Clone Sequence Records
BS16829.3prime Sequence
872 bp (733 high quality bases) assembled on 2007-05-15
> BS16829.3prime
ATGGTCTAGAAAGCTTCTATTGCTTGGCGTCCCACGATTCCGTTTTCATG
CCCAATTCGATGCCGCAGGCCGGTGCTTCGTCCATTCCGCAGCCGTAGAA
ATGCGGCCAGTTCCGGATTTCTTGATACACATATGCACCCGGGCTTCTGG
TCACCTTAGTCTGATTTTGCGCCACTAGTTTGTAGTCCACATCAATATTT
CGATTGGCCACTGCATGGGCCAGCAGAAATTGGACACCTTCCAGCTGTTT
GGGACCGGGCTTAAACCGGCCATAGTCGCCCATAAAGGTAATGGCCAATG
TCTGGTTCGCATACGTGTTGGCCCAGTCCCAGCCGCGGCCAACGTAGATG
TTACCCTCCTCCGAAACATAAAAATTGGATTGGATATCCGGCAGACCCTT
CTCAGCAATGGCTGAATCCTGAATGGTGCGCATCTTGATGGAGCACTTGT
AGATGTTATCGCAGGGCAGAGACTGCACTCCAATGTGGGTGATTAGGACG
TAGGGAATGGGTCGCTTCAGGGGAATGGTCAGACCATGAGAGTTCTTCGA
CGCTCCCCACTGCTCTCTGTCGACGACGAGATGGCCGTTTCCTAGATTCG
GAAACGTTTGGTGGTCGTAGTTGTTGCCAAAATAGATGGCTTTATTACTG
GGCAACTCGGGCTTGGGTCGATTGAGTTCCACGTAGAGCACAATCAATCC
GGTGGCCAGGACCAACAGGATCAGCGTGATCAGCAGGATGGTGTTCCGAG
TGACCCGCCTAGATGGCGACTTATCACGACTTCGATTGGCGTTGCCATTA
CCATTTGGCATGTTGCTGTTGATTCTTGATGAATCCCGGGAGTGGGCTAA
ACTGGGTTCGGGTGTACGTCTT
BS16829.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:27:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32042-PF | 900 | PGRP-LA-RF | 112..900 | 805..17 | 3945 | 100 | Minus |
CG32042-PE | 1107 | PGRP-LA-RE | 319..1107 | 805..17 | 3945 | 100 | Minus |
CG32042-PC | 417 | PGRP-LA-RC | 1..417 | 433..17 | 2085 | 100 | Minus |
CG32042-PD | 520 | PGRP-LA-RD | 319..520 | 805..604 | 1010 | 100 | Minus |
CG32042-PF | 900 | PGRP-LA-RF | 45..106 | 872..811 | 310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:55:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LA-RF | 1606 | CG32042-RF | 284..1139 | 872..17 | 4235 | 99.8 | Minus |
PGRP-LA-RC | 1593 | CG32042-RC | 283..1126 | 872..17 | 4045 | 98.4 | Minus |
PGRP-LA-RG | 945 | CG32042-RG | 68..878 | 827..17 | 4010 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:55:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9336986..9337223 | 603..366 | 1190 | 100 | Minus |
3L | 28110227 | 3L | 9336712..9336933 | 825..604 | 1050 | 98.2 | Minus |
3L | 28110227 | 3L | 9337454..9337660 | 367..161 | 1035 | 100 | Minus |
3L | 28110227 | 3L | 9337723..9337869 | 163..17 | 735 | 100 | Minus |
3L | 28110227 | 3L | 9336337..9336384 | 872..825 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:55:31 has no hits.
BS16829.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:27:39 Download gff for
BS16829.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32042-PE | 296..1107 | 17..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:11:30 Download gff for
BS16829.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RF | 284..1141 | 12..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:14 Download gff for
BS16829.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RF | 284..1141 | 12..872 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:14 Download gff for
BS16829.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9336337..9336383 | 826..872 | 100 | -> | Minus |
3L | 9336712..9336933 | 604..825 | 99 | -> | Minus |
3L | 9336986..9337221 | 368..603 | 100 | -> | Minus |
3L | 9337454..9337660 | 161..367 | 100 | -> | Minus |
3L | 9337726..9337871 | 12..160 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:11:30 Download gff for
BS16829.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9329437..9329483 | 826..872 | 100 | -> | Minus |
arm_3L | 9329812..9330033 | 604..825 | 99 | -> | Minus |
arm_3L | 9330086..9330321 | 368..603 | 100 | -> | Minus |
arm_3L | 9330554..9330760 | 161..367 | 100 | -> | Minus |
arm_3L | 9330826..9330971 | 12..160 | 97 | | Minus |
BS16829.5prime Sequence
903 bp (836 high quality bases) assembled on 2007-05-15
> BS16829.5prime
GAAGTTATCAGTCGACATGAAACTGTTACTAAAAGTTCACTCGGAACGCA
CGGCGCGCAGAAGACGTACACCCGAACCCAGTTTAGCCCACTCCCGGGAT
TCATCAAGAATCAACAGCAACAATGCCAATGGTAATGGCAACGCCAATCG
AAGTCGTGATAAGTCGCCATCTAGGCGGGTCACTCGGAACACCATCCTGC
TGATCACGCTGATCCTGTTGGTCCTGGCCACCGGATTGATTGTGCTCTAC
GTGGAACTCAATCGACCCAAGCCCGAGTTGCCCAGTAATAAAGCCATCTA
TTTTGGCAACAACTACGACCACCAAACGTTTCCGAATCTAGGAAACGGCC
ATCTCGTCGTCGACAGAGAGCAGTGGGGAGCGTCGAAGAACTCTCATGGT
CTGACCATTCCCCTGAAGCGACCCATTCCCTACGTCCTAATCACCCACAT
TGGAGTGCAGTCTCTGCCCTGCGATAACATCTACAAGTGCTCCATCAAGA
TGCGCACCATTCAGGATTCAGCCATTGCTGAGAAGGGTCTGCCGGATATC
CAATCCAATTTTTATGTTTCGGAGGAGGGTAACATCTACGTTGGCCGCGG
CTGGGACTGGGCCAACACGTATGCGAACCAGACATTGGCCATTACCTTTA
TGGGCGACTATGGCCGGTTTAAGCCCGGTCCCAAACAGCTGGAAGGTGTC
CAATTTCTGCTGGCCCATGCAGTGGCCAATCGAAATATTGATGTGGACTA
CAAACTAGTGGCGCAAAATCAGACTAAGGTGACCAGAAGCCCGGGTGCAT
ATGTGTATCAAGAAATCCGGAACTGGCCGCATTTCTACGGCTGCGGAATG
GACGAAGCACCGGCCTGCGGCATCGAATTGGGCATGAAACGGAATCGTGG
GAC
BS16829.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:21:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32042-PF | 900 | PGRP-LA-RF | 1..873 | 17..889 | 4365 | 100 | Plus |
CG32042-PE | 1107 | PGRP-LA-RE | 299..1080 | 108..889 | 3910 | 100 | Plus |
CG32042-PC | 417 | PGRP-LA-RC | 1..390 | 500..889 | 1950 | 100 | Plus |
CG32042-PD | 520 | PGRP-LA-RD | 299..520 | 108..329 | 1110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:25:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LA-RF | 1606 | CG32042-RF | 239..1127 | 16..903 | 4420 | 99.9 | Plus |
PGRP-LA-RC | 1593 | CG32042-RC | 238..1114 | 16..903 | 4230 | 98.5 | Plus |
PGRP-LA-RG | 945 | CG32042-RG | 68..866 | 106..903 | 3970 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:25:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9336986..9337223 | 330..567 | 1190 | 100 | Plus |
3L | 28110227 | 3L | 9336712..9336933 | 108..329 | 1110 | 100 | Plus |
3L | 28110227 | 3L | 9337454..9337660 | 566..772 | 1035 | 100 | Plus |
3L | 28110227 | 3L | 9337723..9337857 | 770..903 | 625 | 99.3 | Plus |
3L | 28110227 | 3L | 9336292..9336384 | 16..108 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:25:30 has no hits.
BS16829.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:21:52 Download gff for
BS16829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32042-PF | 1..888 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:00:00 Download gff for
BS16829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RF | 234..1127 | 10..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:16:05 Download gff for
BS16829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RF | 234..1127 | 10..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:16:05 Download gff for
BS16829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9336287..9336383 | 10..107 | 97 | -> | Plus |
3L | 9336712..9336933 | 108..329 | 100 | -> | Plus |
3L | 9336986..9337221 | 330..565 | 100 | -> | Plus |
3L | 9337454..9337660 | 566..772 | 100 | -> | Plus |
3L | 9337726..9337857 | 773..903 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:00:00 Download gff for
BS16829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9329387..9329483 | 10..107 | 97 | -> | Plus |
arm_3L | 9329812..9330033 | 108..329 | 100 | -> | Plus |
arm_3L | 9330086..9330321 | 330..565 | 100 | -> | Plus |
arm_3L | 9330554..9330760 | 566..772 | 100 | -> | Plus |
arm_3L | 9330826..9330957 | 773..903 | 99 | | Plus |
BS16829.complete Sequence
932 bp assembled on 2007-05-07
> BS16829.complete
GAAGTTATCAGTCGACATGAAACTGTTACTAAAAGTTCACTCGGAACGCA
CGGCGCGCAGAAGACGTACACCCGAACCCAGTTTAGCCCACTCCCGGGAT
TCATCAAGAATCAACAGCAACAATGCCAATGGTAATGGCAACGCCAATCG
AAGTCGTGATAAGTCGCCATCTAGGCGGGTCACTCGGAACACCATCCTGC
TGATCACGCTGATCCTGTTGGTCCTGGCCACCGGATTGATTGTGCTCTAC
GTGGAACTCAATCGACCCAAGCCCGAGTTGCCCAGTAATAAAGCCATCTA
TTTTGGCAACAACTACGACCACCAAACGTTTCCGAATCTAGGAAACGGCC
ATCTCGTCGTCGACAGAGAGCAGTGGGGAGCGTCGAAGAACTCTCATGGT
CTGACCATTCCCCTGAAGCGACCCATTCCCTACGTCCTAATCACCCACAT
TGGAGTGCAGTCTCTGCCCTGCGATAACATCTACAAGTGCTCCATCAAGA
TGCGCACCATTCAGGATTCAGCCATTGCTGAGAAGGGTCTGCCGGATATC
CAATCCAATTTTTATGTTTCGGAGGAGGGTAACATCTACGTTGGCCGCGG
CTGGGACTGGGCCAACACGTATGCGAACCAGACATTGGCCATTACCTTTA
TGGGCGACTATGGCCGGTTTAAGCCCGGTCCCAAACAGCTGGAAGGTGTC
CAATTTCTGCTGGCCCATGCAGTGGCCAATCGAAATATTGATGTGGACTA
CAAACTAGTGGCGCAAAATCAGACTAAGGTGACCAGAAGCCCGGGTGCAT
ATGTGTATCAAGAAATCCGGAACTGGCCGCATTTCTACGGCTGCGGAATG
GACGAAGCACCGGCCTGCGGCATCGAATTGGGCATGAAAACGGAATCGTG
GGACGCCAAGCAATAGAAGCTTTCTAGACCAT
BS16829.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:03:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LA-RF | 900 | CG32042-PF | 1..900 | 17..916 | 4500 | 100 | Plus |
PGRP-LA-RE | 1107 | CG32042-PE | 299..1107 | 108..916 | 4045 | 100 | Plus |
PGRP-LA-RG | 417 | CG32042-PG | 1..417 | 500..916 | 2085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:03:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LA-RF | 1606 | CG32042-RF | 239..1139 | 16..916 | 4505 | 100 | Plus |
PGRP-LA-RC | 1593 | CG32042-RC | 238..1126 | 16..916 | 4290 | 98.7 | Plus |
PGRP-LA-RG | 945 | CG32042-RG | 68..878 | 106..916 | 4055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:03:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9336986..9337223 | 330..567 | 1190 | 100 | Plus |
3L | 28110227 | 3L | 9336712..9336933 | 108..329 | 1110 | 100 | Plus |
3L | 28110227 | 3L | 9337454..9337660 | 566..772 | 1035 | 100 | Plus |
3L | 28110227 | 3L | 9337723..9337869 | 770..916 | 735 | 100 | Plus |
3L | 28110227 | 3L | 9336292..9336384 | 16..108 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:03:51 has no hits.
BS16829.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:44 Download gff for
BS16829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RF | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:48 Download gff for
BS16829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RF | 234..1141 | 10..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:51:29 Download gff for
BS16829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RF | 240..1139 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:44 Download gff for
BS16829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RF | 234..1141 | 10..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:24 Download gff for
BS16829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RF | 240..1139 | 17..916 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:10:24 Download gff for
BS16829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9337726..9337869 | 773..916 | 100 | | Plus |
3L | 9336986..9337221 | 330..565 | 100 | -> | Plus |
3L | 9336293..9336383 | 17..107 | 100 | -> | Plus |
3L | 9336712..9336933 | 108..329 | 100 | -> | Plus |
3L | 9337454..9337660 | 566..772 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:51:29 Download gff for
BS16829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9329393..9329483 | 17..107 | 100 | -> | Plus |
arm_3L | 9329812..9330033 | 108..329 | 100 | -> | Plus |
arm_3L | 9330086..9330321 | 330..565 | 100 | -> | Plus |
arm_3L | 9330554..9330760 | 566..772 | 100 | -> | Plus |
arm_3L | 9330826..9330969 | 773..916 | 100 | | Plus |
BS16829.pep Sequence
Translation from 16 to 915
> BS16829.pep
MKLLLKVHSERTARRRRTPEPSLAHSRDSSRINSNNANGNGNANRSRDKS
PSRRVTRNTILLITLILLVLATGLIVLYVELNRPKPELPSNKAIYFGNNY
DHQTFPNLGNGHLVVDREQWGASKNSHGLTIPLKRPIPYVLITHIGVQSL
PCDNIYKCSIKMRTIQDSAIAEKGLPDIQSNFYVSEEGNIYVGRGWDWAN
TYANQTLAITFMGDYGRFKPGPKQLEGVQFLLAHAVANRNIDVDYKLVAQ
NQTKVTRSPGAYVYQEIRNWPHFYGCGMDEAPACGIELGMKTESWDAKQ*
BS16829.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LA-PF | 299 | CG32042-PF | 1..299 | 1..299 | 1588 | 100 | Plus |
PGRP-LA-PE | 368 | CG32042-PE | 92..368 | 24..299 | 1435 | 97.5 | Plus |
PGRP-LA-PG | 138 | CG32042-PG | 1..138 | 162..299 | 749 | 100 | Plus |
PGRP-LA-PC | 138 | CG32042-PC | 1..138 | 162..299 | 749 | 100 | Plus |
PGRP-LA-PD | 173 | CG32042-PD | 92..173 | 24..104 | 373 | 91.5 | Plus |