Clone BS16832 Report

Search the DGRC for BS16832

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:168
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptCG11961-RB
Protein status:BS16832.pep: full length peptide match
Sequenced Size:2636

Clone Sequence Records

BS16832.complete Sequence

2636 bp assembled on 2009-12-07

GenBank Submission: KX803372

> BS16832.complete
GAAGTTATCAGTCGACATGAGCAGCGAAACGGAGGAGAAAAGATCGAAGG
CTCAGCCCAATGGCTGTGAGCGAGCATTCGTCCAGGGAAACAAGATTAAG
TGGTTCTGGGCACCCGCCTTCTTTGGATTCTGGCTGCTGCTCTATGTGAC
CATCTCGATACCCGCCTGCCACCGCCTTCCCCGCCCACTGACCATTCAGG
ATGAGGAAACGCATCCCGACCAGTTCATCGCCGAGCGCGCAGAGAAAAAT
CTACGGGAGCTAGTGAGCCTGGGACCCCGAGTGGTGGGCAGTCGACAGAA
TGAGATGGCCGCTTTGAAGATGCTCTCCCAGAAGATGCAAAAAATTCGAT
CCGGCACTGCCAACGATATTGAAGTGGATGTTCAGGTGGCATCCGGTAGC
TATGTTCACTGGTCCATGGTCAATATGTACCAGAGCATTCAGAATATTGT
CGTTAAGATCAGTCCCAAGAACACGAACAGCACTACTTATCTTCTGGTAA
ACAGTCACTATGATTCCGTGCCGGCGGGACCTGGTGCTGGTGATGATGGT
TCCATGGTGGCCACTATGATGGAGGTACTCCGTGTGCTGGCCAAGTCCGA
TAAGCCACTAAAGAACCCTGTGGTATTCCTGTTCAATGGTGCCGAGGAAA
ATCCCCTTCAGGCCTCGCATGCCTTCATCACCCAGCACAAGTGGGCCAAA
TATTGCAAAGCCCTTATCAATCTCGATTCCTGCGGAAATGGCGGTCGAGA
GATCCTCTTCCAATCGGGACCCAATCATCCCTGGCTAATGAAGAACTACC
GACGTGCCATCAAGCACCCGTATGCTTCTACAATGGGCGAGGAGCTGTTC
CAGCACAATTTCATTCCCTCTGACACGGACTTCCGCATTTTCCGTGACCA
TGGATCGGTTCCCGGCTTGGATATGGCCTACACCTACAACGGATTTGTCT
ACCACACGCGACACGACAAGGCAGAGATCTTTCCCAGGGGTAGTTTCCAG
CATACTGGCGATAATCTGCTTGCTTTGGTCCGACAGATTGCAAACTCTCC
GGAGATTGAGAATTCAGCGAAATACGCCAAAGGTCACACCATCTATTTCG
ATGTTATGGGTTGGTTTCTGGTTTTCTACACCGAAACCGAAGGCGTTATC
TTGAACGTCATCGTCTCCTTGGTATCCATCGGGATTTGTGGCTACGCTTT
TAAGCTGATGTCGGTCAACTCGGGCATAAAGCTCGAAAAGATCCTCAAGA
AGGTGGGGCACACACTCCTCGTACAGATTCTATCTGTTGTTGTGGGAGCC
ATCCTGCCAGTTTTGCTCGGTCTGTTCATGGATGCGGTGCATTTGCCTCT
GTCGTGGTTCTCGAACTCCTGGCTCATCCTGGGTCTCTACTTCACCACTT
TCTTCTTCGGTTTGGCCATAGTGCCTGCCTTGTACTTCCACTGGACCAAG
CGTGATAAGCTTCCCATTGGTCAGCGGGTTCAGCTTTTGCTGCACTGCCA
CTGCCTACTTTTATCTGTTCTCACCCTGATCTTCACCATCTGTGGAATTC
GCTCTGTTTTTGTTTTGATGCTCAGTTGCTTGTTCTATACAGTGGGCTTG
ATCATTAATATTGCCACCAAACTGCACACCAAAGATGTCGCATGGGTCAT
TCCGCACATTGTTTGCACTGTGCCACCATTTGTATTCTTTGCATATTTCT
CGCACGGATTCTTCACCACGTTCATTCCAATGTTTGGTCGTTTTGGAGAG
AACCTTAATCCGGATTTGGCGGTGGCTGTTTTCAGTGTCGCTGTGGGCTT
CCTCTGCTGCGGTTTCATTATCCCTGTTCTGCAGTTGTTCAACAAATCGA
AGACCATCATCTGCGGCCTGATGGGCATCACGTTATTGTGCTTCATTATT
GCAATGACACCAATTGGATTCCCCTATCGCCCAGAAACGAATGTCCAGCG
TTTCGCTGTCCTGCACACCAAGCGTACCTTCCACGACGCTCAAAACAAAG
TGCGCCGTCAGGAATCTGGTTACTTCATTATGCCCCAGGACAGACGCACT
TACACCGTGAAAAATGCTGTTATCAACATGACACTGGCCCAAAGAATTGG
ATCCGATTGCGATAAGGAAATTAATTGCGGATTGCCCCTATATAATCAGC
GTTGGCACAAGACCAGAAAGAACAGTTTATGGATACCCGCATCGGAACCT
GTTCTTGGCGAGAATGTGCCAACCGTTTTATTGCTCTCCAAGAATACAGT
GTCGCCCACCAAAATTCGCTATGAAATGCAGCTAAGTGGACCCAATCACA
TGGCCCTCTTTATACAGCCCTTGAACGGAGCAAAGATGATGGACTGGTCC
TTCCATCAGGCACCCTTACGTCTGAGCTTTGAGCCACCTTACTTCATCTA
CTTCTCGTGGGGTGTCAATGGAGATCCACTTAAATTCTGGCTAGAACTAG
AGAAACCCAACGGAAATTGGAACTCTTCTACTCTGGAACTTGGGCTCGGA
GGCCATTGGAACCATCACAAGGAACTAATAACGCCTGACTTTAAGAAGTT
CCTCGACAGTTTCCCCCATTATGTGGATGCCACACCCTGGCCAGCTTCAT
TCGAGAGCCGGATCTTCTAGAAGCTTTCTAGACCAT

BS16832.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:45:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG11961-RB 2604 CG11961-PB 1..2604 17..2620 13020 100 Plus
CG11961-RC 2676 CG11961-PC 104..2676 48..2620 12865 100 Plus
CG11961-RA 2676 CG11961-PA 104..2676 48..2620 12865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG11961-RB 2960 CG11961-RB 275..2879 17..2621 13025 100 Plus
CG11961-RC 3589 CG11961-RC 184..2757 48..2621 12870 100 Plus
CG11961-RA 2838 CG11961-RA 184..2757 48..2621 12870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19359184..19359844 48..708 3305 100 Plus
2R 25286936 2R 19360328..19360713 1069..1454 1930 100 Plus
2R 25286936 2R 19359909..19360269 709..1069 1805 100 Plus
2R 25286936 2R 19361009..19361339 1633..1963 1655 100 Plus
2R 25286936 2R 19361719..19361914 2165..2360 980 100 Plus
2R 25286936 2R 19360767..19360947 1454..1634 905 100 Plus
2R 25286936 2R 19362122..19362292 2451..2621 855 100 Plus
2R 25286936 2R 19361556..19361658 2064..2166 515 100 Plus
2R 25286936 2R 19361396..19361496 1963..2063 505 100 Plus
2R 25286936 2R 19361967..19362062 2357..2452 480 100 Plus
2R 25286936 2R 19382142..19382450 400..708 255 72.2 Plus
2R 25286936 2R 19370207..19370289 445..363 235 85.5 Minus
2R 25286936 2R 12356466..12356532 630..696 230 89.6 Plus
2R 25286936 2R 19365185..19365275 838..928 215 82.4 Plus
Blast to na_te.dros performed on 2014-11-28 01:45:51 has no hits.

BS16832.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:12 Download gff for BS16832.complete
Subject Subject Range Query Range Percent Splice Strand
CG11961-RB 1..2604 17..2620 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:06 Download gff for BS16832.complete
Subject Subject Range Query Range Percent Splice Strand
CG11961-RB 76..2679 17..2620 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:04 Download gff for BS16832.complete
Subject Subject Range Query Range Percent Splice Strand
CG11961-RB 275..2878 17..2620 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:42 Download gff for BS16832.complete
Subject Subject Range Query Range Percent Splice Strand
CG11961-RB 76..2679 17..2620 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:17 Download gff for BS16832.complete
Subject Subject Range Query Range Percent Splice Strand
CG11961-RB 275..2878 17..2620 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:17 Download gff for BS16832.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19362124..19362291 2453..2620 100   Plus
2R 19357806..19357838 17..49 100 -> Plus
2R 19359186..19359844 50..708 100 -> Plus
2R 19359909..19360269 709..1069 100 -> Plus
2R 19360329..19360712 1070..1453 100 -> Plus
2R 19360767..19360947 1454..1634 100 -> Plus
2R 19361011..19361339 1635..1963 100 -> Plus
2R 19361397..19361496 1964..2063 100 -> Plus
2R 19361556..19361658 2064..2166 100 -> Plus
2R 19361721..19361913 2167..2359 100 -> Plus
2R 19361970..19362062 2360..2452 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:04 Download gff for BS16832.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15248272..15248452 1454..1634 100 -> Plus
arm_2R 15245311..15245343 17..49 100 -> Plus
arm_2R 15246691..15247349 50..708 100 -> Plus
arm_2R 15247414..15247774 709..1069 100 -> Plus
arm_2R 15247834..15248217 1070..1453 100 -> Plus
arm_2R 15248516..15248844 1635..1963 100 -> Plus
arm_2R 15248902..15249001 1964..2063 100 -> Plus
arm_2R 15249061..15249163 2064..2166 100 -> Plus
arm_2R 15249226..15249418 2167..2359 100 -> Plus
arm_2R 15249475..15249567 2360..2452 100 -> Plus
arm_2R 15249629..15249796 2453..2620 100   Plus

BS16832.3prime Sequence

851 bp (794 high quality bases) assembled on 2007-05-15

> BS16832.3prime
ATGGTCTAGAAAGCTTCTAGAAGATCCGGCTCTCGAATGAAGCTGGCCAG
GGTGTGGCATCCACATAATGGGGGAAACTGTCGAGGAACTTCTTAAAGTC
AGGCGTTATTAGTTCCTTGTGATGGTTCCAATGGCCTCCGAGCCCAAGTT
CCAGAGTAGAAGAGTTCCAATTTCCGTTGGGTTTCTCTAGTTCTAGCCAG
AATTTAAGTGGATCTCCATTGACACCCCACGAGAAGTAGATGAAGTAAGG
TGGCTCAAAGCTCAGACGTAAGGGTGCCTGATGGAAGGACCAGTCCATCA
TCTTTGCTCCGTTCAAGGGCTGTATAAAGAGGGCCATGTGATTGGGTCCA
CTTAGCTGCATTTCATAGCGAATTTTGGTGGGCGACACTGTATTCTTGGA
GAGCAATAAAACGGTTGGCACATTCTCGCCAAGAACAGGTTCCGATGCGG
GTATCCATAAACTGTTCTTTCTGGTCTTGTGCCAACGCTGATTATATAGG
GGCAATCCGCAATTAATTTCCTTATCGCAATCGGATCCAATTCTTTGGGC
CAGTGTCATGTTGATAACAGCATTTTTCACGGTGTAAGTGCGTCTGTCCT
GGGGCATAATGAAGTAACCAGATTCCTGACGGCGCACTTTGTTTTGAGCG
TCGTGGAAGGTACGCTTGGTGTGCAGGACAGCGAAACGCTGGACATTCGT
TTCTGGGCGATAGGGGAATCCAATTGGTGTCATTGCAATAATGAAGCACA
ATAACGTGATGCCCATCAGGCCGCAGATGATGGTCTTCGATTTGTTGAAA
CACTGCAGAACAGGGATAATGAAACCGCAGCAGAGGAAGCCCACAGCGAC
A

BS16832.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:24:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG11961-PB 2604 CG11961-RB 1770..2604 851..17 4125 99.7 Minus
CG11961-PA 2676 CG11961-RA 1842..2676 851..17 4125 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11961-RC 3589 CG11961-RC 1922..2757 851..16 4150 99.8 Minus
CG11961-RA 2838 CG11961-RA 1922..2757 851..16 4150 99.8 Minus
CG11961-RB 2960 CG11961-RB 2044..2879 851..16 4150 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19361719..19361914 472..277 980 100 Minus
2R 25286936 2R 19361162..19361339 851..674 860 98.9 Minus
2R 25286936 2R 19362122..19362292 186..16 855 100 Minus
2R 25286936 2R 19361556..19361658 573..471 515 100 Minus
2R 25286936 2R 19361396..19361496 674..574 505 100 Minus
2R 25286936 2R 19361967..19362062 280..185 480 100 Minus
Blast to na_te.dros performed on 2015-02-11 03:43:29 has no hits.

BS16832.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:24:36 Download gff for BS16832.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11961-PA 1843..2676 17..850 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:26:16 Download gff for BS16832.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11961-RB 2045..2890 7..850 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:29:09 Download gff for BS16832.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11961-RB 2045..2890 7..850 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:29:09 Download gff for BS16832.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19362124..19362303 7..184 98   Minus
2R 19361163..19361339 674..850 98 -> Minus
2R 19361397..19361496 574..673 100 -> Minus
2R 19361556..19361658 471..573 100 -> Minus
2R 19361721..19361913 278..470 100 -> Minus
2R 19361970..19362062 185..277 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:26:16 Download gff for BS16832.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15248668..15248844 674..850 98 -> Minus
arm_2R 15248902..15249001 574..673 100 -> Minus
arm_2R 15249061..15249163 471..573 100 -> Minus
arm_2R 15249226..15249418 278..470 100 -> Minus
arm_2R 15249475..15249567 185..277 100 -> Minus
arm_2R 15249629..15249808 7..184 98   Minus

BS16832.5prime Sequence

889 bp (806 high quality bases) assembled on 2007-05-15

> BS16832.5prime
GAAGTTATCAGTCGACATGAGCAGCGAAACGGAGGAGAAAAGATCGAAGG
CTCAGCCCAATGGCTGTGAGCGAGCATTCGTCCAGGGAAACAAGATTAAG
TGGTTCTGGGCACCCGCCTTCTTTGGATTCTGGCTGCTGCTCTATGTGAC
CATCTCGATACCCGCCTGCCACCGCCTTCCCCGCCCACTGACCATTCAGG
ATGAGGAAACGCATCCCGACCAGTTCATCGCCGAGCGCGCAGAGAAAAAT
CTACGGGAGCTAGTGAGCCTGGGACCCCGAGTGGTGGGCAGTCGACAGAA
TGAGATGGCCGCTTTGAAGATGCTCTCCCAGAAGATGCAAAAAATTCGAT
CCGGCACTGCCAACGATATTGAAGTGGATGTTCAGGTGGCATCCGGTAGC
TATGTTCACTGGTCCATGGTCAATATGTACCAGAGCATTCAGAATATTGT
CGTTAAGATCAGTCCCAAGAACACGAACAGCACTACTTATCTTCTGGTAA
ACAGTCACTATGATTCCGTGCCGGCGGGACCTGGTGCTGGTGATGATGGT
TCCATGGTGGCCACTATGATGGAGGTACTCCGTGTGCTGGCCAAGTCCGA
TAAGCCACTAAAGAACCCTGTGGTATTCCTGTTCAATGGTGCCGAGGAAA
ATCCCCTTCAGGCCTCGCATGCCTTCATCACCCAGCACAAGTGGGCCAAA
TATTGCAAAGCCCTTATCAATCTCGATTCCTGCGGAAATGGCGGTCGAGA
GATCCTCTTCCAATCGGGACCCAATCATCCCTGGCTAATGAAGAACTACC
GACGTGCCATNCAGCACCCGTATGCTTCTACAATGGGCGAGGAGCTGTTC
CAGCACAATTTCATTCCCTCTGACACGGACTTCCGCATT

BS16832.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:19:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG11961-PB 2604 CG11961-RB 1..873 17..889 4321 99.7 Plus
CG11961-PA 2676 CG11961-RA 104..945 48..889 4166 99.7 Plus
CG30049-PA 2289 CG30049-RA 446..512 630..696 160 89.5 Plus
CG9416-PA 2586 CG9416-RA 339..408 376..445 150 88.5 Plus
CG10073-PA 2622 CG10073-RA 422..458 414..450 135 94.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG11961-RB 2960 CG11961-RB 275..1147 17..889 4339 99.8 Plus
CG11961-RC 3589 CG11961-RC 184..1025 48..889 4184 99.8 Plus
CG11961-RA 2838 CG11961-RA 184..1025 48..889 4184 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19359184..19359844 48..708 3305 100 Plus
2R 25286936 2R 19359909..19360089 709..889 879 98.9 Plus
2R 25286936 2R 19382142..19382450 400..708 255 72.2 Plus
2R 25286936 2R 19370207..19370289 445..363 235 85.5 Minus
2R 25286936 2R 12356466..12356532 630..696 230 89.6 Plus
Blast to na_te.dros performed on 2015-02-13 06:59:34 has no hits.

BS16832.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:19:16 Download gff for BS16832.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11961-PB 1..873 17..889 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:47:54 Download gff for BS16832.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11961-RB 270..1147 8..889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:34:17 Download gff for BS16832.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11961-RB 270..1147 8..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:34:17 Download gff for BS16832.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19359186..19359844 50..708 100 -> Plus
2R 19359909..19360089 709..889 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:47:54 Download gff for BS16832.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15246691..15247349 50..708 100 -> Plus
arm_2R 15247414..15247594 709..889 98   Plus

BS16832.pep Sequence

Translation from 16 to 2619

> BS16832.pep
MSSETEEKRSKAQPNGCERAFVQGNKIKWFWAPAFFGFWLLLYVTISIPA
CHRLPRPLTIQDEETHPDQFIAERAEKNLRELVSLGPRVVGSRQNEMAAL
KMLSQKMQKIRSGTANDIEVDVQVASGSYVHWSMVNMYQSIQNIVVKISP
KNTNSTTYLLVNSHYDSVPAGPGAGDDGSMVATMMEVLRVLAKSDKPLKN
PVVFLFNGAEENPLQASHAFITQHKWAKYCKALINLDSCGNGGREILFQS
GPNHPWLMKNYRRAIKHPYASTMGEELFQHNFIPSDTDFRIFRDHGSVPG
LDMAYTYNGFVYHTRHDKAEIFPRGSFQHTGDNLLALVRQIANSPEIENS
AKYAKGHTIYFDVMGWFLVFYTETEGVILNVIVSLVSIGICGYAFKLMSV
NSGIKLEKILKKVGHTLLVQILSVVVGAILPVLLGLFMDAVHLPLSWFSN
SWLILGLYFTTFFFGLAIVPALYFHWTKRDKLPIGQRVQLLLHCHCLLLS
VLTLIFTICGIRSVFVLMLSCLFYTVGLIINIATKLHTKDVAWVIPHIVC
TVPPFVFFAYFSHGFFTTFIPMFGRFGENLNPDLAVAVFSVAVGFLCCGF
IIPVLQLFNKSKTIICGLMGITLLCFIIAMTPIGFPYRPETNVQRFAVLH
TKRTFHDAQNKVRRQESGYFIMPQDRRTYTVKNAVINMTLAQRIGSDCDK
EINCGLPLYNQRWHKTRKNSLWIPASEPVLGENVPTVLLLSKNTVSPTKI
RYEMQLSGPNHMALFIQPLNGAKMMDWSFHQAPLRLSFEPPYFIYFSWGV
NGDPLKFWLELEKPNGNWNSSTLELGLGGHWNHHKELITPDFKKFLDSFP
HYVDATPWPASFESRIF*

BS16832.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG11961-PB 867 CG11961-PB 1..867 1..867 4633 100 Plus
CG11961-PC 891 CG11961-PC 35..891 11..867 4582 99.9 Plus
CG11961-PA 891 CG11961-PA 35..891 11..867 4582 99.9 Plus
CG10062-PA 862 CG10062-PA 18..862 26..867 2266 49.1 Plus
CG10062-PC 868 CG10062-PC 18..868 26..867 2249 48.7 Plus