Clone BS16828 Report

Search the DGRC for BS16828

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:168
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptLsd-1-RC
Protein status:BS16828.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16828.3prime Sequence

853 bp (794 high quality bases) assembled on 2007-05-15

> BS16828.3prime
ATGGTCTAGAAAGCTTCTAGTAGACGCCGTTGATGTTATTGTGGGTGGCT
GAATAATGGTTCGGATCCTGCCTCCTCCGCGATGACCGGTGGTTGGAATT
GCCGCCATCGCTGCCCGTCACCTTCTCGGCCTCCATGCGTCCGGATAGAA
AGCTGGCCACGCGCTCCAGGTAGGCATTGGTCAGGCCCTGAAGGCTACCA
TAGAACGCCAGCATGCGCTTGAAAAGAGATTCAGCTTCCTCTTTGGAGAT
GGTTTTAACCTTGTCCAGCCGTGAGATTGTGATGATGCGGTGGTTGATAT
AGATAATATGGTGGGCAACCTCTGTTGTCGTGTGCGCCAGGTTTCTGGGT
ATGTTGGCTGCCACATGAGCACTGAAGTTCACTAGATGAACCACACGCCT
AGCCGATTCGCGGGTCAGTAGCACAATCAACTGCTCCAGAGTGGCGGGCC
TCGCTTGATTTTCGGGTTCATCTGCACTGAGATAGACCCACAGTTCCTTG
GCCTTTTGAACGGCCTGCTTGGGATCGGTGGCAATCAATTCTGCGGCATA
GAAGAGCACGTGGATCGCCTCCTTGCTCTGCTTTTTGAGGGCGCGAGCCT
CTGCGATGGTTCTTTGGGTAAGGCGGCGCTTCAGTTTGCGGGAGAAGCGT
TGACCATGATGGATCGCCTTGATGGCGCCCCTCTCGTCCGGCACGGCCTC
GTTATCATCCTCCTGTGGGCCATCGGTCTGATCCTGATCTGTTTGGATGG
GCACCAGGTACTTGTCCACGAACTTATCGCCGACTGTGAAAGCGCCATCA
ATGCGCTCGGCTGCATAAGTGGTAAGTGGACTCTCGAGGACAGCATTACC
GAT

BS16828.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:27:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG10374-PC 1218 Lsd-1-RC 382..1218 853..17 4185 100 Minus
CG10374-PB 978 Lsd-1-RB 142..978 853..17 4185 100 Minus
CG10374-PA 1296 Lsd-1-RA 593..1296 720..17 3520 100 Minus
CG10374-PA 1296 Lsd-1-RA 382..514 853..721 665 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
Lsd-1-RD 1432 CG10374-RD 457..1293 853..17 4185 100 Minus
Lsd-1-RB 1501 CG10374-RB 526..1362 853..17 4185 100 Minus
Lsd-1-RC 1813 CG10374-RC 838..1674 853..17 4185 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:46:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23765875..23766066 536..345 960 100 Minus
3R 32079331 3R 23765511..23765696 721..536 930 100 Minus
3R 32079331 3R 23766127..23766308 347..166 910 100 Minus
3R 32079331 3R 23766373..23766523 167..17 755 100 Minus
3R 32079331 3R 23764827..23764960 853..720 670 100 Minus
Blast to na_te.dros performed on 2015-02-11 03:46:56 has no hits.

BS16828.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:27:27 Download gff for BS16828.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10374-PB 142..978 17..853 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:26:50 Download gff for BS16828.3prime
Subject Subject Range Query Range Percent Splice Strand
Lsd-1-RC 838..1678 11..853 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:29:46 Download gff for BS16828.3prime
Subject Subject Range Query Range Percent Splice Strand
Lsd-1-RC 838..1678 11..853 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:29:46 Download gff for BS16828.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23764827..23764959 721..853 100 -> Minus
3R 23765512..23765696 536..720 100 -> Minus
3R 23765876..23766066 345..535 100 -> Minus
3R 23766130..23766307 167..344 100 -> Minus
3R 23766374..23766527 11..166 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:26:50 Download gff for BS16828.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19590549..19590681 721..853 100 -> Minus
arm_3R 19591234..19591418 536..720 100 -> Minus
arm_3R 19591598..19591788 345..535 100 -> Minus
arm_3R 19591852..19592029 167..344 100 -> Minus
arm_3R 19592096..19592249 11..166 98   Minus

BS16828.5prime Sequence

899 bp (839 high quality bases) assembled on 2007-05-15

> BS16828.5prime
GAAGTTATCAGTCGACATGGCAACTGCAACCAGCGGCAGTGGACTCCATC
TGGAGGCCATCGATCGCATCGGCTCCATTCCCCTTGTGGAATCCAGTGTG
AAGCGGGTGGAGACCATCTACGATAAGGTGAAGAACAACAATAGGCTATT
CTCATGGTATTTTGAGACGGCGGAGGCCACCATTTCGGCCGCCTACGAAA
CCATCCAGCCGGCGGTCAAGCTCTTCGAGCCATCCATTCAGCGCCTGGAC
AACGTGATGTGCAAAAGCCTGGACATTCTGGAGCAGCGCATACCACTGGT
CTATCTGCCGCCCGAAATGATGTACTGGAACACCAAGGAGTACATGTCCG
ATCACCTGGTGCGTCCGGTTCTGAAACGCGCCGATTCTGTCAAGCAAATC
GGTAATGCTGTCCTCGAGAGTCCACTTACCACTTATGCAGCCGAGCGCAT
TGATGGCGCTTTCACAGTCGGCGATAAGTTCGTGGACAAGTACCTGGTGC
CCATCCAAACAGATCAGGATCAGACCGATGGCCCACAGGAGGATGATAAC
GAGGCCGTGCCGGACGAGAGGGGCGCCATCAAGGCGATCCATCATGGTCA
ACGCTTCTCCCGCAAACTGAAGCGCCGCCTTACCCAAAGAACCATCGCAG
AGGCTCGCGCCCTCAAAAAGCAGAGCAAGGAGGCGATCCACGTGCTCTTC
TATGCCGCAGAATTGATTGCCACCGATCCCAAGCAGGCCGTTCAAAAGGC
CAAGGAACTGTGGGTCTATCTCAGTGCAGATGAACCCGAAAATCAAGCGA
GGCCCGCCACTCTGGAGCAGTTGATTGTGCTACTGACCCGCGAATCGGCT
AGGCGTGTGGTTCATCTAGTGAACTTCAGTGCTCATGTGGCAACCAACA

BS16828.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:21:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10374-PC 1218 Lsd-1-RC 1..883 17..899 4390 99.8 Plus
CG10374-PB 978 Lsd-1-RB 1..643 257..899 3190 99.8 Plus
CG10374-PA 1296 Lsd-1-RA 1..514 17..530 2570 100 Plus
CG10374-PA 1296 Lsd-1-RA 593..961 531..899 1820 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:12:08
Subject Length Description Subject Range Query Range Score Percent Strand
Lsd-1-RD 1432 CG10374-RD 76..958 17..899 4400 99.9 Plus
Lsd-1-RC 1813 CG10374-RC 457..1339 17..899 4400 99.9 Plus
Lsd-1-RB 1501 CG10374-RB 148..1027 20..899 4385 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23764385..23764684 20..319 1500 100 Plus
3R 32079331 3R 23764748..23764960 319..531 1065 100 Plus
3R 32079331 3R 23765511..23765696 530..715 930 100 Plus
3R 32079331 3R 23765875..23766059 715..899 910 99.5 Plus
Blast to na_te.dros performed on 2015-02-12 05:12:06 has no hits.

BS16828.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:21:42 Download gff for BS16828.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10374-PC 1..882 17..898 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:41:02 Download gff for BS16828.5prime
Subject Subject Range Query Range Percent Splice Strand
Lsd-1-RC 452..1338 9..898 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:30:37 Download gff for BS16828.5prime
Subject Subject Range Query Range Percent Splice Strand
Lsd-1-RC 452..1338 9..898 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:30:37 Download gff for BS16828.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23764383..23764684 16..319 99 -> Plus
3R 23764749..23764959 320..530 100 -> Plus
3R 23765512..23765696 531..715 100 -> Plus
3R 23765876..23766058 716..898 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:41:02 Download gff for BS16828.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19590105..19590406 16..319 99 -> Plus
arm_3R 19590471..19590681 320..530 100 -> Plus
arm_3R 19591234..19591418 531..715 100 -> Plus
arm_3R 19591598..19591780 716..898 99   Plus

BS16828.complete Sequence

1250 bp assembled on 2007-05-07

GenBank Submission: FJ638199

> BS16828.complete
GAAGTTATCAGTCGACATGGCAACTGCAACCAGCGGCAGTGGACTCCATC
TGGAGGCCATCGATCGCATCGGCTCCATTCCCCTTGTGGAATCCAGTGTG
AAGCGGGTGGAGACCATCTACGATAAGGTGAAGAACAACAATAGGCTATT
CTCATGGTATTTTGAGACGGCGGAGGCCACCATTTCGGCCGCCTACGAAA
CCATCCAGCCGGCGGTCAAGCTCTTCGAGCCATCCATTCAGCGCCTGGAC
AACGTGATGTGCAAAAGCCTGGACATTCTGGAGCAGCGCATACCACTGGT
CTATCTGCCGCCCGAAATGATGTACTGGAACACCAAGGAGTACATGTCCG
ATCACCTGGTGCGTCCGGTTCTGAAACGCGCCGATTCTGTCAAGCAAATC
GGTAATGCTGTCCTCGAGAGTCCACTTACCACTTATGCAGCCGAGCGCAT
TGATGGCGCTTTCACAGTCGGCGATAAGTTCGTGGACAAGTACCTGGTGC
CCATCCAAACAGATCAGGATCAGACCGATGGCCCACAGGAGGATGATAAC
GAGGCCGTGCCGGACGAGAGGGGCGCCATCAAGGCGATCCATCATGGTCA
ACGCTTCTCCCGCAAACTGAAGCGCCGCCTTACCCAAAGAACCATCGCAG
AGGCTCGCGCCCTCAAAAAGCAGAGCAAGGAGGCGATCCACGTGCTCTTC
TATGCCGCAGAATTGATTGCCACCGATCCCAAGCAGGCCGTTCAAAAGGC
CAAGGAACTGTGGGTCTATCTCAGTGCAGATGAACCCGAAAATCAAGCGA
GGCCCGCCACTCTGGAGCAGTTGATTGTGCTACTGACCCGCGAATCGGCT
AGGCGTGTGGTTCATCTAGTGAACTTCAGTGCTCATGTGGCAGCCAACAT
ACCCAGAAACCTGGCGCACACGACAACAGAGGTTGCCCACCATATTATCT
ATATCAACCACCGCATCATCACAATCTCACGGCTGGACAAGGTTAAAACC
ATCTCCAAAGAGGAAGCTGAATCTCTTTTCAAGCGCATGCTGGCGTTCTA
TGGTAGCCTTCAGGGCCTGACCAATGCCTACCTGGAGCGCGTGGCCAGCT
TTCTATCCGGACGCATGGAGGCCGAGAAGGTGACGGGCAGCGATGGCGGC
AATTCCAACCACCGGTCATCGCGGAGGAGGCAGGATCCGAACCATTATTC
AGCCACCCACAATAACATCAACGGCGTCTACTAGAAGCTTTCTAGACCAT

BS16828.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
Lsd-1-RD 1218 CG10374-PD 1..1218 17..1234 6090 100 Plus
Lsd-1-RC 1218 CG10374-PC 1..1218 17..1234 6090 100 Plus
Lsd-1-RB 978 CG10374-PB 1..978 257..1234 4890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:16:24
Subject Length Description Subject Range Query Range Score Percent Strand
Lsd-1-RD 1432 CG10374-RD 76..1293 17..1234 6090 100 Plus
Lsd-1-RC 1813 CG10374-RC 457..1674 17..1234 6090 100 Plus
Lsd-1-RB 1501 CG10374-RB 148..1362 20..1234 6075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:16:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23764385..23764684 20..319 1500 100 Plus
3R 32079331 3R 23764748..23764960 319..531 1065 100 Plus
3R 32079331 3R 23765875..23766066 715..906 960 100 Plus
3R 32079331 3R 23765511..23765696 530..715 930 100 Plus
3R 32079331 3R 23766127..23766308 904..1085 910 100 Plus
3R 32079331 3R 23766373..23766523 1084..1234 755 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:16:22 has no hits.

BS16828.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:43 Download gff for BS16828.complete
Subject Subject Range Query Range Percent Splice Strand
Lsd-1-RC 1..1218 17..1234 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:46 Download gff for BS16828.complete
Subject Subject Range Query Range Percent Splice Strand
Lsd-1-RC 452..1678 9..1240 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:52:33 Download gff for BS16828.complete
Subject Subject Range Query Range Percent Splice Strand
Lsd-1-RC 457..1674 17..1234 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:43 Download gff for BS16828.complete
Subject Subject Range Query Range Percent Splice Strand
Lsd-1-RC 452..1678 9..1240 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:56:08 Download gff for BS16828.complete
Subject Subject Range Query Range Percent Splice Strand
Lsd-1-RC 457..1674 17..1234 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:56:08 Download gff for BS16828.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23766374..23766523 1085..1234 100   Plus
3R 23764384..23764684 17..319 99 -> Plus
3R 23764749..23764959 320..530 100 -> Plus
3R 23765512..23765696 531..715 100 -> Plus
3R 23765876..23766066 716..906 100 -> Plus
3R 23766130..23766307 907..1084 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:52:33 Download gff for BS16828.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19592096..19592245 1085..1234 100   Plus
arm_3R 19590106..19590406 17..319 99 -> Plus
arm_3R 19590471..19590681 320..530 100 -> Plus
arm_3R 19591234..19591418 531..715 100 -> Plus
arm_3R 19591598..19591788 716..906 100 -> Plus
arm_3R 19591852..19592029 907..1084 100 -> Plus

BS16828.pep Sequence

Translation from 16 to 1233

> BS16828.pep
MATATSGSGLHLEAIDRIGSIPLVESSVKRVETIYDKVKNNNRLFSWYFE
TAEATISAAYETIQPAVKLFEPSIQRLDNVMCKSLDILEQRIPLVYLPPE
MMYWNTKEYMSDHLVRPVLKRADSVKQIGNAVLESPLTTYAAERIDGAFT
VGDKFVDKYLVPIQTDQDQTDGPQEDDNEAVPDERGAIKAIHHGQRFSRK
LKRRLTQRTIAEARALKKQSKEAIHVLFYAAELIATDPKQAVQKAKELWV
YLSADEPENQARPATLEQLIVLLTRESARRVVHLVNFSAHVAANIPRNLA
HTTTEVAHHIIYINHRIITISRLDKVKTISKEEAESLFKRMLAFYGSLQG
LTNAYLERVASFLSGRMEAEKVTGSDGGNSNHRSSRRRQDPNHYSATHNN
INGVY*

BS16828.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
Lsd-1-PD 405 CG10374-PD 1..405 1..405 2059 100 Plus
Lsd-1-PC 405 CG10374-PC 1..405 1..405 2059 100 Plus
Lsd-1-PA 431 CG10374-PA 1..431 1..405 2016 93.7 Plus
Lsd-1-PB 325 CG10374-PB 1..325 81..405 1660 100 Plus
Lsd-2-PB 335 CG9057-PB 36..251 11..218 205 25.4 Plus