Clone BS16829 Report

Search the DGRC for BS16829

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:168
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptPGRP-LA-RF
Protein status:BS16829.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16829.3prime Sequence

872 bp (733 high quality bases) assembled on 2007-05-15

> BS16829.3prime
ATGGTCTAGAAAGCTTCTATTGCTTGGCGTCCCACGATTCCGTTTTCATG
CCCAATTCGATGCCGCAGGCCGGTGCTTCGTCCATTCCGCAGCCGTAGAA
ATGCGGCCAGTTCCGGATTTCTTGATACACATATGCACCCGGGCTTCTGG
TCACCTTAGTCTGATTTTGCGCCACTAGTTTGTAGTCCACATCAATATTT
CGATTGGCCACTGCATGGGCCAGCAGAAATTGGACACCTTCCAGCTGTTT
GGGACCGGGCTTAAACCGGCCATAGTCGCCCATAAAGGTAATGGCCAATG
TCTGGTTCGCATACGTGTTGGCCCAGTCCCAGCCGCGGCCAACGTAGATG
TTACCCTCCTCCGAAACATAAAAATTGGATTGGATATCCGGCAGACCCTT
CTCAGCAATGGCTGAATCCTGAATGGTGCGCATCTTGATGGAGCACTTGT
AGATGTTATCGCAGGGCAGAGACTGCACTCCAATGTGGGTGATTAGGACG
TAGGGAATGGGTCGCTTCAGGGGAATGGTCAGACCATGAGAGTTCTTCGA
CGCTCCCCACTGCTCTCTGTCGACGACGAGATGGCCGTTTCCTAGATTCG
GAAACGTTTGGTGGTCGTAGTTGTTGCCAAAATAGATGGCTTTATTACTG
GGCAACTCGGGCTTGGGTCGATTGAGTTCCACGTAGAGCACAATCAATCC
GGTGGCCAGGACCAACAGGATCAGCGTGATCAGCAGGATGGTGTTCCGAG
TGACCCGCCTAGATGGCGACTTATCACGACTTCGATTGGCGTTGCCATTA
CCATTTGGCATGTTGCTGTTGATTCTTGATGAATCCCGGGAGTGGGCTAA
ACTGGGTTCGGGTGTACGTCTT

BS16829.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:27:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG32042-PF 900 PGRP-LA-RF 112..900 805..17 3945 100 Minus
CG32042-PE 1107 PGRP-LA-RE 319..1107 805..17 3945 100 Minus
CG32042-PC 417 PGRP-LA-RC 1..417 433..17 2085 100 Minus
CG32042-PD 520 PGRP-LA-RD 319..520 805..604 1010 100 Minus
CG32042-PF 900 PGRP-LA-RF 45..106 872..811 310 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LA-RF 1606 CG32042-RF 284..1139 872..17 4235 99.8 Minus
PGRP-LA-RC 1593 CG32042-RC 283..1126 872..17 4045 98.4 Minus
PGRP-LA-RG 945 CG32042-RG 68..878 827..17 4010 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:55:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9336986..9337223 603..366 1190 100 Minus
3L 28110227 3L 9336712..9336933 825..604 1050 98.2 Minus
3L 28110227 3L 9337454..9337660 367..161 1035 100 Minus
3L 28110227 3L 9337723..9337869 163..17 735 100 Minus
3L 28110227 3L 9336337..9336384 872..825 240 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:55:31 has no hits.

BS16829.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:27:39 Download gff for BS16829.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32042-PE 296..1107 17..828 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:11:30 Download gff for BS16829.3prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RF 284..1141 12..872 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:14 Download gff for BS16829.3prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RF 284..1141 12..872 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:14 Download gff for BS16829.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9336337..9336383 826..872 100 -> Minus
3L 9336712..9336933 604..825 99 -> Minus
3L 9336986..9337221 368..603 100 -> Minus
3L 9337454..9337660 161..367 100 -> Minus
3L 9337726..9337871 12..160 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:11:30 Download gff for BS16829.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9329437..9329483 826..872 100 -> Minus
arm_3L 9329812..9330033 604..825 99 -> Minus
arm_3L 9330086..9330321 368..603 100 -> Minus
arm_3L 9330554..9330760 161..367 100 -> Minus
arm_3L 9330826..9330971 12..160 97   Minus

BS16829.5prime Sequence

903 bp (836 high quality bases) assembled on 2007-05-15

> BS16829.5prime
GAAGTTATCAGTCGACATGAAACTGTTACTAAAAGTTCACTCGGAACGCA
CGGCGCGCAGAAGACGTACACCCGAACCCAGTTTAGCCCACTCCCGGGAT
TCATCAAGAATCAACAGCAACAATGCCAATGGTAATGGCAACGCCAATCG
AAGTCGTGATAAGTCGCCATCTAGGCGGGTCACTCGGAACACCATCCTGC
TGATCACGCTGATCCTGTTGGTCCTGGCCACCGGATTGATTGTGCTCTAC
GTGGAACTCAATCGACCCAAGCCCGAGTTGCCCAGTAATAAAGCCATCTA
TTTTGGCAACAACTACGACCACCAAACGTTTCCGAATCTAGGAAACGGCC
ATCTCGTCGTCGACAGAGAGCAGTGGGGAGCGTCGAAGAACTCTCATGGT
CTGACCATTCCCCTGAAGCGACCCATTCCCTACGTCCTAATCACCCACAT
TGGAGTGCAGTCTCTGCCCTGCGATAACATCTACAAGTGCTCCATCAAGA
TGCGCACCATTCAGGATTCAGCCATTGCTGAGAAGGGTCTGCCGGATATC
CAATCCAATTTTTATGTTTCGGAGGAGGGTAACATCTACGTTGGCCGCGG
CTGGGACTGGGCCAACACGTATGCGAACCAGACATTGGCCATTACCTTTA
TGGGCGACTATGGCCGGTTTAAGCCCGGTCCCAAACAGCTGGAAGGTGTC
CAATTTCTGCTGGCCCATGCAGTGGCCAATCGAAATATTGATGTGGACTA
CAAACTAGTGGCGCAAAATCAGACTAAGGTGACCAGAAGCCCGGGTGCAT
ATGTGTATCAAGAAATCCGGAACTGGCCGCATTTCTACGGCTGCGGAATG
GACGAAGCACCGGCCTGCGGCATCGAATTGGGCATGAAACGGAATCGTGG
GAC

BS16829.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG32042-PF 900 PGRP-LA-RF 1..873 17..889 4365 100 Plus
CG32042-PE 1107 PGRP-LA-RE 299..1080 108..889 3910 100 Plus
CG32042-PC 417 PGRP-LA-RC 1..390 500..889 1950 100 Plus
CG32042-PD 520 PGRP-LA-RD 299..520 108..329 1110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LA-RF 1606 CG32042-RF 239..1127 16..903 4420 99.9 Plus
PGRP-LA-RC 1593 CG32042-RC 238..1114 16..903 4230 98.5 Plus
PGRP-LA-RG 945 CG32042-RG 68..866 106..903 3970 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9336986..9337223 330..567 1190 100 Plus
3L 28110227 3L 9336712..9336933 108..329 1110 100 Plus
3L 28110227 3L 9337454..9337660 566..772 1035 100 Plus
3L 28110227 3L 9337723..9337857 770..903 625 99.3 Plus
3L 28110227 3L 9336292..9336384 16..108 465 100 Plus
Blast to na_te.dros performed on 2015-02-11 02:25:30 has no hits.

BS16829.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:21:52 Download gff for BS16829.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32042-PF 1..888 17..903 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:00:00 Download gff for BS16829.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RF 234..1127 10..903 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:16:05 Download gff for BS16829.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RF 234..1127 10..903 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:16:05 Download gff for BS16829.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9336287..9336383 10..107 97 -> Plus
3L 9336712..9336933 108..329 100 -> Plus
3L 9336986..9337221 330..565 100 -> Plus
3L 9337454..9337660 566..772 100 -> Plus
3L 9337726..9337857 773..903 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:00:00 Download gff for BS16829.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9329387..9329483 10..107 97 -> Plus
arm_3L 9329812..9330033 108..329 100 -> Plus
arm_3L 9330086..9330321 330..565 100 -> Plus
arm_3L 9330554..9330760 566..772 100 -> Plus
arm_3L 9330826..9330957 773..903 99   Plus

BS16829.complete Sequence

932 bp assembled on 2007-05-07

> BS16829.complete
GAAGTTATCAGTCGACATGAAACTGTTACTAAAAGTTCACTCGGAACGCA
CGGCGCGCAGAAGACGTACACCCGAACCCAGTTTAGCCCACTCCCGGGAT
TCATCAAGAATCAACAGCAACAATGCCAATGGTAATGGCAACGCCAATCG
AAGTCGTGATAAGTCGCCATCTAGGCGGGTCACTCGGAACACCATCCTGC
TGATCACGCTGATCCTGTTGGTCCTGGCCACCGGATTGATTGTGCTCTAC
GTGGAACTCAATCGACCCAAGCCCGAGTTGCCCAGTAATAAAGCCATCTA
TTTTGGCAACAACTACGACCACCAAACGTTTCCGAATCTAGGAAACGGCC
ATCTCGTCGTCGACAGAGAGCAGTGGGGAGCGTCGAAGAACTCTCATGGT
CTGACCATTCCCCTGAAGCGACCCATTCCCTACGTCCTAATCACCCACAT
TGGAGTGCAGTCTCTGCCCTGCGATAACATCTACAAGTGCTCCATCAAGA
TGCGCACCATTCAGGATTCAGCCATTGCTGAGAAGGGTCTGCCGGATATC
CAATCCAATTTTTATGTTTCGGAGGAGGGTAACATCTACGTTGGCCGCGG
CTGGGACTGGGCCAACACGTATGCGAACCAGACATTGGCCATTACCTTTA
TGGGCGACTATGGCCGGTTTAAGCCCGGTCCCAAACAGCTGGAAGGTGTC
CAATTTCTGCTGGCCCATGCAGTGGCCAATCGAAATATTGATGTGGACTA
CAAACTAGTGGCGCAAAATCAGACTAAGGTGACCAGAAGCCCGGGTGCAT
ATGTGTATCAAGAAATCCGGAACTGGCCGCATTTCTACGGCTGCGGAATG
GACGAAGCACCGGCCTGCGGCATCGAATTGGGCATGAAAACGGAATCGTG
GGACGCCAAGCAATAGAAGCTTTCTAGACCAT

BS16829.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:03:52
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LA-RF 900 CG32042-PF 1..900 17..916 4500 100 Plus
PGRP-LA-RE 1107 CG32042-PE 299..1107 108..916 4045 100 Plus
PGRP-LA-RG 417 CG32042-PG 1..417 500..916 2085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:03:53
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LA-RF 1606 CG32042-RF 239..1139 16..916 4505 100 Plus
PGRP-LA-RC 1593 CG32042-RC 238..1126 16..916 4290 98.7 Plus
PGRP-LA-RG 945 CG32042-RG 68..878 106..916 4055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:03:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9336986..9337223 330..567 1190 100 Plus
3L 28110227 3L 9336712..9336933 108..329 1110 100 Plus
3L 28110227 3L 9337454..9337660 566..772 1035 100 Plus
3L 28110227 3L 9337723..9337869 770..916 735 100 Plus
3L 28110227 3L 9336292..9336384 16..108 465 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:03:51 has no hits.

BS16829.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:44 Download gff for BS16829.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RF 1..900 17..916 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:48 Download gff for BS16829.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RF 234..1141 10..921 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:51:29 Download gff for BS16829.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RF 240..1139 17..916 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:44 Download gff for BS16829.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RF 234..1141 10..921 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:24 Download gff for BS16829.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RF 240..1139 17..916 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:10:24 Download gff for BS16829.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9337726..9337869 773..916 100   Plus
3L 9336986..9337221 330..565 100 -> Plus
3L 9336293..9336383 17..107 100 -> Plus
3L 9336712..9336933 108..329 100 -> Plus
3L 9337454..9337660 566..772 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:51:29 Download gff for BS16829.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9329393..9329483 17..107 100 -> Plus
arm_3L 9329812..9330033 108..329 100 -> Plus
arm_3L 9330086..9330321 330..565 100 -> Plus
arm_3L 9330554..9330760 566..772 100 -> Plus
arm_3L 9330826..9330969 773..916 100   Plus

BS16829.pep Sequence

Translation from 16 to 915

> BS16829.pep
MKLLLKVHSERTARRRRTPEPSLAHSRDSSRINSNNANGNGNANRSRDKS
PSRRVTRNTILLITLILLVLATGLIVLYVELNRPKPELPSNKAIYFGNNY
DHQTFPNLGNGHLVVDREQWGASKNSHGLTIPLKRPIPYVLITHIGVQSL
PCDNIYKCSIKMRTIQDSAIAEKGLPDIQSNFYVSEEGNIYVGRGWDWAN
TYANQTLAITFMGDYGRFKPGPKQLEGVQFLLAHAVANRNIDVDYKLVAQ
NQTKVTRSPGAYVYQEIRNWPHFYGCGMDEAPACGIELGMKTESWDAKQ*

BS16829.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LA-PF 299 CG32042-PF 1..299 1..299 1588 100 Plus
PGRP-LA-PE 368 CG32042-PE 92..368 24..299 1435 97.5 Plus
PGRP-LA-PG 138 CG32042-PG 1..138 162..299 749 100 Plus
PGRP-LA-PC 138 CG32042-PC 1..138 162..299 749 100 Plus
PGRP-LA-PD 173 CG32042-PD 92..173 24..104 373 91.5 Plus