Clone Sequence Records
BS16831.3prime Sequence
738 bp (738 high quality bases) assembled on 2007-05-15
> BS16831.3prime
ATGGTCTAGAAAGCTTTCAGAGTTTGTTCTGTACTTGGTTTTCCAGCGGA
GGTAGTTTTTCATAAATCCATTGCTGCAGATCCGTGATGGAGGCAGTTTT
CAGTTCGTGCAGTGTGTTCCTCAATGGATGAAATGTGCCCTTGACACCCA
GTTTCGTTAGGTTCTCGAAGGTTTCCAGACCCCAGTCCTTAGGTACCAGA
GTATCGCGTTCCCCGTGATACATTCGCAGCTCGGGAAAAGATTCGTCTTT
GCCGTTGGCCAGGGAATCATAGACAACGGAGCCGCGGTTCAGGAACGAGG
AATGTGCGAATACGCCGGCCAAGCTGCGTCTCAAATGGTAGCCCGTGTGC
AGAGCCAAGGCTCCGCCCATCGAGAATCCGCCCACAACGATCCTGTTCAG
CGGTATGCCGCTGGCCACCTCCTCGTCGATCAGCTGATTGACCGCATCAT
AACACTGGGACATGCTCTTCTTGCTTTCCGATGCGGCAATGTTCACGGAC
TTGCGGTCAAACCACACGTTGGATAGTTCCCCGTCCAGCGGGGTGTACTT
CTGTTTGGGAGCCGTGGGATATATTATCTTTATGTGCGGGTACTCCAGAT
TCCGGCCGATAAGGAAGCGCACCCATTCCAGAACATTGGGGCCGGTGTCG
CCGGATCCGTGGAAGAATATCACGGAGGCTGTGTGTTTGCCAGTGGCATT
GACCGTTGTCAAGGCTGGCTTCATGTCGACTGATAACT
BS16831.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:24:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6567-PA | 708 | CG6567-RA | 1..708 | 724..17 | 3540 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:35:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6567-RB | 1017 | CG6567-RB | 91..798 | 724..17 | 3540 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:35:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10853654..10854361 | 17..724 | 3540 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:35:31 has no hits.
BS16831.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:24:30 Download gff for
BS16831.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6567-PA | 1..708 | 17..724 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:16:06 Download gff for
BS16831.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6567-RB | 91..798 | 17..724 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:40 Download gff for
BS16831.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6567-RB | 91..798 | 17..724 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:40 Download gff for
BS16831.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10853654..10854361 | 17..724 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:16:06 Download gff for
BS16831.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6679376..6680083 | 17..724 | 100 | | Plus |
BS16831.5prime Sequence
738 bp (738 high quality bases) assembled on 2007-05-15
> BS16831.5prime
GAAGTTATCAGTCGACATGAAGCCAGCCTTGACAACGGTCAATGCCACTG
GCAAACACACAGCCTCCGTGATATTCTTCCACGGATCCGGCGACACCGGC
CCCAATGTTCTGGAATGGGTGCGCTTCCTTATCGGCCGGAATCTGGAGTA
CCCGCACATAAAGATAATATATCCCACGGCTCCCAAACAGAAGTACACCC
CGCTGGACGGGGAACTATCCAACGTGTGGTTTGACCGCAAGTCCGTGAAC
ATTGCCGCATCGGAAAGCAAGAAGAGCATGTCCCAGTGTTATGATGCGGT
CAATCAGCTGATCGACGAGGAGGTGGCCAGCGGCATACCGCTGAACAGGA
TCGTTGTGGGCGGATTCTCGATGGGCGGAGCCTTGGCTCTGCACACGGGC
TACCATTTGAGACGCAGCTTGGCCGGCGTATTCGCACATTCCTCGTTCCT
GAACCGCGGCTCCGTTGTCTATGATTCCCTGGCCAACGGCAAAGACGAAT
CTTTTCCCGAGCTGCGAATGTATCACGGGGAACGCGATACTCTGGTACCT
AAGGACTGGGGTCTGGAAACCTTCGAGAACCTAACGAAACTGGGTGTCAA
GGGCACATTTCATCCATTGAGGAACACACTGCACGAACTGAAAACTGCCT
CCATCACGGATCTGCAGCAATGGATTTATGAAAAACTACCTCCGCTGGAA
AACCAAGTACAGAACAAACTCTGAAAGCTTTCTAGACC
BS16831.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:19:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6567-PA | 708 | CG6567-RA | 1..708 | 17..724 | 3540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:57:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6567-RB | 1017 | CG6567-RB | 91..798 | 17..724 | 3540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:57:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10853654..10854361 | 724..17 | 3540 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:57:06 has no hits.
BS16831.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:19:12 Download gff for
BS16831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6567-PA | 1..708 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:02:35 Download gff for
BS16831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6567-RB | 91..798 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:27:51 Download gff for
BS16831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6567-RB | 91..798 | 17..724 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:27:51 Download gff for
BS16831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10853654..10854361 | 17..724 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:02:35 Download gff for
BS16831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6679376..6680083 | 17..724 | 100 | | Minus |
BS16831.complete Sequence
740 bp assembled on 2007-05-07
GenBank Submission: FJ638200
> BS16831.complete
GAAGTTATCAGTCGACATGAAGCCAGCCTTGACAACGGTCAATGCCACTG
GCAAACACACAGCCTCCGTGATATTCTTCCACGGATCCGGCGACACCGGC
CCCAATGTTCTGGAATGGGTGCGCTTCCTTATCGGCCGGAATCTGGAGTA
CCCGCACATAAAGATAATATATCCCACGGCTCCCAAACAGAAGTACACCC
CGCTGGACGGGGAACTATCCAACGTGTGGTTTGACCGCAAGTCCGTGAAC
ATTGCCGCATCGGAAAGCAAGAAGAGCATGTCCCAGTGTTATGATGCGGT
CAATCAGCTGATCGACGAGGAGGTGGCCAGCGGCATACCGCTGAACAGGA
TCGTTGTGGGCGGATTCTCGATGGGCGGAGCCTTGGCTCTGCACACGGGC
TACCATTTGAGACGCAGCTTGGCCGGCGTATTCGCACATTCCTCGTTCCT
GAACCGCGGCTCCGTTGTCTATGATTCCCTGGCCAACGGCAAAGACGAAT
CTTTTCCCGAGCTGCGAATGTATCACGGGGAACGCGATACTCTGGTACCT
AAGGACTGGGGTCTGGAAACCTTCGAGAACCTAACGAAACTGGGTGTCAA
GGGCACATTTCATCCATTGAGGAACACACTGCACGAACTGAAAACTGCCT
CCATCACGGATCTGCAGCAATGGATTTATGAAAAACTACCTCCGCTGGAA
AACCAAGTACAGAACAAACTCTGAAAGCTTTCTAGACCAT
BS16831.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:49:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6567-RB | 708 | CG6567-PB | 1..708 | 17..724 | 3540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:49:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6567-RB | 1017 | CG6567-RB | 91..798 | 17..724 | 3540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:49:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10853654..10854361 | 724..17 | 3540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:49:15 has no hits.
BS16831.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:44 Download gff for
BS16831.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6567-RB | 1..708 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:43 Download gff for
BS16831.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6567-RB | 62..769 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:56 Download gff for
BS16831.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6567-RB | 91..797 | 17..723 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:44 Download gff for
BS16831.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6567-RB | 62..769 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:00 Download gff for
BS16831.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6567-RB | 91..797 | 17..723 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:00 Download gff for
BS16831.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10853655..10854361 | 17..723 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:56 Download gff for
BS16831.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6679377..6680083 | 17..723 | 100 | | Minus |
BS16831.pep Sequence
Translation from 16 to 723
> BS16831.pep
MKPALTTVNATGKHTASVIFFHGSGDTGPNVLEWVRFLIGRNLEYPHIKI
IYPTAPKQKYTPLDGELSNVWFDRKSVNIAASESKKSMSQCYDAVNQLID
EEVASGIPLNRIVVGGFSMGGALALHTGYHLRRSLAGVFAHSSFLNRGSV
VYDSLANGKDESFPELRMYHGERDTLVPKDWGLETFENLTKLGVKGTFHP
LRNTLHELKTASITDLQQWIYEKLPPLENQVQNKL*
BS16831.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6567-PB | 235 | CG6567-PB | 1..235 | 1..235 | 1238 | 100 | Plus |
| CG18815-PC | 216 | CG18815-PC | 7..211 | 8..220 | 267 | 34.3 | Plus |
| CG18815-PB | 216 | CG18815-PB | 7..211 | 8..220 | 267 | 34.3 | Plus |
| CG18815-PA | 216 | CG18815-PA | 7..211 | 8..220 | 267 | 34.3 | Plus |
| CG18815-PD | 221 | CG18815-PD | 7..211 | 8..220 | 267 | 34.3 | Plus |
