGGCGATGTCCACGTGGCCA
TACAGGGCGATACGGCCAAGCCGGCCATTATCACCTACCACGATTTGGGC
CTCAACTACGCCACCAGCTTTGCTGGCTTCTTCAATTTTCCAGTGATGCG
AGGTCTGCTGGAGAACTTCTGTGTTTACCACGTGACTGCTCCTGGCCAGG
AGGAGGGTGCACCCACTTTGCCAGAGGATTACGTCTATCCGACCATGGAT
GATCTGGCCGCCCAGCTGCTTTTCGTGCTATCCCACTTTGGCCTAAAGTC
GGTGATTGGTTTCGGCGTTGGTGCCGGGGCGAATATTCTGGCCCGTTTCG
CTCACGCCCATCCGGACAAGGTGGGCGCCCTGTGCCTGATCAATTGCGTG
TCCACGCAGTCGGGCTGGATCGAGTGGGGCTACCAGAGCTTCAATGCCCG
CTTCTTGCGCACCAAGGGCATGACACAGGGCGTGATCGATTATCTGATGT
GGCACCACTTCGGACGCAATCCGGAGGAGCGCAATCACGACCTGGTGCAG
ATGTACAAGCAGCACTTCGAGCGTGGCGTTAATCCGACCAATCTTGCCAT
GCTGATCAACGCGTACATCCATCGTAACGACCTGCATCTGGCACGCACTC
CGCCAGGTACTCCGGGCAGCGAAACGGCGGCCACCACGCTGAAGATGCCG
GTG

BS16822.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:21:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG15669-PB 1278 MESK2-RB 247..1083 17..853 4185 100 Plus
CG15669-PA 1344 MESK2-RA 247..1083 17..853 4185 100 Plus
CG15669-PF 1344 MESK2-RF 247..1083 17..853 4185 100 Plus
CG15669-PD 1098 MESK2-RD 1..837 17..853 4185 100 Plus
CG15669-PE 1344 MESK2-RE 247..1083 17..853 4185 100 Plus
CG15669-PI 1458 MESK2-RI 1..837 17..853 4185 100 Plus
CG15669-PC 1314 MESK2-RC 247..1083 17..853 4185 100 Plus
CG15669-PK 1230 MESK2-RK 209..999 63..853 3955 100 Plus
CG15669-PJ 1407 MESK2-RJ 1..786 68..853 3930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:01
Subject Length Description Subject Range Query Range Score Percent Strand
MESK2-RC 2193 CG15669-RC 849..1685 17..853 4185 100 Plus
MESK2-RI 2798 CG15669-RI 433..1269 17..853 4185 100 Plus
MESK2-RE 2619 CG15669-RE 822..1658 17..853 4185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21511404..21511878 379..853 2375 100 Plus
2R 25286936 2R 21510866..21511060 63..257 975 100 Plus
2R 25286936 2R 21511123..21511243 258..378 605 100 Plus
2R 25286936 2R 21510155..21510201 17..63 235 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:51:59 has no hits.

BS16822.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:21:13 Download gff for BS16822.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15669-PA 240..1083 9..853 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:10:33 Download gff for BS16822.5prime
Subject Subject Range Query Range Percent Splice Strand
MESK2-RE 815..1658 9..853 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:26 Download gff for BS16822.5prime
Subject Subject Range Query Range Percent Splice Strand
MESK2-RE 815..1658 9..853 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:26 Download gff for BS16822.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21510148..21510201 9..63 92 -> Plus
2R 21510867..21511060 64..257 100 -> Plus
2R 21511123..21511243 258..378 100 -> Plus
2R 21511404..21511878 379..853 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:10:33 Download gff for BS16822.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17397653..17397706 9..63 92 -> Plus
arm_2R 17398372..17398565 64..257 100 -> Plus
arm_2R 17398628..17398748 258..378 100 -> Plus
arm_2R 17398909..17399383 379..853 100   Plus

BS16822.complete Sequence

1490 bp assembled on 2007-05-07

GenBank Submission: FJ638198

> BS16822.complete
GAAGTTATCAGTCGACATGCCGTCAGCTCCAACACACACTGCCGAGGAGG
CACATCTGCTGGGCACCATGCCCGTTGATCCCATGGATGACATCGAACTG
CGCTCCGTGCAGCTGCAATTCCCCAATGCCCGCGGCTCCATCCTGGAGGC
CTGCGAACAGCGACGCGTGCCCACAGACAAGGGCGATGTCCACGTGGCCA
TACAGGGCGATACGGCCAAGCCGGCCATTATCACCTACCACGATTTGGGC
CTCAACTACGCCACCAGCTTTGCTGGCTTCTTCAATTTTCCAGTGATGCG
AGGTCTGCTGGAGAACTTCTGTGTTTACCACGTGACTGCTCCTGGCCAGG
AGGAGGGTGCACCCACTTTGCCAGAGGATTACGTCTATCCGACCATGGAT
GATCTGGCCGCCCAGCTGCTTTTCGTGCTATCCCACTTTGGCCTAAAGTC
GGTGATTGGTTTCGGCGTTGGTGCCGGGGCGAATATTCTGGCCCGTTTCG
CTCACGCCCATCCGGACAAGGTGGGCGCCCTGTGCCTGATCAATTGCGTG
TCCACGCAGTCGGGCTGGATCGAGTGGGGCTACCAGAGCTTCAATGCCCG
CTTCTTGCGCACCAAGGGCATGACACAGGGCGTGATCGATTATCTGATGT
GGCACCACTTCGGACGCAATCCGGAGGAGCGCAATCACGACCTGGTGCAG
ATGTACAAGCAGCACTTCGAGCGTGGCGTTAATCCGACCAATCTTGCCAT
GCTGATCAACGCGTACATCCATCGTAACGACCTGCATCTGGCACGCACTC
CGCCAGGTACTCCGGGCAGCGAAACGGCGGCCACCACGCTGAAGATGCCG
GTGATCAATATCACAGGTTCGCTCTCGCCGCACGTCGACGACACGGTGAC
CTTCAATGGCCGTCTAGATCCTACAAACTCATCGTGGATGAAGATTTCCG
ATTGCGCTTTGGTGCTGGAGGAGCAGCCGGCTAAGCTGGCCGAGGCCTTC
CGGCTCTTCTTGCAGGGCGAGGGCTACGCAACGCCGCTGTCCACGCCAGC
GAGTTCGCCCTGTGGAACTAAATACCACACCTACTCCTCCATCTTCTTTG
CCAACTTCCGGGAGCAGCAGCAGCAGGCGATGGAGGAGCGCGATCGTGAG
CGGGAAAGGGAGCGGGATCGCCAGCGGCAGCTGAGCCTTCGCGTTGGCAA
TCGCCTTCGGGAGACGGCCATCAATTGCACCAGCAGCAACTCCAACACCA
CCGCCGGCCAGGGGGACAATAATAATGCGGATGGTCGCAGCGTCGACGGG
GACGACCAGGATCTGGAGAACGGAAACGGATGTGCCGGCGGCAACGGAAC
AGGAACCGGTAATGGCAACCGAGCCTACGTGACCACGGACACATCGGGCA
CGCTTTACTACGGCACCCAGAGCAACAAGATACGCATCACAGAGAACCCA
CTGCCCGAGCCGGTCAGCTCTTAGAAGCTTTCTAGACCAT

BS16822.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:25:23
Subject Length Description Subject Range Query Range Score Percent Strand
MESK2-RI 1458 CG15669-PI 1..1458 17..1474 7290 100 Plus
MESK2-RJ 1407 CG15669-PJ 1..1407 68..1474 7035 100 Plus
MESK2-RE 1344 CG15669-PE 247..1259 17..1029 5065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:25:24
Subject Length Description Subject Range Query Range Score Percent Strand
MESK2-RI 2798 CG15669-RI 433..1891 17..1475 7295 100 Plus
MESK2-RJ 2702 CG15669-RJ 383..1795 63..1475 7065 100 Plus
MESK2-RE 2619 CG15669-RE 822..1834 17..1029 5065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21511404..21511968 379..943 2825 100 Plus
2R 25286936 2R 21515887..21516334 1028..1475 2240 100 Plus
2R 25286936 2R 21510866..21511060 63..257 975 100 Plus
2R 25286936 2R 21511123..21511243 258..378 605 100 Plus
2R 25286936 2R 21512091..21512177 942..1028 435 100 Plus
2R 25286936 2R 21510155..21510201 17..63 235 100 Plus
Blast to na_te.dros performed 2014-11-27 16:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2493..2532 1219..1258 128 80 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 6570..6627 1201..1258 119 67.2 Plus
TART-C 11124 TART-C TARTC 11124bp 8026..8083 1201..1258 119 67.2 Plus

BS16822.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:41 Download gff for BS16822.complete
Subject Subject Range Query Range Percent Splice Strand
MESK2-RI 1..1458 17..1474 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:44 Download gff for BS16822.complete
Subject Subject Range Query Range Percent Splice Strand
MESK2-RD 3123..3577 1029..1483 99   Plus
MESK2-RD 425..1445 9..1028 99 -> Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:34 Download gff for BS16822.complete
Subject Subject Range Query Range Percent Splice Strand
MESK2-RI 433..1890 17..1474 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:42 Download gff for BS16822.complete
Subject Subject Range Query Range Percent Splice Strand
MESK2-RD 425..1445 9..1028 99 -> Plus
MESK2-RD 3123..3577 1029..1483 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:07 Download gff for BS16822.complete
Subject Subject Range Query Range Percent Splice Strand
MESK2-RI 433..1890 17..1474 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:07 Download gff for BS16822.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21510155..21510201 17..63 100 -> Plus
2R 21510867..21511060 64..257 100 -> Plus
2R 21511123..21511243 258..378 100 -> Plus
2R 21511404..21511968 379..943 100 -> Plus
2R 21512093..21512177 944..1028 100 -> Plus
2R 21515888..21516333 1029..1474 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:34 Download gff for BS16822.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17397660..17397706 17..63 100 -> Plus
arm_2R 17398372..17398565 64..257 100 -> Plus
arm_2R 17398628..17398748 258..378 100 -> Plus
arm_2R 17398909..17399473 379..943 100 -> Plus
arm_2R 17399598..17399682 944..1028 100 -> Plus
arm_2R 17403393..17403838 1029..1474 100   Plus

BS16822.pep Sequence

Translation from 16 to 1473

> BS16822.pep
MPSAPTHTAEEAHLLGTMPVDPMDDIELRSVQLQFPNARGSILEACEQRR
VPTDKGDVHVAIQGDTAKPAIITYHDLGLNYATSFAGFFNFPVMRGLLEN
FCVYHVTAPGQEEGAPTLPEDYVYPTMDDLAAQLLFVLSHFGLKSVIGFG
VGAGANILARFAHAHPDKVGALCLINCVSTQSGWIEWGYQSFNARFLRTK
GMTQGVIDYLMWHHFGRNPEERNHDLVQMYKQHFERGVNPTNLAMLINAY
IHRNDLHLARTPPGTPGSETAATTLKMPVINITGSLSPHVDDTVTFNGRL
DPTNSSWMKISDCALVLEEQPAKLAEAFRLFLQGEGYATPLSTPASSPCG
TKYHTYSSIFFANFREQQQQAMEERDRERERERDRQRQLSLRVGNRLRET
AINCTSSNSNTTAGQGDNNNADGRSVDGDDQDLENGNGCAGGNGTGTGNG
NRAYVTTDTSGTLYYGTQSNKIRITENPLPEPVSS*

BS16822.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
MESK2-PI 485 CG15669-PI 1..485 1..485 2584 100 Plus
MESK2-PJ 468 CG15669-PJ 1..468 18..485 2494 100 Plus
MESK2-PD 365 CG15669-PD 1..338 1..338 1806 100 Plus
MESK2-PE 447 CG15669-PE 83..420 1..338 1806 100 Plus
MESK2-PF 447 CG15669-PF 83..420 1..338 1806 100 Plus