Clone Sequence Records
BS16822.3prime Sequence
830 bp (827 high quality bases) assembled on 2007-05-15
> BS16822.3prime
ATGGTCTAGAAAGCTTCTAAGAGCTGACCGGCTCGGGCAGTGGGTTCTCT
GTGATGCGTATCTTGTTGCTCTGGGTGCCGTAGTAAAGCGTGCCCGATGT
GTCCGTGGTCACGTAGGCTCGGTTGCCATTACCGGTTCCTGTTCCGTTGC
CGCCGGCACATCCGTTTCCGTTCTCCAGATCCTGGTCGTCCCCGTCGACG
CTGCGACCATCCGCATTATTATTGTCCCCCTGGCCGGCGGTGGTGTTGGA
GTTGCTGCTGGTGCAATTGATGGCCGTCTCCCGAAGGCGATTGCCAACGC
GAAGGCTCAGCTGCCGCTGGCGATCCCGCTCCCTTTCCCGCTCACGATCG
CGCTCCTCCATCGCCTGCTGCTGCTGCTCCCGGAAGTTGGCAAAGAAGAT
GGAGGAGTAGGTGTGGTATTTAGTTCCACAGGGCGAACTCGCTGGCGTGG
ACAGCGGCGTTGCGTAGCCCTCGCCCTGCAAGAAGAGCCGGAAGGCCTCG
GCCAGCTTAGCCGGCTGCTCCTCCAGCACCAAAGCGCAATCGGAAATCTT
CATCCACGATGAGTTTGTAGGATCTAGACGGCCATTGAAGGTCACCGTGT
CGTCGACGTGCGGCGAGAGCGAACCTGTGATATTGATCACCGGCATCTTC
AGCGTGGTGGCCGCCGTTTCGCTGCCCGGAGTACCTGGCGGAGTGCGTGC
CAGATGCAGGTCGTTACGATGGATGTACGCGTTGATCAGCATGGCAAGAT
TGGTCGGATTAACGCCACGCTCGAAGTGCTGCTTGTACATCTGCACCAGG
TCGTGATTGCGCTCCTCCGGATTGCGTCCG
BS16822.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:27:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15669-PJ | 1407 | MESK2-RJ | 594..1407 | 830..17 | 4070 | 100 | Minus |
CG15669-PI | 1458 | MESK2-RI | 645..1458 | 830..17 | 4070 | 100 | Minus |
CG15669-PA | 1344 | MESK2-RA | 891..1259 | 830..462 | 1845 | 100 | Minus |
CG15669-PF | 1344 | MESK2-RF | 891..1259 | 830..462 | 1845 | 100 | Minus |
CG15669-PD | 1098 | MESK2-RD | 645..1013 | 830..462 | 1845 | 100 | Minus |
CG15669-PE | 1344 | MESK2-RE | 891..1259 | 830..462 | 1845 | 100 | Minus |
CG15669-PB | 1278 | MESK2-RB | 891..1258 | 830..463 | 1840 | 100 | Minus |
CG15669-PK | 1230 | MESK2-RK | 807..1174 | 830..463 | 1840 | 100 | Minus |
CG15669-PC | 1314 | MESK2-RC | 891..1258 | 830..463 | 1840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:38:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MESK2-RI | 2798 | CG15669-RI | 1077..1891 | 830..16 | 4075 | 100 | Minus |
MESK2-RJ | 2702 | CG15669-RJ | 981..1795 | 830..16 | 4075 | 100 | Minus |
MESK2-RE | 2619 | CG15669-RE | 1466..1834 | 830..462 | 1845 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:38:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21515887..21516334 | 463..16 | 2240 | 100 | Minus |
2R | 25286936 | 2R | 21511686..21511968 | 830..548 | 1415 | 100 | Minus |
2R | 25286936 | 2R | 21512091..21512177 | 549..463 | 435 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 06:38:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2493..2532 | 272..233 | 128 | 80 | Minus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6570..6627 | 290..233 | 119 | 67.2 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 8026..8083 | 290..233 | 119 | 67.2 | Minus |
BS16822.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:27:05 Download gff for
BS16822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15669-PI | 645..1458 | 17..830 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:19:58 Download gff for
BS16822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RJ | 981..1803 | 8..830 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:18:14 Download gff for
BS16822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RJ | 981..1803 | 8..830 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:18:14 Download gff for
BS16822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21511686..21511968 | 548..830 | 100 | -> | Minus |
2R | 21512093..21512177 | 463..547 | 100 | -> | Minus |
2R | 21515888..21516342 | 8..462 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:19:58 Download gff for
BS16822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17399191..17399473 | 548..830 | 100 | -> | Minus |
arm_2R | 17399598..17399682 | 463..547 | 100 | -> | Minus |
arm_2R | 17403393..17403847 | 8..462 | 99 | | Minus |
BS16822.5prime Sequence
853 bp (828 high quality bases) assembled on 2007-05-15
> BS16822.5prime
GAAGTTATCAGTCGACATGCCGTCAGCTCCAACACACACTGCCGAGGAGG
CACATCTGCTGGGCACCATGCCCGTTGATCCCATGGATGACATCGAACTG
CGCTCCGTGCAGCTGCAATTCCCCAATGCCCGCGGCTCCATCCTGGAGGC
CTGCGAACAGCGACGCGTGCCCACAGACAAGGGCGATGTCCACGTGGCCA
TACAGGGCGATACGGCCAAGCCGGCCATTATCACCTACCACGATTTGGGC
CTCAACTACGCCACCAGCTTTGCTGGCTTCTTCAATTTTCCAGTGATGCG
AGGTCTGCTGGAGAACTTCTGTGTTTACCACGTGACTGCTCCTGGCCAGG
AGGAGGGTGCACCCACTTTGCCAGAGGATTACGTCTATCCGACCATGGAT
GATCTGGCCGCCCAGCTGCTTTTCGTGCTATCCCACTTTGGCCTAAAGTC
GGTGATTGGTTTCGGCGTTGGTGCCGGGGCGAATATTCTGGCCCGTTTCG
CTCACGCCCATCCGGACAAGGTGGGCGCCCTGTGCCTGATCAATTGCGTG
TCCACGCAGTCGGGCTGGATCGAGTGGGGCTACCAGAGCTTCAATGCCCG
CTTCTTGCGCACCAAGGGCATGACACAGGGCGTGATCGATTATCTGATGT
GGCACCACTTCGGACGCAATCCGGAGGAGCGCAATCACGACCTGGTGCAG
ATGTACAAGCAGCACTTCGAGCGTGGCGTTAATCCGACCAATCTTGCCAT
GCTGATCAACGCGTACATCCATCGTAACGACCTGCATCTGGCACGCACTC
CGCCAGGTACTCCGGGCAGCGAAACGGCGGCCACCACGCTGAAGATGCCG
GTG
BS16822.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:21:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15669-PB | 1278 | MESK2-RB | 247..1083 | 17..853 | 4185 | 100 | Plus |
CG15669-PA | 1344 | MESK2-RA | 247..1083 | 17..853 | 4185 | 100 | Plus |
CG15669-PF | 1344 | MESK2-RF | 247..1083 | 17..853 | 4185 | 100 | Plus |
CG15669-PD | 1098 | MESK2-RD | 1..837 | 17..853 | 4185 | 100 | Plus |
CG15669-PE | 1344 | MESK2-RE | 247..1083 | 17..853 | 4185 | 100 | Plus |
CG15669-PI | 1458 | MESK2-RI | 1..837 | 17..853 | 4185 | 100 | Plus |
CG15669-PC | 1314 | MESK2-RC | 247..1083 | 17..853 | 4185 | 100 | Plus |
CG15669-PK | 1230 | MESK2-RK | 209..999 | 63..853 | 3955 | 100 | Plus |
CG15669-PJ | 1407 | MESK2-RJ | 1..786 | 68..853 | 3930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MESK2-RC | 2193 | CG15669-RC | 849..1685 | 17..853 | 4185 | 100 | Plus |
MESK2-RI | 2798 | CG15669-RI | 433..1269 | 17..853 | 4185 | 100 | Plus |
MESK2-RE | 2619 | CG15669-RE | 822..1658 | 17..853 | 4185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:51:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21511404..21511878 | 379..853 | 2375 | 100 | Plus |
2R | 25286936 | 2R | 21510866..21511060 | 63..257 | 975 | 100 | Plus |
2R | 25286936 | 2R | 21511123..21511243 | 258..378 | 605 | 100 | Plus |
2R | 25286936 | 2R | 21510155..21510201 | 17..63 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:51:59 has no hits.
BS16822.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:21:13 Download gff for
BS16822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15669-PA | 240..1083 | 9..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:10:33 Download gff for
BS16822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RE | 815..1658 | 9..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:26 Download gff for
BS16822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RE | 815..1658 | 9..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:26 Download gff for
BS16822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21510148..21510201 | 9..63 | 92 | -> | Plus |
2R | 21510867..21511060 | 64..257 | 100 | -> | Plus |
2R | 21511123..21511243 | 258..378 | 100 | -> | Plus |
2R | 21511404..21511878 | 379..853 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:10:33 Download gff for
BS16822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17397653..17397706 | 9..63 | 92 | -> | Plus |
arm_2R | 17398372..17398565 | 64..257 | 100 | -> | Plus |
arm_2R | 17398628..17398748 | 258..378 | 100 | -> | Plus |
arm_2R | 17398909..17399383 | 379..853 | 100 | | Plus |
BS16822.complete Sequence
1490 bp assembled on 2007-05-07
GenBank Submission: FJ638198
> BS16822.complete
GAAGTTATCAGTCGACATGCCGTCAGCTCCAACACACACTGCCGAGGAGG
CACATCTGCTGGGCACCATGCCCGTTGATCCCATGGATGACATCGAACTG
CGCTCCGTGCAGCTGCAATTCCCCAATGCCCGCGGCTCCATCCTGGAGGC
CTGCGAACAGCGACGCGTGCCCACAGACAAGGGCGATGTCCACGTGGCCA
TACAGGGCGATACGGCCAAGCCGGCCATTATCACCTACCACGATTTGGGC
CTCAACTACGCCACCAGCTTTGCTGGCTTCTTCAATTTTCCAGTGATGCG
AGGTCTGCTGGAGAACTTCTGTGTTTACCACGTGACTGCTCCTGGCCAGG
AGGAGGGTGCACCCACTTTGCCAGAGGATTACGTCTATCCGACCATGGAT
GATCTGGCCGCCCAGCTGCTTTTCGTGCTATCCCACTTTGGCCTAAAGTC
GGTGATTGGTTTCGGCGTTGGTGCCGGGGCGAATATTCTGGCCCGTTTCG
CTCACGCCCATCCGGACAAGGTGGGCGCCCTGTGCCTGATCAATTGCGTG
TCCACGCAGTCGGGCTGGATCGAGTGGGGCTACCAGAGCTTCAATGCCCG
CTTCTTGCGCACCAAGGGCATGACACAGGGCGTGATCGATTATCTGATGT
GGCACCACTTCGGACGCAATCCGGAGGAGCGCAATCACGACCTGGTGCAG
ATGTACAAGCAGCACTTCGAGCGTGGCGTTAATCCGACCAATCTTGCCAT
GCTGATCAACGCGTACATCCATCGTAACGACCTGCATCTGGCACGCACTC
CGCCAGGTACTCCGGGCAGCGAAACGGCGGCCACCACGCTGAAGATGCCG
GTGATCAATATCACAGGTTCGCTCTCGCCGCACGTCGACGACACGGTGAC
CTTCAATGGCCGTCTAGATCCTACAAACTCATCGTGGATGAAGATTTCCG
ATTGCGCTTTGGTGCTGGAGGAGCAGCCGGCTAAGCTGGCCGAGGCCTTC
CGGCTCTTCTTGCAGGGCGAGGGCTACGCAACGCCGCTGTCCACGCCAGC
GAGTTCGCCCTGTGGAACTAAATACCACACCTACTCCTCCATCTTCTTTG
CCAACTTCCGGGAGCAGCAGCAGCAGGCGATGGAGGAGCGCGATCGTGAG
CGGGAAAGGGAGCGGGATCGCCAGCGGCAGCTGAGCCTTCGCGTTGGCAA
TCGCCTTCGGGAGACGGCCATCAATTGCACCAGCAGCAACTCCAACACCA
CCGCCGGCCAGGGGGACAATAATAATGCGGATGGTCGCAGCGTCGACGGG
GACGACCAGGATCTGGAGAACGGAAACGGATGTGCCGGCGGCAACGGAAC
AGGAACCGGTAATGGCAACCGAGCCTACGTGACCACGGACACATCGGGCA
CGCTTTACTACGGCACCCAGAGCAACAAGATACGCATCACAGAGAACCCA
CTGCCCGAGCCGGTCAGCTCTTAGAAGCTTTCTAGACCAT
BS16822.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:25:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MESK2-RI | 1458 | CG15669-PI | 1..1458 | 17..1474 | 7290 | 100 | Plus |
MESK2-RJ | 1407 | CG15669-PJ | 1..1407 | 68..1474 | 7035 | 100 | Plus |
MESK2-RE | 1344 | CG15669-PE | 247..1259 | 17..1029 | 5065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:25:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MESK2-RI | 2798 | CG15669-RI | 433..1891 | 17..1475 | 7295 | 100 | Plus |
MESK2-RJ | 2702 | CG15669-RJ | 383..1795 | 63..1475 | 7065 | 100 | Plus |
MESK2-RE | 2619 | CG15669-RE | 822..1834 | 17..1029 | 5065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:25:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21511404..21511968 | 379..943 | 2825 | 100 | Plus |
2R | 25286936 | 2R | 21515887..21516334 | 1028..1475 | 2240 | 100 | Plus |
2R | 25286936 | 2R | 21510866..21511060 | 63..257 | 975 | 100 | Plus |
2R | 25286936 | 2R | 21511123..21511243 | 258..378 | 605 | 100 | Plus |
2R | 25286936 | 2R | 21512091..21512177 | 942..1028 | 435 | 100 | Plus |
2R | 25286936 | 2R | 21510155..21510201 | 17..63 | 235 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:25:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2493..2532 | 1219..1258 | 128 | 80 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6570..6627 | 1201..1258 | 119 | 67.2 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 8026..8083 | 1201..1258 | 119 | 67.2 | Plus |
BS16822.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:41 Download gff for
BS16822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RI | 1..1458 | 17..1474 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:44 Download gff for
BS16822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RD | 3123..3577 | 1029..1483 | 99 | | Plus |
MESK2-RD | 425..1445 | 9..1028 | 99 | -> | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:34 Download gff for
BS16822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RI | 433..1890 | 17..1474 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:42 Download gff for
BS16822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RD | 425..1445 | 9..1028 | 99 | -> | Plus |
MESK2-RD | 3123..3577 | 1029..1483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:07 Download gff for
BS16822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RI | 433..1890 | 17..1474 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:07 Download gff for
BS16822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21510155..21510201 | 17..63 | 100 | -> | Plus |
2R | 21510867..21511060 | 64..257 | 100 | -> | Plus |
2R | 21511123..21511243 | 258..378 | 100 | -> | Plus |
2R | 21511404..21511968 | 379..943 | 100 | -> | Plus |
2R | 21512093..21512177 | 944..1028 | 100 | -> | Plus |
2R | 21515888..21516333 | 1029..1474 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:34 Download gff for
BS16822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17397660..17397706 | 17..63 | 100 | -> | Plus |
arm_2R | 17398372..17398565 | 64..257 | 100 | -> | Plus |
arm_2R | 17398628..17398748 | 258..378 | 100 | -> | Plus |
arm_2R | 17398909..17399473 | 379..943 | 100 | -> | Plus |
arm_2R | 17399598..17399682 | 944..1028 | 100 | -> | Plus |
arm_2R | 17403393..17403838 | 1029..1474 | 100 | | Plus |
BS16822.pep Sequence
Translation from 16 to 1473
> BS16822.pep
MPSAPTHTAEEAHLLGTMPVDPMDDIELRSVQLQFPNARGSILEACEQRR
VPTDKGDVHVAIQGDTAKPAIITYHDLGLNYATSFAGFFNFPVMRGLLEN
FCVYHVTAPGQEEGAPTLPEDYVYPTMDDLAAQLLFVLSHFGLKSVIGFG
VGAGANILARFAHAHPDKVGALCLINCVSTQSGWIEWGYQSFNARFLRTK
GMTQGVIDYLMWHHFGRNPEERNHDLVQMYKQHFERGVNPTNLAMLINAY
IHRNDLHLARTPPGTPGSETAATTLKMPVINITGSLSPHVDDTVTFNGRL
DPTNSSWMKISDCALVLEEQPAKLAEAFRLFLQGEGYATPLSTPASSPCG
TKYHTYSSIFFANFREQQQQAMEERDRERERERDRQRQLSLRVGNRLRET
AINCTSSNSNTTAGQGDNNNADGRSVDGDDQDLENGNGCAGGNGTGTGNG
NRAYVTTDTSGTLYYGTQSNKIRITENPLPEPVSS*
BS16822.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MESK2-PI | 485 | CG15669-PI | 1..485 | 1..485 | 2584 | 100 | Plus |
MESK2-PJ | 468 | CG15669-PJ | 1..468 | 18..485 | 2494 | 100 | Plus |
MESK2-PD | 365 | CG15669-PD | 1..338 | 1..338 | 1806 | 100 | Plus |
MESK2-PE | 447 | CG15669-PE | 83..420 | 1..338 | 1806 | 100 | Plus |
MESK2-PF | 447 | CG15669-PF | 83..420 | 1..338 | 1806 | 100 | Plus |