Clone BS16827 Report

Search the DGRC for BS16827

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:168
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG8449-RA
Protein status:BS16827.pep: full length peptide match
Sequenced Size:1997

Clone Sequence Records

BS16827.3prime Sequence

774 bp (772 high quality bases) assembled on 2007-05-15

> BS16827.3prime
ATGGTCTAGAAAGCTTTCAACTCGATTCGTTTCGATGCCGTTGCTGAGGC
TCCGCAGCTGGCAATCCGTTTTGCACCACCGCGTTTCCAGGTTTCTCATC
GCTCGTTATCGTGGACAGCTCGATTTCACGCAGTTCCCCGAGGAGCCGTC
GCATCGAGCTGTGCATAAAGGCGTTCTCAGGCATCTGATAGCCACCAGTC
GCAGAGAGAGCAGCCGGTGCGTTAGCGGGAGTGGAGGAAGCCGTTGGCTT
TGGCGGTTTGCTGACAGTGTTTAGCTGCTTCTGCTCGTTGGCCTCCAGAG
CCTGGTCGATGGGCGCCGATCGCTGGTGCAGCGGGAACATGAATTTAACG
TCCAGAAAGCTGCATAGCTCTTCAATCCCGTCCAGTGTCCGACCGAGTTC
TTCGCTACCATTCGCCTGCTTTCCCACATGATGGCGCACAGTGCTCAGGT
AGCTCTGCAACTTGCTTCGCGCTATCTTGATTACAGTTTGGGCATTCTTC
AGCTCCAATCGGAGTAGCTCTGGACTATTCTCCAAGTATCCATCCATTGC
AACTCGATGGGTATCTTGCAATTTGGCCAGAGCAGAAGAATCCGCCGCAT
TGCGCTCCTGCATGAAGGTGATCTGCCGATCGATCTGGCTACCACTAGTG
GCCATCGAAGAGTTTTCTGAATTGGTGCGCGGGCGTTGTCCCGCAGGAGG
GGGCACATCCTTGTCCGCGGAACTGTTGGCAAAGGACACACACGTGAAGG
CGTTTGGCGGATACTCAAACTGCT

BS16827.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG8449-PA 1965 CG8449-RA 1208..1965 774..17 3790 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:58:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG8449-RA 2318 CG8449-RA 1378..2135 774..17 3790 100 Minus
Su(var)3-7-RA 5051 CG8599-RA 4333..4842 17..526 2550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13269320..13269829 17..526 2550 100 Plus
3R 32079331 3R 13270078..13270325 527..774 1240 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:58:41 has no hits.

BS16827.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:24:41 Download gff for BS16827.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8449-PA 1208..1965 17..774 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:47:24 Download gff for BS16827.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8449-RA 1378..2135 17..774 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:49 Download gff for BS16827.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8449-RA 1378..2135 17..774 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:49 Download gff for BS16827.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13269320..13269829 17..526 100 <- Plus
3R 13270078..13270325 527..774 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:47:24 Download gff for BS16827.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9095042..9095551 17..526 100 <- Plus
arm_3R 9095800..9096047 527..774 100   Plus

BS16827.5prime Sequence

840 bp (823 high quality bases) assembled on 2007-05-15

> BS16827.5prime
GAAGTTATCAGTCGACATGACTGTTTGGGGAATAGAAGCCATCACACTGA
ACGGATCGTCGGCAAGGGAAAGTTTGGAGCACCTTCCGGGAAACGGTGCA
ATTCGGGTGATACCAGAGGCGGGAGCCATGAACTCCGTGGAGCGCTACCG
TCAGGAGTGGCAGGTGCTGCTTGAAAACCTCGATGCGGACCCGGAAAGTC
TCCGGCAGTCGGCATTTGCCGGCGATCTCAAGATGTCCAAATTCCGCAGC
GTTCACTGGGCCCTCCTACTGCGCGTCCTGACGTCGGAGCACCGCAGTTG
GACTAGCCAGCGACTTCAGCAGCGAGTTAGGTACGACAAGTTCCGGGCAG
ACTACGTCCGCAATCCGCACCAACTGGCCGTGGACTGCAACGATGATCCG
CTGTCGCAGTCGACGCAAAGCGTGTGGAATCAGTACTTTAGCGACCAGGA
CCTATTCGCCGTCATCCGGCAGGATGTGGTGCGCACTTTCCCGGGTGTGG
ACTTCTTCCGTAAGCCATTGGTGCAGAATGCAATGGTCAACATACTGTTC
TACTACGCCAGGGAGCATCCGTATATGTGCTACCGGCAGGGCATGCACGA
GATCCTGGCTCCCATTATATTCGTTGTCTACAGCGATCACCAGTCCCTGC
TTCACTTCAGCGAACTGGCCAAAACGGATATTAATCCCACACTGCTGGAC
GTGCTGGATCCCGCCTATCTGGAAGCGGATACCTACTCTTTGTTCTCCCG
CCTCATGGCCTCCGTGGAGTCGTACTATCGCGTCTCGAATCTGGTCTCCA
CACCCGGTGGCCACATCGAACAGCGAGCCGAGAGCCCCGG

BS16827.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8449-PA 1965 CG8449-RA 1..824 17..840 4120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG8449-RA 2318 CG8449-RA 171..994 17..840 4120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:25:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13271123..13271841 735..17 3595 100 Minus
3R 32079331 3R 13270969..13271065 832..736 485 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:25:58 has no hits.

BS16827.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:19:21 Download gff for BS16827.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8449-PA 1..824 17..840 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:30:32 Download gff for BS16827.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8449-RA 167..994 10..840 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:02:51 Download gff for BS16827.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8449-RA 167..994 10..840 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:02:51 Download gff for BS16827.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13270969..13271065 736..832 100 <- Minus
3R 13271123..13271843 11..735 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:30:32 Download gff for BS16827.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9096691..9096787 736..832 100 <- Minus
arm_3R 9096845..9097565 11..735 99 <- Minus

BS16827.complete Sequence

1997 bp assembled on 2008-08-15

GenBank Submission: KX806215

> BS16827.complete
GAAGTTATCAGTCGACATGACTGTTTGGGGAATAGAAGCCATCACACTGA
ACGGATCGTCGGCAAGGGAAAGTTTGGAGCACCTTCCGGGAAACGGTGCA
ATTCGGGTGATACCAGAGGCGGGAGCCATGAACTCCGTGGAGCGCTACCG
TCAGGAGTGGCAGGTGCTGCTTGAAAACCTCGATGCGGACCCGGAAAGTC
TCCGGCAGTCGGCATTTGCCGGCGATCTCAAGATGTCCAAATTCCGCAGC
GTTCACTGGGCCCTCCTACTGCGCGTCCTGACGTCGGAGCACCGCAGTTG
GACTAGCCAGCGACTTCAGCAGCGAGTTAGGTACGACAAGTTCCGGGCAG
ACTACGTCCGCAATCCGCACCAACTGGCCGTGGACTGCAACGATGATCCG
CTGTCGCAGTCGACGCAAAGCGTGTGGAATCAGTACTTTAGCGACCAGGA
CCTATTCGCCGTCATCCGGCAGGATGTGGTGCGCACTTTCCCGGGTGTGG
ACTTCTTCCGTAAGCCATTGGTGCAGAATGCAATGGTCAACATACTGTTC
TACTACGCCAGGGAGCATCCGTATATGTGCTACCGGCAGGGCATGCACGA
GATCCTGGCTCCCATTATATTCGTTGTCTACAGCGATCACCAGTCCCTGC
TTCACTTCAGCGAACTGGCCAAAACGGATATTAATCCCACACTGCTGGAC
GTGCTGGATCCCGCCTATCTGGAAGCGGATACCTACTCTTTGTTCTCCCG
CCTCATGGCCTCCGTGGAGTCGTACTATCGCGTCTCGAATCTGGTCTCCA
CACCCGGTGGCCACATCGAACAGCGAGCCGAGAGCCCCGGGGACAATGAG
ACGTCGACCGAGGCGGAGGTTATCGGCCAGCTGAACTTCATACGGGACAA
AATACTCGCCAAGCAGGACCAGCACTTGCACCACTATCTCCAAAAGATGG
AAATCCCACTGCACATATTCGGCATTCGATGGCTAAGACTTCTCTTTGGA
CGGGAGTTTATGCTGCTGGACCTGTTGCTACTCTGGGATGCCATCTTCGC
AGATAGCGACCGCTTCGACCTGCCCAACTACATTCTAGTGGCAATGTTGG
TGCACATCCGTGATAAACTGCTTCTTAGTGACTACACCACATCGTTGACA
TATCTAATGCGCTACCCAAACAATGTTGATGTCCATCTGGTGCTGAGACA
TGCCCTATTCATGCTCAATCCCAAGCAGTTTGAGTATCCGCCAAACGCCT
TCACGTGTGTGTCCTTTGCCAACAGTTCCGCGGACAAGGATGTGCCCCCT
CCTGCGGGACAACGCCCGCGCACCAATTCAGAAAACTCTTCGATGGCCAC
TAGTGGTAGCCAGATCGATCGGCAGATCACCTTCATGCAGGAGCGCAATG
CGGCGGATTCTTCTGCTCTGGCCAAATTGCAAGATACCCATCGAGTTGCA
ATGGATGGATACTTGGAGAATAGTCCAGAGCTACTCCGATTGGAGCTGAA
GAATGCCCAAACTGTAATCAAGATAGCGCGAAGCAAGTTGCAGAGCTACC
TGAGCACTGTGCGCCATCATGTGGGAAAGCAGGCGAATGGTAGCGAAGAA
CTCGGTCGGACACTGGACGGGATTGAAGAGCTATGCAGCTTTCTGGACGT
TAAATTCATGTTCCCGCTGCACCAGCGATCGGCGCCCATCGACCAGGCTC
TGGAGGCCAACGAGCAGAAGCAGCTAAACACTGTCAGCAAACCGCCAAAG
CCAACGGCTTCCTCCACTCCCGCTAACGCACCGGCTGCTCTCTCTGCGAC
TGGTGGCTATCAGATGCCTGAGAACGCCTTTATGCACAGCTCGATGCGAC
GGCTCCTCGGGGAACTGCGTGAAATCGAGCTGTCCACGATAACGAGCGAT
GAGAAACCTGGAAACGCGGTGGTGCAAAACGGATTGCCAGCTGCGGAGCC
TCAGCAACGGCATCGAAACGAATCGAGTTGAAAGCTTTCTAGACCAT

BS16827.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG8449-RA 1965 CG8449-PA 1..1965 17..1981 9825 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8449-RA 2318 CG8449-RA 171..2135 17..1981 9825 100 Plus
Su(var)3-7-RA 5051 CG8599-RA 4333..4842 1981..1472 2550 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13271123..13271841 735..17 3595 100 Minus
3R 32079331 3R 13269320..13269829 1981..1472 2550 100 Minus
3R 32079331 3R 13270078..13270430 1471..1119 1765 100 Minus
3R 32079331 3R 13270767..13270911 975..831 725 100 Minus
3R 32079331 3R 13270492..13270634 1118..976 715 100 Minus
3R 32079331 3R 13270969..13271065 832..736 485 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:37:11 has no hits.

BS16827.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:25:23 Download gff for BS16827.complete
Subject Subject Range Query Range Percent Splice Strand
CG8449-RA 182..2150 10..1981 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:56 Download gff for BS16827.complete
Subject Subject Range Query Range Percent Splice Strand
CG8449-RA 171..2134 17..1980 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:17 Download gff for BS16827.complete
Subject Subject Range Query Range Percent Splice Strand
CG8449-RA 186..2149 17..1980 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:36 Download gff for BS16827.complete
Subject Subject Range Query Range Percent Splice Strand
CG8449-RA 171..2134 17..1980 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:36 Download gff for BS16827.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13269321..13269829 1472..1980 100 <- Minus
3R 13270078..13270430 1119..1471 100 <- Minus
3R 13270492..13270634 976..1118 100 <- Minus
3R 13270767..13270909 833..975 100 <- Minus
3R 13270969..13271065 736..832 100 <- Minus
3R 13271123..13271841 17..735 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:56 Download gff for BS16827.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9095043..9095551 1472..1980 100 <- Minus
arm_3R 9095800..9096152 1119..1471 100 <- Minus
arm_3R 9096214..9096356 976..1118 100 <- Minus
arm_3R 9096489..9096631 833..975 100 <- Minus
arm_3R 9096691..9096787 736..832 100 <- Minus
arm_3R 9096845..9097563 17..735 100   Minus

BS16827.pep Sequence

Translation from 16 to 1980

> BS16827.pep
MTVWGIEAITLNGSSARESLEHLPGNGAIRVIPEAGAMNSVERYRQEWQV
LLENLDADPESLRQSAFAGDLKMSKFRSVHWALLLRVLTSEHRSWTSQRL
QQRVRYDKFRADYVRNPHQLAVDCNDDPLSQSTQSVWNQYFSDQDLFAVI
RQDVVRTFPGVDFFRKPLVQNAMVNILFYYAREHPYMCYRQGMHEILAPI
IFVVYSDHQSLLHFSELAKTDINPTLLDVLDPAYLEADTYSLFSRLMASV
ESYYRVSNLVSTPGGHIEQRAESPGDNETSTEAEVIGQLNFIRDKILAKQ
DQHLHHYLQKMEIPLHIFGIRWLRLLFGREFMLLDLLLLWDAIFADSDRF
DLPNYILVAMLVHIRDKLLLSDYTTSLTYLMRYPNNVDVHLVLRHALFML
NPKQFEYPPNAFTCVSFANSSADKDVPPPAGQRPRTNSENSSMATSGSQI
DRQITFMQERNAADSSALAKLQDTHRVAMDGYLENSPELLRLELKNAQTV
IKIARSKLQSYLSTVRHHVGKQANGSEELGRTLDGIEELCSFLDVKFMFP
LHQRSAPIDQALEANEQKQLNTVSKPPKPTASSTPANAPAALSATGGYQM
PENAFMHSSMRRLLGELREIELSTITSDEKPGNAVVQNGLPAAEPQQRHR
NESS*

BS16827.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:35:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8449-PA 654 CG8449-PA 1..654 1..654 3380 100 Plus
GAPsec-PA 403 CG5978-PA 23..399 58..396 283 25.3 Plus
CG5745-PA 546 CG5745-PA 194..509 17..382 243 24.3 Plus