Clone Sequence Records
BS16827.3prime Sequence
774 bp (772 high quality bases) assembled on 2007-05-15
> BS16827.3prime
ATGGTCTAGAAAGCTTTCAACTCGATTCGTTTCGATGCCGTTGCTGAGGC
TCCGCAGCTGGCAATCCGTTTTGCACCACCGCGTTTCCAGGTTTCTCATC
GCTCGTTATCGTGGACAGCTCGATTTCACGCAGTTCCCCGAGGAGCCGTC
GCATCGAGCTGTGCATAAAGGCGTTCTCAGGCATCTGATAGCCACCAGTC
GCAGAGAGAGCAGCCGGTGCGTTAGCGGGAGTGGAGGAAGCCGTTGGCTT
TGGCGGTTTGCTGACAGTGTTTAGCTGCTTCTGCTCGTTGGCCTCCAGAG
CCTGGTCGATGGGCGCCGATCGCTGGTGCAGCGGGAACATGAATTTAACG
TCCAGAAAGCTGCATAGCTCTTCAATCCCGTCCAGTGTCCGACCGAGTTC
TTCGCTACCATTCGCCTGCTTTCCCACATGATGGCGCACAGTGCTCAGGT
AGCTCTGCAACTTGCTTCGCGCTATCTTGATTACAGTTTGGGCATTCTTC
AGCTCCAATCGGAGTAGCTCTGGACTATTCTCCAAGTATCCATCCATTGC
AACTCGATGGGTATCTTGCAATTTGGCCAGAGCAGAAGAATCCGCCGCAT
TGCGCTCCTGCATGAAGGTGATCTGCCGATCGATCTGGCTACCACTAGTG
GCCATCGAAGAGTTTTCTGAATTGGTGCGCGGGCGTTGTCCCGCAGGAGG
GGGCACATCCTTGTCCGCGGAACTGTTGGCAAAGGACACACACGTGAAGG
CGTTTGGCGGATACTCAAACTGCT
BS16827.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:24:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8449-PA | 1965 | CG8449-RA | 1208..1965 | 774..17 | 3790 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:58:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8449-RA | 2318 | CG8449-RA | 1378..2135 | 774..17 | 3790 | 100 | Minus |
Su(var)3-7-RA | 5051 | CG8599-RA | 4333..4842 | 17..526 | 2550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:58:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13269320..13269829 | 17..526 | 2550 | 100 | Plus |
3R | 32079331 | 3R | 13270078..13270325 | 527..774 | 1240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:58:41 has no hits.
BS16827.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:24:41 Download gff for
BS16827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8449-PA | 1208..1965 | 17..774 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:47:24 Download gff for
BS16827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8449-RA | 1378..2135 | 17..774 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:49 Download gff for
BS16827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8449-RA | 1378..2135 | 17..774 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:49 Download gff for
BS16827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13269320..13269829 | 17..526 | 100 | <- | Plus |
3R | 13270078..13270325 | 527..774 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:47:24 Download gff for
BS16827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9095042..9095551 | 17..526 | 100 | <- | Plus |
arm_3R | 9095800..9096047 | 527..774 | 100 | | Plus |
BS16827.5prime Sequence
840 bp (823 high quality bases) assembled on 2007-05-15
> BS16827.5prime
GAAGTTATCAGTCGACATGACTGTTTGGGGAATAGAAGCCATCACACTGA
ACGGATCGTCGGCAAGGGAAAGTTTGGAGCACCTTCCGGGAAACGGTGCA
ATTCGGGTGATACCAGAGGCGGGAGCCATGAACTCCGTGGAGCGCTACCG
TCAGGAGTGGCAGGTGCTGCTTGAAAACCTCGATGCGGACCCGGAAAGTC
TCCGGCAGTCGGCATTTGCCGGCGATCTCAAGATGTCCAAATTCCGCAGC
GTTCACTGGGCCCTCCTACTGCGCGTCCTGACGTCGGAGCACCGCAGTTG
GACTAGCCAGCGACTTCAGCAGCGAGTTAGGTACGACAAGTTCCGGGCAG
ACTACGTCCGCAATCCGCACCAACTGGCCGTGGACTGCAACGATGATCCG
CTGTCGCAGTCGACGCAAAGCGTGTGGAATCAGTACTTTAGCGACCAGGA
CCTATTCGCCGTCATCCGGCAGGATGTGGTGCGCACTTTCCCGGGTGTGG
ACTTCTTCCGTAAGCCATTGGTGCAGAATGCAATGGTCAACATACTGTTC
TACTACGCCAGGGAGCATCCGTATATGTGCTACCGGCAGGGCATGCACGA
GATCCTGGCTCCCATTATATTCGTTGTCTACAGCGATCACCAGTCCCTGC
TTCACTTCAGCGAACTGGCCAAAACGGATATTAATCCCACACTGCTGGAC
GTGCTGGATCCCGCCTATCTGGAAGCGGATACCTACTCTTTGTTCTCCCG
CCTCATGGCCTCCGTGGAGTCGTACTATCGCGTCTCGAATCTGGTCTCCA
CACCCGGTGGCCACATCGAACAGCGAGCCGAGAGCCCCGG
BS16827.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:19:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8449-PA | 1965 | CG8449-RA | 1..824 | 17..840 | 4120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:26:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8449-RA | 2318 | CG8449-RA | 171..994 | 17..840 | 4120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:25:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13271123..13271841 | 735..17 | 3595 | 100 | Minus |
3R | 32079331 | 3R | 13270969..13271065 | 832..736 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:25:58 has no hits.
BS16827.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:19:21 Download gff for
BS16827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8449-PA | 1..824 | 17..840 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:30:32 Download gff for
BS16827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8449-RA | 167..994 | 10..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:02:51 Download gff for
BS16827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8449-RA | 167..994 | 10..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:02:51 Download gff for
BS16827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13270969..13271065 | 736..832 | 100 | <- | Minus |
3R | 13271123..13271843 | 11..735 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:30:32 Download gff for
BS16827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9096691..9096787 | 736..832 | 100 | <- | Minus |
arm_3R | 9096845..9097565 | 11..735 | 99 | <- | Minus |
BS16827.complete Sequence
1997 bp assembled on 2008-08-15
GenBank Submission: KX806215
> BS16827.complete
GAAGTTATCAGTCGACATGACTGTTTGGGGAATAGAAGCCATCACACTGA
ACGGATCGTCGGCAAGGGAAAGTTTGGAGCACCTTCCGGGAAACGGTGCA
ATTCGGGTGATACCAGAGGCGGGAGCCATGAACTCCGTGGAGCGCTACCG
TCAGGAGTGGCAGGTGCTGCTTGAAAACCTCGATGCGGACCCGGAAAGTC
TCCGGCAGTCGGCATTTGCCGGCGATCTCAAGATGTCCAAATTCCGCAGC
GTTCACTGGGCCCTCCTACTGCGCGTCCTGACGTCGGAGCACCGCAGTTG
GACTAGCCAGCGACTTCAGCAGCGAGTTAGGTACGACAAGTTCCGGGCAG
ACTACGTCCGCAATCCGCACCAACTGGCCGTGGACTGCAACGATGATCCG
CTGTCGCAGTCGACGCAAAGCGTGTGGAATCAGTACTTTAGCGACCAGGA
CCTATTCGCCGTCATCCGGCAGGATGTGGTGCGCACTTTCCCGGGTGTGG
ACTTCTTCCGTAAGCCATTGGTGCAGAATGCAATGGTCAACATACTGTTC
TACTACGCCAGGGAGCATCCGTATATGTGCTACCGGCAGGGCATGCACGA
GATCCTGGCTCCCATTATATTCGTTGTCTACAGCGATCACCAGTCCCTGC
TTCACTTCAGCGAACTGGCCAAAACGGATATTAATCCCACACTGCTGGAC
GTGCTGGATCCCGCCTATCTGGAAGCGGATACCTACTCTTTGTTCTCCCG
CCTCATGGCCTCCGTGGAGTCGTACTATCGCGTCTCGAATCTGGTCTCCA
CACCCGGTGGCCACATCGAACAGCGAGCCGAGAGCCCCGGGGACAATGAG
ACGTCGACCGAGGCGGAGGTTATCGGCCAGCTGAACTTCATACGGGACAA
AATACTCGCCAAGCAGGACCAGCACTTGCACCACTATCTCCAAAAGATGG
AAATCCCACTGCACATATTCGGCATTCGATGGCTAAGACTTCTCTTTGGA
CGGGAGTTTATGCTGCTGGACCTGTTGCTACTCTGGGATGCCATCTTCGC
AGATAGCGACCGCTTCGACCTGCCCAACTACATTCTAGTGGCAATGTTGG
TGCACATCCGTGATAAACTGCTTCTTAGTGACTACACCACATCGTTGACA
TATCTAATGCGCTACCCAAACAATGTTGATGTCCATCTGGTGCTGAGACA
TGCCCTATTCATGCTCAATCCCAAGCAGTTTGAGTATCCGCCAAACGCCT
TCACGTGTGTGTCCTTTGCCAACAGTTCCGCGGACAAGGATGTGCCCCCT
CCTGCGGGACAACGCCCGCGCACCAATTCAGAAAACTCTTCGATGGCCAC
TAGTGGTAGCCAGATCGATCGGCAGATCACCTTCATGCAGGAGCGCAATG
CGGCGGATTCTTCTGCTCTGGCCAAATTGCAAGATACCCATCGAGTTGCA
ATGGATGGATACTTGGAGAATAGTCCAGAGCTACTCCGATTGGAGCTGAA
GAATGCCCAAACTGTAATCAAGATAGCGCGAAGCAAGTTGCAGAGCTACC
TGAGCACTGTGCGCCATCATGTGGGAAAGCAGGCGAATGGTAGCGAAGAA
CTCGGTCGGACACTGGACGGGATTGAAGAGCTATGCAGCTTTCTGGACGT
TAAATTCATGTTCCCGCTGCACCAGCGATCGGCGCCCATCGACCAGGCTC
TGGAGGCCAACGAGCAGAAGCAGCTAAACACTGTCAGCAAACCGCCAAAG
CCAACGGCTTCCTCCACTCCCGCTAACGCACCGGCTGCTCTCTCTGCGAC
TGGTGGCTATCAGATGCCTGAGAACGCCTTTATGCACAGCTCGATGCGAC
GGCTCCTCGGGGAACTGCGTGAAATCGAGCTGTCCACGATAACGAGCGAT
GAGAAACCTGGAAACGCGGTGGTGCAAAACGGATTGCCAGCTGCGGAGCC
TCAGCAACGGCATCGAAACGAATCGAGTTGAAAGCTTTCTAGACCAT
BS16827.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8449-RA | 1965 | CG8449-PA | 1..1965 | 17..1981 | 9825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8449-RA | 2318 | CG8449-RA | 171..2135 | 17..1981 | 9825 | 100 | Plus |
Su(var)3-7-RA | 5051 | CG8599-RA | 4333..4842 | 1981..1472 | 2550 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13271123..13271841 | 735..17 | 3595 | 100 | Minus |
3R | 32079331 | 3R | 13269320..13269829 | 1981..1472 | 2550 | 100 | Minus |
3R | 32079331 | 3R | 13270078..13270430 | 1471..1119 | 1765 | 100 | Minus |
3R | 32079331 | 3R | 13270767..13270911 | 975..831 | 725 | 100 | Minus |
3R | 32079331 | 3R | 13270492..13270634 | 1118..976 | 715 | 100 | Minus |
3R | 32079331 | 3R | 13270969..13271065 | 832..736 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:37:11 has no hits.
BS16827.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:25:23 Download gff for
BS16827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8449-RA | 182..2150 | 10..1981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:56 Download gff for
BS16827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8449-RA | 171..2134 | 17..1980 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:17 Download gff for
BS16827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8449-RA | 186..2149 | 17..1980 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:36 Download gff for
BS16827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8449-RA | 171..2134 | 17..1980 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:36 Download gff for
BS16827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13269321..13269829 | 1472..1980 | 100 | <- | Minus |
3R | 13270078..13270430 | 1119..1471 | 100 | <- | Minus |
3R | 13270492..13270634 | 976..1118 | 100 | <- | Minus |
3R | 13270767..13270909 | 833..975 | 100 | <- | Minus |
3R | 13270969..13271065 | 736..832 | 100 | <- | Minus |
3R | 13271123..13271841 | 17..735 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:56 Download gff for
BS16827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9095043..9095551 | 1472..1980 | 100 | <- | Minus |
arm_3R | 9095800..9096152 | 1119..1471 | 100 | <- | Minus |
arm_3R | 9096214..9096356 | 976..1118 | 100 | <- | Minus |
arm_3R | 9096489..9096631 | 833..975 | 100 | <- | Minus |
arm_3R | 9096691..9096787 | 736..832 | 100 | <- | Minus |
arm_3R | 9096845..9097563 | 17..735 | 100 | | Minus |
BS16827.pep Sequence
Translation from 16 to 1980
> BS16827.pep
MTVWGIEAITLNGSSARESLEHLPGNGAIRVIPEAGAMNSVERYRQEWQV
LLENLDADPESLRQSAFAGDLKMSKFRSVHWALLLRVLTSEHRSWTSQRL
QQRVRYDKFRADYVRNPHQLAVDCNDDPLSQSTQSVWNQYFSDQDLFAVI
RQDVVRTFPGVDFFRKPLVQNAMVNILFYYAREHPYMCYRQGMHEILAPI
IFVVYSDHQSLLHFSELAKTDINPTLLDVLDPAYLEADTYSLFSRLMASV
ESYYRVSNLVSTPGGHIEQRAESPGDNETSTEAEVIGQLNFIRDKILAKQ
DQHLHHYLQKMEIPLHIFGIRWLRLLFGREFMLLDLLLLWDAIFADSDRF
DLPNYILVAMLVHIRDKLLLSDYTTSLTYLMRYPNNVDVHLVLRHALFML
NPKQFEYPPNAFTCVSFANSSADKDVPPPAGQRPRTNSENSSMATSGSQI
DRQITFMQERNAADSSALAKLQDTHRVAMDGYLENSPELLRLELKNAQTV
IKIARSKLQSYLSTVRHHVGKQANGSEELGRTLDGIEELCSFLDVKFMFP
LHQRSAPIDQALEANEQKQLNTVSKPPKPTASSTPANAPAALSATGGYQM
PENAFMHSSMRRLLGELREIELSTITSDEKPGNAVVQNGLPAAEPQQRHR
NESS*
BS16827.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:35:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8449-PA | 654 | CG8449-PA | 1..654 | 1..654 | 3380 | 100 | Plus |
GAPsec-PA | 403 | CG5978-PA | 23..399 | 58..396 | 283 | 25.3 | Plus |
CG5745-PA | 546 | CG5745-PA | 194..509 | 17..382 | 243 | 24.3 | Plus |