Clone Sequence Records
BS16828.3prime Sequence
853 bp (794 high quality bases) assembled on 2007-05-15
> BS16828.3prime
ATGGTCTAGAAAGCTTCTAGTAGACGCCGTTGATGTTATTGTGGGTGGCT
GAATAATGGTTCGGATCCTGCCTCCTCCGCGATGACCGGTGGTTGGAATT
GCCGCCATCGCTGCCCGTCACCTTCTCGGCCTCCATGCGTCCGGATAGAA
AGCTGGCCACGCGCTCCAGGTAGGCATTGGTCAGGCCCTGAAGGCTACCA
TAGAACGCCAGCATGCGCTTGAAAAGAGATTCAGCTTCCTCTTTGGAGAT
GGTTTTAACCTTGTCCAGCCGTGAGATTGTGATGATGCGGTGGTTGATAT
AGATAATATGGTGGGCAACCTCTGTTGTCGTGTGCGCCAGGTTTCTGGGT
ATGTTGGCTGCCACATGAGCACTGAAGTTCACTAGATGAACCACACGCCT
AGCCGATTCGCGGGTCAGTAGCACAATCAACTGCTCCAGAGTGGCGGGCC
TCGCTTGATTTTCGGGTTCATCTGCACTGAGATAGACCCACAGTTCCTTG
GCCTTTTGAACGGCCTGCTTGGGATCGGTGGCAATCAATTCTGCGGCATA
GAAGAGCACGTGGATCGCCTCCTTGCTCTGCTTTTTGAGGGCGCGAGCCT
CTGCGATGGTTCTTTGGGTAAGGCGGCGCTTCAGTTTGCGGGAGAAGCGT
TGACCATGATGGATCGCCTTGATGGCGCCCCTCTCGTCCGGCACGGCCTC
GTTATCATCCTCCTGTGGGCCATCGGTCTGATCCTGATCTGTTTGGATGG
GCACCAGGTACTTGTCCACGAACTTATCGCCGACTGTGAAAGCGCCATCA
ATGCGCTCGGCTGCATAAGTGGTAAGTGGACTCTCGAGGACAGCATTACC
GAT
BS16828.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:27:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10374-PC | 1218 | Lsd-1-RC | 382..1218 | 853..17 | 4185 | 100 | Minus |
CG10374-PB | 978 | Lsd-1-RB | 142..978 | 853..17 | 4185 | 100 | Minus |
CG10374-PA | 1296 | Lsd-1-RA | 593..1296 | 720..17 | 3520 | 100 | Minus |
CG10374-PA | 1296 | Lsd-1-RA | 382..514 | 853..721 | 665 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:46:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lsd-1-RD | 1432 | CG10374-RD | 457..1293 | 853..17 | 4185 | 100 | Minus |
Lsd-1-RB | 1501 | CG10374-RB | 526..1362 | 853..17 | 4185 | 100 | Minus |
Lsd-1-RC | 1813 | CG10374-RC | 838..1674 | 853..17 | 4185 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:46:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23765875..23766066 | 536..345 | 960 | 100 | Minus |
3R | 32079331 | 3R | 23765511..23765696 | 721..536 | 930 | 100 | Minus |
3R | 32079331 | 3R | 23766127..23766308 | 347..166 | 910 | 100 | Minus |
3R | 32079331 | 3R | 23766373..23766523 | 167..17 | 755 | 100 | Minus |
3R | 32079331 | 3R | 23764827..23764960 | 853..720 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:46:56 has no hits.
BS16828.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:27:27 Download gff for
BS16828.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10374-PB | 142..978 | 17..853 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:26:50 Download gff for
BS16828.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-1-RC | 838..1678 | 11..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:29:46 Download gff for
BS16828.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-1-RC | 838..1678 | 11..853 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:29:46 Download gff for
BS16828.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23764827..23764959 | 721..853 | 100 | -> | Minus |
3R | 23765512..23765696 | 536..720 | 100 | -> | Minus |
3R | 23765876..23766066 | 345..535 | 100 | -> | Minus |
3R | 23766130..23766307 | 167..344 | 100 | -> | Minus |
3R | 23766374..23766527 | 11..166 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:26:50 Download gff for
BS16828.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19590549..19590681 | 721..853 | 100 | -> | Minus |
arm_3R | 19591234..19591418 | 536..720 | 100 | -> | Minus |
arm_3R | 19591598..19591788 | 345..535 | 100 | -> | Minus |
arm_3R | 19591852..19592029 | 167..344 | 100 | -> | Minus |
arm_3R | 19592096..19592249 | 11..166 | 98 | | Minus |
BS16828.5prime Sequence
899 bp (839 high quality bases) assembled on 2007-05-15
> BS16828.5prime
GAAGTTATCAGTCGACATGGCAACTGCAACCAGCGGCAGTGGACTCCATC
TGGAGGCCATCGATCGCATCGGCTCCATTCCCCTTGTGGAATCCAGTGTG
AAGCGGGTGGAGACCATCTACGATAAGGTGAAGAACAACAATAGGCTATT
CTCATGGTATTTTGAGACGGCGGAGGCCACCATTTCGGCCGCCTACGAAA
CCATCCAGCCGGCGGTCAAGCTCTTCGAGCCATCCATTCAGCGCCTGGAC
AACGTGATGTGCAAAAGCCTGGACATTCTGGAGCAGCGCATACCACTGGT
CTATCTGCCGCCCGAAATGATGTACTGGAACACCAAGGAGTACATGTCCG
ATCACCTGGTGCGTCCGGTTCTGAAACGCGCCGATTCTGTCAAGCAAATC
GGTAATGCTGTCCTCGAGAGTCCACTTACCACTTATGCAGCCGAGCGCAT
TGATGGCGCTTTCACAGTCGGCGATAAGTTCGTGGACAAGTACCTGGTGC
CCATCCAAACAGATCAGGATCAGACCGATGGCCCACAGGAGGATGATAAC
GAGGCCGTGCCGGACGAGAGGGGCGCCATCAAGGCGATCCATCATGGTCA
ACGCTTCTCCCGCAAACTGAAGCGCCGCCTTACCCAAAGAACCATCGCAG
AGGCTCGCGCCCTCAAAAAGCAGAGCAAGGAGGCGATCCACGTGCTCTTC
TATGCCGCAGAATTGATTGCCACCGATCCCAAGCAGGCCGTTCAAAAGGC
CAAGGAACTGTGGGTCTATCTCAGTGCAGATGAACCCGAAAATCAAGCGA
GGCCCGCCACTCTGGAGCAGTTGATTGTGCTACTGACCCGCGAATCGGCT
AGGCGTGTGGTTCATCTAGTGAACTTCAGTGCTCATGTGGCAACCAACA
BS16828.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:21:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10374-PC | 1218 | Lsd-1-RC | 1..883 | 17..899 | 4390 | 99.8 | Plus |
CG10374-PB | 978 | Lsd-1-RB | 1..643 | 257..899 | 3190 | 99.8 | Plus |
CG10374-PA | 1296 | Lsd-1-RA | 1..514 | 17..530 | 2570 | 100 | Plus |
CG10374-PA | 1296 | Lsd-1-RA | 593..961 | 531..899 | 1820 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:12:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lsd-1-RD | 1432 | CG10374-RD | 76..958 | 17..899 | 4400 | 99.9 | Plus |
Lsd-1-RC | 1813 | CG10374-RC | 457..1339 | 17..899 | 4400 | 99.9 | Plus |
Lsd-1-RB | 1501 | CG10374-RB | 148..1027 | 20..899 | 4385 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:12:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23764385..23764684 | 20..319 | 1500 | 100 | Plus |
3R | 32079331 | 3R | 23764748..23764960 | 319..531 | 1065 | 100 | Plus |
3R | 32079331 | 3R | 23765511..23765696 | 530..715 | 930 | 100 | Plus |
3R | 32079331 | 3R | 23765875..23766059 | 715..899 | 910 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:12:06 has no hits.
BS16828.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:21:42 Download gff for
BS16828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10374-PC | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:41:02 Download gff for
BS16828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-1-RC | 452..1338 | 9..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:30:37 Download gff for
BS16828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-1-RC | 452..1338 | 9..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:30:37 Download gff for
BS16828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23764383..23764684 | 16..319 | 99 | -> | Plus |
3R | 23764749..23764959 | 320..530 | 100 | -> | Plus |
3R | 23765512..23765696 | 531..715 | 100 | -> | Plus |
3R | 23765876..23766058 | 716..898 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:41:02 Download gff for
BS16828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19590105..19590406 | 16..319 | 99 | -> | Plus |
arm_3R | 19590471..19590681 | 320..530 | 100 | -> | Plus |
arm_3R | 19591234..19591418 | 531..715 | 100 | -> | Plus |
arm_3R | 19591598..19591780 | 716..898 | 99 | | Plus |
BS16828.complete Sequence
1250 bp assembled on 2007-05-07
GenBank Submission: FJ638199
> BS16828.complete
GAAGTTATCAGTCGACATGGCAACTGCAACCAGCGGCAGTGGACTCCATC
TGGAGGCCATCGATCGCATCGGCTCCATTCCCCTTGTGGAATCCAGTGTG
AAGCGGGTGGAGACCATCTACGATAAGGTGAAGAACAACAATAGGCTATT
CTCATGGTATTTTGAGACGGCGGAGGCCACCATTTCGGCCGCCTACGAAA
CCATCCAGCCGGCGGTCAAGCTCTTCGAGCCATCCATTCAGCGCCTGGAC
AACGTGATGTGCAAAAGCCTGGACATTCTGGAGCAGCGCATACCACTGGT
CTATCTGCCGCCCGAAATGATGTACTGGAACACCAAGGAGTACATGTCCG
ATCACCTGGTGCGTCCGGTTCTGAAACGCGCCGATTCTGTCAAGCAAATC
GGTAATGCTGTCCTCGAGAGTCCACTTACCACTTATGCAGCCGAGCGCAT
TGATGGCGCTTTCACAGTCGGCGATAAGTTCGTGGACAAGTACCTGGTGC
CCATCCAAACAGATCAGGATCAGACCGATGGCCCACAGGAGGATGATAAC
GAGGCCGTGCCGGACGAGAGGGGCGCCATCAAGGCGATCCATCATGGTCA
ACGCTTCTCCCGCAAACTGAAGCGCCGCCTTACCCAAAGAACCATCGCAG
AGGCTCGCGCCCTCAAAAAGCAGAGCAAGGAGGCGATCCACGTGCTCTTC
TATGCCGCAGAATTGATTGCCACCGATCCCAAGCAGGCCGTTCAAAAGGC
CAAGGAACTGTGGGTCTATCTCAGTGCAGATGAACCCGAAAATCAAGCGA
GGCCCGCCACTCTGGAGCAGTTGATTGTGCTACTGACCCGCGAATCGGCT
AGGCGTGTGGTTCATCTAGTGAACTTCAGTGCTCATGTGGCAGCCAACAT
ACCCAGAAACCTGGCGCACACGACAACAGAGGTTGCCCACCATATTATCT
ATATCAACCACCGCATCATCACAATCTCACGGCTGGACAAGGTTAAAACC
ATCTCCAAAGAGGAAGCTGAATCTCTTTTCAAGCGCATGCTGGCGTTCTA
TGGTAGCCTTCAGGGCCTGACCAATGCCTACCTGGAGCGCGTGGCCAGCT
TTCTATCCGGACGCATGGAGGCCGAGAAGGTGACGGGCAGCGATGGCGGC
AATTCCAACCACCGGTCATCGCGGAGGAGGCAGGATCCGAACCATTATTC
AGCCACCCACAATAACATCAACGGCGTCTACTAGAAGCTTTCTAGACCAT
BS16828.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:16:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lsd-1-RD | 1218 | CG10374-PD | 1..1218 | 17..1234 | 6090 | 100 | Plus |
Lsd-1-RC | 1218 | CG10374-PC | 1..1218 | 17..1234 | 6090 | 100 | Plus |
Lsd-1-RB | 978 | CG10374-PB | 1..978 | 257..1234 | 4890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:16:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lsd-1-RD | 1432 | CG10374-RD | 76..1293 | 17..1234 | 6090 | 100 | Plus |
Lsd-1-RC | 1813 | CG10374-RC | 457..1674 | 17..1234 | 6090 | 100 | Plus |
Lsd-1-RB | 1501 | CG10374-RB | 148..1362 | 20..1234 | 6075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:16:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23764385..23764684 | 20..319 | 1500 | 100 | Plus |
3R | 32079331 | 3R | 23764748..23764960 | 319..531 | 1065 | 100 | Plus |
3R | 32079331 | 3R | 23765875..23766066 | 715..906 | 960 | 100 | Plus |
3R | 32079331 | 3R | 23765511..23765696 | 530..715 | 930 | 100 | Plus |
3R | 32079331 | 3R | 23766127..23766308 | 904..1085 | 910 | 100 | Plus |
3R | 32079331 | 3R | 23766373..23766523 | 1084..1234 | 755 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:16:22 has no hits.
BS16828.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:43 Download gff for
BS16828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-1-RC | 1..1218 | 17..1234 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:46 Download gff for
BS16828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-1-RC | 452..1678 | 9..1240 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:52:33 Download gff for
BS16828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-1-RC | 457..1674 | 17..1234 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:43 Download gff for
BS16828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-1-RC | 452..1678 | 9..1240 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:56:08 Download gff for
BS16828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-1-RC | 457..1674 | 17..1234 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:56:08 Download gff for
BS16828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23766374..23766523 | 1085..1234 | 100 | | Plus |
3R | 23764384..23764684 | 17..319 | 99 | -> | Plus |
3R | 23764749..23764959 | 320..530 | 100 | -> | Plus |
3R | 23765512..23765696 | 531..715 | 100 | -> | Plus |
3R | 23765876..23766066 | 716..906 | 100 | -> | Plus |
3R | 23766130..23766307 | 907..1084 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:52:33 Download gff for
BS16828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19592096..19592245 | 1085..1234 | 100 | | Plus |
arm_3R | 19590106..19590406 | 17..319 | 99 | -> | Plus |
arm_3R | 19590471..19590681 | 320..530 | 100 | -> | Plus |
arm_3R | 19591234..19591418 | 531..715 | 100 | -> | Plus |
arm_3R | 19591598..19591788 | 716..906 | 100 | -> | Plus |
arm_3R | 19591852..19592029 | 907..1084 | 100 | -> | Plus |
BS16828.pep Sequence
Translation from 16 to 1233
> BS16828.pep
MATATSGSGLHLEAIDRIGSIPLVESSVKRVETIYDKVKNNNRLFSWYFE
TAEATISAAYETIQPAVKLFEPSIQRLDNVMCKSLDILEQRIPLVYLPPE
MMYWNTKEYMSDHLVRPVLKRADSVKQIGNAVLESPLTTYAAERIDGAFT
VGDKFVDKYLVPIQTDQDQTDGPQEDDNEAVPDERGAIKAIHHGQRFSRK
LKRRLTQRTIAEARALKKQSKEAIHVLFYAAELIATDPKQAVQKAKELWV
YLSADEPENQARPATLEQLIVLLTRESARRVVHLVNFSAHVAANIPRNLA
HTTTEVAHHIIYINHRIITISRLDKVKTISKEEAESLFKRMLAFYGSLQG
LTNAYLERVASFLSGRMEAEKVTGSDGGNSNHRSSRRRQDPNHYSATHNN
INGVY*
BS16828.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lsd-1-PD | 405 | CG10374-PD | 1..405 | 1..405 | 2059 | 100 | Plus |
Lsd-1-PC | 405 | CG10374-PC | 1..405 | 1..405 | 2059 | 100 | Plus |
Lsd-1-PA | 431 | CG10374-PA | 1..431 | 1..405 | 2016 | 93.7 | Plus |
Lsd-1-PB | 325 | CG10374-PB | 1..325 | 81..405 | 1660 | 100 | Plus |
Lsd-2-PB | 335 | CG9057-PB | 36..251 | 11..218 | 205 | 25.4 | Plus |