Clone Sequence Records
BS16823.complete Sequence
1148 bp assembled on 2009-12-08
GenBank Submission: KX805932
> BS16823.complete
GAAGTTATCAGTCGACATGGAAATGGAAAAGTCTGGCAAATTTTCAGATT
ACCTCTTCGCCAAAATGGGTCCCCCCACCTCAACTGAGCTGCCTCCGAAG
ACCACGGAATGCAGCGATGCCCCCGTGGAGTTGACCGGTTACCGCAGGTG
GCTCTCCGAGAATCTAATGCTCCTGGTCACCCTTTCCGGAGTTCTCCTTG
GTGTAATACTAGGACTCTCCTTACGGCCGCTTAATTTACATGGGGACTCC
ATCATGCTGATTTCCTATCCTGGCGAACTGTTTATGCGCGTACTCAAGCT
GATGATTTTGCCGCTAGTTATATCGAGCCTTATTGCCGGATCGGCCAGCC
TTAACGCCAAAATGAACGGCAAGATAGCGCTGCGCACGTTGGTTTACTTT
GCCAGCACTTCGTTCTTTAACGCTGCACTGGGAATCGCTCTCGTTCTGCT
CATCCATCCTGGAAATCCGGATCTGCACAATGCGGACGATCGATCTACAG
ATCGGCGGGCAGTTAACCTTCTAGATAGTCTTTTGGATTTGGGCAGGAAC
GTATTCCCGGACAACCTGTTTCAGGCCTCCATTCAGCAGGCGCACACCGT
CTACTTGCCCAAGCCGAGTATCCTGCACGTCTTCAACGAAACGATGAATG
ACACCTTGGCATCCGGATCGGAGGCCCAACGCTTGTCTGAAGACCTTACG
GAGGATGTGGTGCTGGTGAGGGACATCCAGTACCGCAGTGGAACCAACAC
CCTGGGCATCGTCTTCTTCTGCCTGGTGTTTGGTACTTTTTTGGGAACCA
TCGGCCAGAAGGGTCAGGTCGTGGTTGACTTCTTTGCCGCCATTTTTGAG
CGCCGCTGCCCTGCCCATTACATTCCGCTGCATGAACGAGAAACTCAAGG
TGGATCCGCGGATCACGCGATTTGTCCTTCCAATCGGATGCAACATCAAC
ATGGACGGAACGGCCCTATATATCGCAGTGGCATCGATATTCATTGCCCA
GATGAGCGGCATGGTTCTGGGATTTGGAGAGCTCCTTACGGTCCTTCTGA
CCTCCACGGCTGCCTCCATGAGCTCGGCCAGCGTTCCGAGTGCTGCCCTG
GTACTCCTTCTCGTGGTGCTGACCGCCATTGAAAGCTTTCTAGACCAT
BS16823.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:48:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eaat2-RC | 1740 | CG3159-PC | 1..834 | 17..850 | 4170 | 100 | Plus |
| Eaat2-RD | 1692 | CG3159-PD | 1..786 | 65..850 | 3930 | 100 | Plus |
| Eaat2-RA | 1692 | CG3159-PA | 1..786 | 65..850 | 3930 | 100 | Plus |
| Eaat2-RC | 1740 | CG3159-PC | 1101..1382 | 851..1132 | 1410 | 100 | Plus |
| Eaat2-RD | 1692 | CG3159-PD | 1053..1334 | 851..1132 | 1410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eaat2-RC | 3398 | CG3159-RC | 797..1630 | 17..850 | 4170 | 100 | Plus |
| Eaat2-RD | 3169 | CG3159-RD | 597..1401 | 46..850 | 4025 | 100 | Plus |
| Eaat2-RA | 3057 | CG3159-RA | 485..1289 | 46..850 | 4025 | 100 | Plus |
| Eaat2-RC | 3398 | CG3159-RC | 1897..2178 | 851..1132 | 1410 | 100 | Plus |
| Eaat2-RD | 3169 | CG3159-RD | 1668..1949 | 851..1132 | 1410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 740356..740692 | 547..211 | 1685 | 100 | Minus |
| 2L | 23513712 | 2L | 739711..740017 | 850..544 | 1535 | 100 | Minus |
| 2L | 23513712 | 2L | 738556..738839 | 1132..849 | 1420 | 100 | Minus |
| 2L | 23513712 | 2L | 740799..740995 | 213..17 | 985 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:48:04 has no hits.
BS16823.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:28 Download gff for
BS16823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eaat2-RB | 784..1898 | 17..1131 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:58:09 Download gff for
BS16823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eaat2-RC | 797..1630 | 17..850 | 100 | -- | Plus |
| Eaat2-RC | 1897..2177 | 851..1131 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:22:07 Download gff for
BS16823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eaat2-RB | 784..1898 | 17..1131 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:06 Download gff for
BS16823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eaat2-RC | 1897..2177 | 851..1131 | 100 | | Plus |
| Eaat2-RC | 797..1630 | 17..850 | 100 | -- | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:06 Download gff for
BS16823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 738557..738837 | 851..1131 | 100 | <- | Minus |
| 2L | 739711..740014 | 547..850 | 100 | <- | Minus |
| 2L | 740357..740690 | 213..546 | 100 | <- | Minus |
| 2L | 740800..740995 | 17..212 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:58:09 Download gff for
BS16823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 740357..740690 | 213..546 | 100 | <- | Minus |
| arm_2L | 740800..740995 | 17..212 | 100 | | Minus |
| arm_2L | 738557..738837 | 851..1131 | 100 | <- | Minus |
| arm_2L | 739711..740014 | 547..850 | 100 | <- | Minus |
BS16823.3prime Sequence
748 bp (747 high quality bases) assembled on 2007-05-15
> BS16823.3prime
ATGGTCTAGAAAGCTTTCCCTGGCGGTCAGCACCACGAGAAGGAGTACCA
GGGCAGCACTCGGAACGCTGGCCGAGCTCATGGAGGCAGCCGTGGAGGTC
AGAAGGACCGTAAGGAGCTCTCCAAATCCCAGAACCATGCCGCTCATCTG
GGCAATGAATATCGATGCCACTGCGATATATAGGGCCGTTCCGTCCATGT
TGATGTTGCATCCGATTGGAAGGACAAATCGCGTGATCCGCGGATCCACC
TTGAGTTTCTCGTTCATGCAGCGGAATGTAATGGGCAGGGCAGCGGCGCT
CAAAAATGGCGGCAAAGAAGTCAACCACGACCTGACCCTTCTGGCCGATG
GTTCCCAAAAAAGTACCAAACACCAGGCAGAAGAAGACGATGCCCAGGGT
GTTGGTTCCACTGCGGTACTGGATGTCCCTCACCAGCACCACATCCTCCG
TAAGGTCTTCAGACAAGCGTTGGGCCTCCGATCCGGATGCCAAGGTGTCA
TTCATCGTTTCGTTGAAGACGTGCAGGATACTCGGCTTGGGCAAGTAGAC
GGTGTGCGCCTGCTGAATGGAGGCCTGAAACAGGTTGTCCGGGAATACGT
TCCTGCCCAAATCCAAAAGACTATCTAGAAGGTTAACTGCCCGCCGATCT
GTAGATCGATCGTCCGCATTGTGCAGATCCGGATTTCCAGGATGGATGAG
CAGAACGAGAGCGATTCCCAGTGCAGCGTTAAAGAACGAAGTGCTGGC
BS16823.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:27:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3159-PB | 1116 | Eaat2-RB | 385..1112 | 748..21 | 3640 | 100 | Minus |
| CG3159-PA | 1692 | Eaat2-RA | 337..786 | 748..299 | 2250 | 100 | Minus |
| CG3159-PA | 1692 | Eaat2-RA | 1053..1330 | 298..21 | 1390 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:17:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eaat2-RD | 3169 | CG3159-RD | 952..1401 | 748..299 | 2250 | 100 | Minus |
| Eaat2-RC | 3398 | CG3159-RC | 1181..1630 | 748..299 | 2250 | 100 | Minus |
| Eaat2-RA | 3057 | CG3159-RA | 840..1289 | 748..299 | 2250 | 100 | Minus |
| Eaat2-RD | 3169 | CG3159-RD | 1668..1945 | 298..21 | 1390 | 100 | Minus |
| Eaat2-RC | 3398 | CG3159-RC | 1897..2174 | 298..21 | 1390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:17:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 739711..740017 | 299..605 | 1535 | 100 | Plus |
| 2L | 23513712 | 2L | 738560..738839 | 21..300 | 1400 | 100 | Plus |
| 2L | 23513712 | 2L | 740356..740502 | 602..748 | 735 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:17:26 has no hits.
BS16823.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:27:14 Download gff for
BS16823.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3159-PB | 385..1116 | 17..748 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:33:33 Download gff for
BS16823.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eaat2-RA | 840..1289 | 299..748 | 100 | -- | Minus |
| Eaat2-RA | 1556..1840 | 13..298 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:05 Download gff for
BS16823.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eaat2-RA | 840..1289 | 299..748 | 100 | -- | Minus |
| Eaat2-RA | 1556..1840 | 13..298 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:05 Download gff for
BS16823.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 738553..738837 | 13..298 | 98 | <- | Plus |
| 2L | 739711..740014 | 299..602 | 100 | <- | Plus |
| 2L | 740357..740502 | 603..748 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:33:33 Download gff for
BS16823.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 738553..738837 | 13..298 | 98 | <- | Plus |
| arm_2L | 739711..740014 | 299..602 | 100 | <- | Plus |
| arm_2L | 740357..740502 | 603..748 | 100 | | Plus |
BS16823.5prime Sequence
867 bp (770 high quality bases) assembled on 2007-05-15
> BS16823.5prime
GAAGTTATCATTCGACATGGAAATGGAAAAGTCTGGCAAATTTTCAGATT
ACCTCTTCGCCAAAATGGGTCCCCCCACCTCAACTGAGCTGCCTCCGAAG
ACCACGGAATGCAGCGATGCCCCCGTGGAGTTGACCGGTTACCGCAGGTG
GCTCTCCGAGAATCTAATGCTCCTGGTCACCCTTTCCGGAGTTCTCCTTG
GTGTAATACTAGGACTCTCCTTACGGCCGCTTAATTTACATGGGGACTCC
ATCATGCTGATTTCCTATCCTGGCGAACTGTTTATGCGCGTACTCAAGCT
GATGATTTTGCCGCTAGTTATATCGAGCCTTATTGCCGGATCGGCCAGCC
TTAACGCCAAAATGAACGGCAAGATAGCGCTGCGCACGTTGGTTTACTTT
GCCAGCACTTCGTTCTTTAACGCTGCACTGGGAATCGCTCTCGTTCTGCT
CATCCATCCTGGAAATCCGGATCTGCACAATGCGGACGATCGATCTACAG
ATCGGCGGGCAGTTAACCTTCTAGATAGTCTTTTGGATTTGGGCAGGAAC
GTATTCCCGGACAACCTGTTTCAGGCCTCCATTCAGCAGGCGCACACCGT
CTACTTGCCCAAGCCGAGTATCCTGCACGTCTTCAACGAAACGATGAATG
ACACCTTGGCATCCGGATCGGAGGCCCAACGCTTGTCTGAAGACCTTACG
GAGGATGTGGTGCTGGTGAGGGACATCCAGTACCGCAGTGGAACCAACAC
CCTGGGCATCGTCTTCTTCTGCCTGGTGTTTGGTACTTTTTTGGGAACCA
TCGGCCAGAAGGGTCAGGTCGTGGTTGACTTCTTTGCCGCCATTTTTGAC
CGCCGCTGCCCTGCCCA
BS16823.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:21:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3159-PB | 1116 | Eaat2-RB | 1..851 | 17..867 | 4230 | 99.8 | Plus |
| CG3159-PA | 1692 | Eaat2-RA | 1..785 | 65..849 | 3925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:02:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eaat2-RC | 3398 | CG3159-RC | 797..1629 | 17..849 | 4165 | 100 | Plus |
| Eaat2-RD | 3169 | CG3159-RD | 597..1400 | 46..849 | 4020 | 100 | Plus |
| Eaat2-RA | 3057 | CG3159-RA | 485..1288 | 46..849 | 4020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:02:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 740356..740692 | 547..211 | 1685 | 100 | Minus |
| 2L | 23513712 | 2L | 739712..740017 | 849..544 | 1530 | 100 | Minus |
| 2L | 23513712 | 2L | 740799..740995 | 213..17 | 985 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:02:45 has no hits.
BS16823.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:21:29 Download gff for
BS16823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3159-PB | 1..850 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:29:02 Download gff for
BS16823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eaat2-RC | 790..1630 | 11..849 | 99 | -> | Plus |
| Eaat2-RC | 1896..1912 | 850..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:52:48 Download gff for
BS16823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eaat2-RC | 790..1630 | 11..849 | 99 | -> | Plus |
| Eaat2-RC | 1896..1912 | 850..866 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:52:48 Download gff for
BS16823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 738822..738837 | 851..866 | 100 | <- | Minus |
| 2L | 739711..740014 | 547..850 | 99 | <- | Minus |
| 2L | 740357..740690 | 213..546 | 100 | <- | Minus |
| 2L | 740800..741002 | 11..212 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:29:02 Download gff for
BS16823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 738822..738837 | 851..866 | 100 | <- | Minus |
| arm_2L | 739711..740014 | 547..850 | 99 | <- | Minus |
| arm_2L | 740357..740690 | 213..546 | 100 | <- | Minus |
| arm_2L | 740800..741002 | 11..212 | 99 | | Minus |
BS16823.pep Sequence
Translation from 16 to 1131
> BS16823.pep
MEMEKSGKFSDYLFAKMGPPTSTELPPKTTECSDAPVELTGYRRWLSENL
MLLVTLSGVLLGVILGLSLRPLNLHGDSIMLISYPGELFMRVLKLMILPL
VISSLIAGSASLNAKMNGKIALRTLVYFASTSFFNAALGIALVLLIHPGN
PDLHNADDRSTDRRAVNLLDSLLDLGRNVFPDNLFQASIQQAHTVYLPKP
SILHVFNETMNDTLASGSEAQRLSEDLTEDVVLVRDIQYRSGTNTLGIVF
FCLVFGTFLGTIGQKGQVVVDFFAAIFERRCPAHYIPLHERETQGGSADH
AICPSNRMQHQHGRNGPIYRSGIDIHCPDERHGSGIWRAPYGPSDLHGCL
HELGQRSECCPGTPSRGADRH*
BS16823.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:57:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eaat2-PC | 579 | CG3159-PC | 1..278 | 1..278 | 1400 | 100 | Plus |
| Eaat2-PD | 563 | CG3159-PD | 1..262 | 17..278 | 1318 | 100 | Plus |
| Eaat2-PA | 563 | CG3159-PA | 1..262 | 17..278 | 1318 | 100 | Plus |
| Eaat1-PD | 479 | CG3747-PD | 11..229 | 42..278 | 301 | 31.7 | Plus |
| Eaat1-PC | 479 | CG3747-PC | 11..229 | 42..278 | 301 | 31.7 | Plus |
