Clone Sequence Records
BS16833.3prime Sequence
900 bp (806 high quality bases) assembled on 2007-05-15
> BS16833.3prime
ATGGTCTAGAAAGCTTTTAGGCGACTGGGGCGAAGCCAATGCGGTTGTTG
CCCAAATCGAACTCGGTGTAGTACTGGCCAATGAAGACATCGCCCAGAAT
CCAGAAGTCGGTGCCCATGTACTCGAAGGCGGACATACAGTTGCCGTCCG
ACTGGATGATGTAGGCCGAGGGCTTCAGGACGAAGTTGGTGCCACCGATG
TTGAAGGTGACATCGGGCAGGGAGCTGACGCTTGAGCAGTCCAGATAGCC
ATCCTCACCCACGTTCAGGATCTCGGAGAGGGTAATGTAAGCATTGTAGG
GAGCCACGATCAGGGAGGTGCCGGTATCGGCAATAGCCTGGCAATCATCA
CACAGCGAGTAACCGTCAATGGAGGATCCAGCCATGGTGAACTGCCAGTA
GCCCTGCTCCGAGATGGGAACGTAGGTCAGAGCGCCAGAGTACAGAGAGG
CATCGGAGCCACCGAAGATGAGTTCACCACCCATAGTGGAGGTGCCATCG
CGGGCCAGATAGAACGAGAAGACGGAGTTGTCGACCAGACCCTGGGACAC
CATGTTGTAGAACGGAGGAGCCACACCATCCACGGCCAGGGACTCATAGG
CCATACCGAGAATGCCATCGAAGTTGGCATCGTTGAAGTTGGTGCCCGGC
TCGTTGGTGGATTCAGCAAAGGTCTGGCTCTGGATGCTCAGGCCATTGAC
GTCGACGGTATCGGTGGACAGGTAGCCAGTTAGGCTGCCAGTGCCATACT
GGATGGAGAAGGATTCGCCGTTGGCCACGTAGGTGGAGCTGGCGCTGGAG
TCGTACTGGTTGTGGGTCAGGCAGGCATCGCTCTTGCANGTGTTCGATGG
CACCCACAGGTTCGAGGAGCCTGAGTCGAACAGAACCTTGAAGCTCTGAC
BS16833.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:24:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13095-PA | 1119 | CG13095-RA | 237..1119 | 899..17 | 4396 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:36:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bace-RB | 1415 | CG13095-RB | 276..1158 | 899..17 | 4404 | 99.9 | Minus |
Bace-RA | 1200 | CG13095-RA | 276..1158 | 899..17 | 4404 | 99.9 | Minus |
CG33128-RA | 1387 | CG33128-RA | 476..621 | 814..669 | 205 | 76.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:35:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8495150..8496032 | 17..899 | 4404 | 99.9 | Plus |
2L | 23513712 | 2L | 1494545..1494690 | 814..669 | 205 | 76 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:35:58 has no hits.
BS16833.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:24:46 Download gff for
BS16833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13095-PA | 235..1119 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:16:11 Download gff for
BS16833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bace-RA | 274..1158 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:33:07 Download gff for
BS16833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bace-RA | 274..1158 | 17..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:07 Download gff for
BS16833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8495150..8496032 | 17..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:16:11 Download gff for
BS16833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8495150..8496032 | 17..900 | 99 | | Plus |
BS16833.5prime Sequence
872 bp (870 high quality bases) assembled on 2007-05-15
> BS16833.5prime
GAAGTTATCAGTCGACATGTTCAAGACCATCGCTGTAGTAGTGCTCCTGG
CAGCCCTGGCCAGTGCCGAGCTCCATCGCGTGCCGATCCTCAAGGAGCAG
AACTTTGTGAAGACGCGTCAGAATGTTTTGGCCGAGAAATCCTATCTGCG
CACCAAGTACCAGCTGCCCTCGCTTCGCAGCGTGGATGAGGAACAGCTGT
CCAACTCGATGAATATGGCTTACTACGGAGCCATCTCCATCGGAACTCCC
GCTCAGAGCTTCAAGGTTCTGTTCGACTCAGGCTCCTCGAACCTGTGGGT
GCCATCGAACACCTGCAAGAGCGATGCCTGCCTGACCCACAACCAGTACG
ACTCCAGCGCCAGCTCCACCTACGTGGCCAACGGCGAATCCTTCTCCATC
CAGTATGGCACTGGCAGCCTAACTGGCTACCTGTCCACCGATACCGTCGA
CGTCAATGGCCTGAGCATCCAGAGCCAGACCTTTGCTGAATCCACCAACG
AGCCGGGCACCAACTTCAACGATGCCAACTTCGATGGCATTCTCGGTATG
GCCTATGAGTCCCTGGCCGTGGATGGTGTGGCTCCTCCGTTCTACAACAT
GGTGTCCCAGGGTCTGGTCGACAACTCCGTCTTCTCGTTCTATCTGGCCC
GCGATGGCACCTCCACTATGGGTGGTGAACTCATCTTCGGTGGCTCCGAT
GCCTCTCTGTACTCTGGCGCTCTGACCTACGTTCCCATCTCGGAGCAGGG
CTACTGGCAGTTCACCATGGCTGGATCCTCCATTGACGGTTACTCGCTGT
GTGATGATTGCCAGGCTATTGCCGATACCGGCACCTCCCTGATCGTGGCT
CCCTACAATGCTTACATTACCC
BS16833.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:19:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13095-PA | 1119 | CG13095-RA | 1..856 | 17..872 | 4280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:20:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bace-RB | 1415 | CG13095-RB | 40..895 | 17..872 | 4280 | 100 | Plus |
Bace-RA | 1200 | CG13095-RA | 40..895 | 17..872 | 4280 | 100 | Plus |
CG33128-RA | 1387 | CG33128-RA | 476..621 | 338..483 | 205 | 76.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:20:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8495413..8496268 | 872..17 | 4280 | 100 | Minus |
2L | 23513712 | 2L | 1494545..1494690 | 338..483 | 205 | 76 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:20:14 has no hits.
BS16833.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:19:25 Download gff for
BS16833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13095-PA | 1..856 | 17..872 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:55:25 Download gff for
BS16833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bace-RA | 35..895 | 10..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:48:38 Download gff for
BS16833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bace-RA | 35..895 | 10..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:48:38 Download gff for
BS16833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8495413..8496273 | 10..872 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:55:25 Download gff for
BS16833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8495413..8496273 | 10..872 | 99 | | Minus |
BS16833.complete Sequence
1151 bp assembled on 2007-05-07
GenBank Submission: FJ638201
> BS16833.complete
GAAGTTATCAGTCGACATGTTCAAGACCATCGCTGTAGTAGTGCTCCTGG
CAGCCCTGGCCAGTGCCGAGCTCCATCGCGTGCCGATCCTCAAGGAGCAG
AACTTTGTGAAGACGCGTCAGAATGTTTTGGCCGAGAAATCCTATCTGCG
CACCAAGTACCAGCTGCCCTCGCTTCGCAGCGTGGATGAGGAACAGCTGT
CCAACTCGATGAATATGGCTTACTACGGAGCCATCTCCATCGGAACTCCC
GCTCAGAGCTTCAAGGTTCTGTTCGACTCAGGCTCCTCGAACCTGTGGGT
GCCATCGAACACCTGCAAGAGCGATGCCTGCCTGACCCACAACCAGTACG
ACTCCAGCGCCAGCTCCACCTACGTGGCCAACGGCGAATCCTTCTCCATC
CAGTATGGCACTGGCAGCCTAACTGGCTACCTGTCCACCGATACCGTCGA
CGTCAATGGCCTGAGCATCCAGAGCCAGACCTTTGCTGAATCCACCAACG
AGCCGGGCACCAACTTCAACGATGCCAACTTCGATGGCATTCTCGGTATG
GCCTATGAGTCCCTGGCCGTGGATGGTGTGGCTCCTCCGTTCTACAACAT
GGTGTCCCAGGGTCTGGTCGACAACTCCGTCTTCTCGTTCTATCTGGCCC
GCGATGGCACCTCCACTATGGGTGGTGAACTCATCTTCGGTGGCTCCGAT
GCCTCTCTGTACTCTGGCGCTCTGACCTACGTTCCCATCTCGGAGCAGGG
CTACTGGCAGTTCACCATGGCTGGATCCTCCATTGACGGTTACTCGCTGT
GTGATGATTGCCAGGCTATTGCCGATACCGGCACCTCCCTGATCGTGGCT
CCCTACAATGCTTACATTACCCTCTCCGAGATCCTGAACGTGGGTGAGGA
TGGCTATCTGGACTGCTCAAGCGTCAGCTCCCTGCCCGATGTCACCTTCA
ACATCGGTGGCACCAACTTCGTCCTGAAGCCCTCGGCCTACATCATCCAG
TCGGACGGCAACTGTATGTCCGCCTTCGAGTACATGGGCACCGACTTCTG
GATTCTGGGCGATGTCTTCATTGGCCAGTACTACACCGAGTTCGATTTGG
GCAACAACCGCATTGGCTTCGCCCCAGTCGCCTAAAAGCTTTCTAGACCA
T
BS16833.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:54:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bace-RB | 1119 | CG13095-PB | 1..1119 | 17..1135 | 5595 | 100 | Plus |
Bace-RA | 1119 | CG13095-PA | 1..1119 | 17..1135 | 5595 | 100 | Plus |
CG33128-RA | 1218 | CG33128-PA | 400..545 | 338..483 | 205 | 76 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:54:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bace-RB | 1415 | CG13095-RB | 40..1158 | 17..1135 | 5595 | 100 | Plus |
Bace-RA | 1200 | CG13095-RA | 40..1158 | 17..1135 | 5595 | 100 | Plus |
CG33128-RA | 1387 | CG33128-RA | 476..621 | 338..483 | 205 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:54:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8495150..8496268 | 1135..17 | 5595 | 100 | Minus |
2L | 23513712 | 2L | 1494545..1494690 | 338..483 | 205 | 76 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:54:43 has no hits.
BS16833.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:46 Download gff for
BS16833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13095-RA | 1..1119 | 17..1135 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:50 Download gff for
BS16833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13095-RA | 32..1155 | 10..1135 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:31 Download gff for
BS16833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bace-RA | 45..1156 | 22..1133 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:46 Download gff for
BS16833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13095-RA | 32..1155 | 10..1135 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:55 Download gff for
BS16833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bace-RA | 45..1156 | 22..1133 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:55 Download gff for
BS16833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8495152..8496263 | 22..1133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:31 Download gff for
BS16833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8495152..8496263 | 22..1133 | 100 | | Minus |
BS16833.pep Sequence
Translation from 16 to 1134
> BS16833.pep
MFKTIAVVVLLAALASAELHRVPILKEQNFVKTRQNVLAEKSYLRTKYQL
PSLRSVDEEQLSNSMNMAYYGAISIGTPAQSFKVLFDSGSSNLWVPSNTC
KSDACLTHNQYDSSASSTYVANGESFSIQYGTGSLTGYLSTDTVDVNGLS
IQSQTFAESTNEPGTNFNDANFDGILGMAYESLAVDGVAPPFYNMVSQGL
VDNSVFSFYLARDGTSTMGGELIFGGSDASLYSGALTYVPISEQGYWQFT
MAGSSIDGYSLCDDCQAIADTGTSLIVAPYNAYITLSEILNVGEDGYLDC
SSVSSLPDVTFNIGGTNFVLKPSAYIIQSDGNCMSAFEYMGTDFWILGDV
FIGQYYTEFDLGNNRIGFAPVA*
BS16833.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bace-PB | 372 | CG13095-PB | 1..372 | 1..372 | 1923 | 100 | Plus |
Bace-PA | 372 | CG13095-PA | 1..372 | 1..372 | 1923 | 100 | Plus |
CG33128-PA | 405 | CG33128-PA | 6..405 | 7..372 | 1034 | 52 | Plus |
CG17134-PA | 391 | CG17134-PA | 2..389 | 3..372 | 1023 | 54.4 | Plus |
pcl-PA | 407 | CG13374-PA | 12..379 | 5..371 | 959 | 51.8 | Plus |