Clone BS16833 Report

Search the DGRC for BS16833

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:168
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptBace-RA
Protein status:BS16833.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16833.3prime Sequence

900 bp (806 high quality bases) assembled on 2007-05-15

> BS16833.3prime
ATGGTCTAGAAAGCTTTTAGGCGACTGGGGCGAAGCCAATGCGGTTGTTG
CCCAAATCGAACTCGGTGTAGTACTGGCCAATGAAGACATCGCCCAGAAT
CCAGAAGTCGGTGCCCATGTACTCGAAGGCGGACATACAGTTGCCGTCCG
ACTGGATGATGTAGGCCGAGGGCTTCAGGACGAAGTTGGTGCCACCGATG
TTGAAGGTGACATCGGGCAGGGAGCTGACGCTTGAGCAGTCCAGATAGCC
ATCCTCACCCACGTTCAGGATCTCGGAGAGGGTAATGTAAGCATTGTAGG
GAGCCACGATCAGGGAGGTGCCGGTATCGGCAATAGCCTGGCAATCATCA
CACAGCGAGTAACCGTCAATGGAGGATCCAGCCATGGTGAACTGCCAGTA
GCCCTGCTCCGAGATGGGAACGTAGGTCAGAGCGCCAGAGTACAGAGAGG
CATCGGAGCCACCGAAGATGAGTTCACCACCCATAGTGGAGGTGCCATCG
CGGGCCAGATAGAACGAGAAGACGGAGTTGTCGACCAGACCCTGGGACAC
CATGTTGTAGAACGGAGGAGCCACACCATCCACGGCCAGGGACTCATAGG
CCATACCGAGAATGCCATCGAAGTTGGCATCGTTGAAGTTGGTGCCCGGC
TCGTTGGTGGATTCAGCAAAGGTCTGGCTCTGGATGCTCAGGCCATTGAC
GTCGACGGTATCGGTGGACAGGTAGCCAGTTAGGCTGCCAGTGCCATACT
GGATGGAGAAGGATTCGCCGTTGGCCACGTAGGTGGAGCTGGCGCTGGAG
TCGTACTGGTTGTGGGTCAGGCAGGCATCGCTCTTGCANGTGTTCGATGG
CACCCACAGGTTCGAGGAGCCTGAGTCGAACAGAACCTTGAAGCTCTGAC

BS16833.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:24:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG13095-PA 1119 CG13095-RA 237..1119 899..17 4396 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
Bace-RB 1415 CG13095-RB 276..1158 899..17 4404 99.9 Minus
Bace-RA 1200 CG13095-RA 276..1158 899..17 4404 99.9 Minus
CG33128-RA 1387 CG33128-RA 476..621 814..669 205 76.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8495150..8496032 17..899 4404 99.9 Plus
2L 23513712 2L 1494545..1494690 814..669 205 76 Minus
Blast to na_te.dros performed on 2015-02-10 17:35:58 has no hits.

BS16833.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:24:46 Download gff for BS16833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13095-PA 235..1119 17..900 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:16:11 Download gff for BS16833.3prime
Subject Subject Range Query Range Percent Splice Strand
Bace-RA 274..1158 17..900 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:33:07 Download gff for BS16833.3prime
Subject Subject Range Query Range Percent Splice Strand
Bace-RA 274..1158 17..900 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:07 Download gff for BS16833.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8495150..8496032 17..900 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:16:11 Download gff for BS16833.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8495150..8496032 17..900 99   Plus

BS16833.5prime Sequence

872 bp (870 high quality bases) assembled on 2007-05-15

> BS16833.5prime
GAAGTTATCAGTCGACATGTTCAAGACCATCGCTGTAGTAGTGCTCCTGG
CAGCCCTGGCCAGTGCCGAGCTCCATCGCGTGCCGATCCTCAAGGAGCAG
AACTTTGTGAAGACGCGTCAGAATGTTTTGGCCGAGAAATCCTATCTGCG
CACCAAGTACCAGCTGCCCTCGCTTCGCAGCGTGGATGAGGAACAGCTGT
CCAACTCGATGAATATGGCTTACTACGGAGCCATCTCCATCGGAACTCCC
GCTCAGAGCTTCAAGGTTCTGTTCGACTCAGGCTCCTCGAACCTGTGGGT
GCCATCGAACACCTGCAAGAGCGATGCCTGCCTGACCCACAACCAGTACG
ACTCCAGCGCCAGCTCCACCTACGTGGCCAACGGCGAATCCTTCTCCATC
CAGTATGGCACTGGCAGCCTAACTGGCTACCTGTCCACCGATACCGTCGA
CGTCAATGGCCTGAGCATCCAGAGCCAGACCTTTGCTGAATCCACCAACG
AGCCGGGCACCAACTTCAACGATGCCAACTTCGATGGCATTCTCGGTATG
GCCTATGAGTCCCTGGCCGTGGATGGTGTGGCTCCTCCGTTCTACAACAT
GGTGTCCCAGGGTCTGGTCGACAACTCCGTCTTCTCGTTCTATCTGGCCC
GCGATGGCACCTCCACTATGGGTGGTGAACTCATCTTCGGTGGCTCCGAT
GCCTCTCTGTACTCTGGCGCTCTGACCTACGTTCCCATCTCGGAGCAGGG
CTACTGGCAGTTCACCATGGCTGGATCCTCCATTGACGGTTACTCGCTGT
GTGATGATTGCCAGGCTATTGCCGATACCGGCACCTCCCTGATCGTGGCT
CCCTACAATGCTTACATTACCC

BS16833.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG13095-PA 1119 CG13095-RA 1..856 17..872 4280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
Bace-RB 1415 CG13095-RB 40..895 17..872 4280 100 Plus
Bace-RA 1200 CG13095-RA 40..895 17..872 4280 100 Plus
CG33128-RA 1387 CG33128-RA 476..621 338..483 205 76.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8495413..8496268 872..17 4280 100 Minus
2L 23513712 2L 1494545..1494690 338..483 205 76 Plus
Blast to na_te.dros performed on 2015-02-13 00:20:14 has no hits.

BS16833.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:19:25 Download gff for BS16833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13095-PA 1..856 17..872 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:55:25 Download gff for BS16833.5prime
Subject Subject Range Query Range Percent Splice Strand
Bace-RA 35..895 10..872 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:48:38 Download gff for BS16833.5prime
Subject Subject Range Query Range Percent Splice Strand
Bace-RA 35..895 10..872 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:48:38 Download gff for BS16833.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8495413..8496273 10..872 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:55:25 Download gff for BS16833.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8495413..8496273 10..872 99   Minus

BS16833.complete Sequence

1151 bp assembled on 2007-05-07

GenBank Submission: FJ638201

> BS16833.complete
GAAGTTATCAGTCGACATGTTCAAGACCATCGCTGTAGTAGTGCTCCTGG
CAGCCCTGGCCAGTGCCGAGCTCCATCGCGTGCCGATCCTCAAGGAGCAG
AACTTTGTGAAGACGCGTCAGAATGTTTTGGCCGAGAAATCCTATCTGCG
CACCAAGTACCAGCTGCCCTCGCTTCGCAGCGTGGATGAGGAACAGCTGT
CCAACTCGATGAATATGGCTTACTACGGAGCCATCTCCATCGGAACTCCC
GCTCAGAGCTTCAAGGTTCTGTTCGACTCAGGCTCCTCGAACCTGTGGGT
GCCATCGAACACCTGCAAGAGCGATGCCTGCCTGACCCACAACCAGTACG
ACTCCAGCGCCAGCTCCACCTACGTGGCCAACGGCGAATCCTTCTCCATC
CAGTATGGCACTGGCAGCCTAACTGGCTACCTGTCCACCGATACCGTCGA
CGTCAATGGCCTGAGCATCCAGAGCCAGACCTTTGCTGAATCCACCAACG
AGCCGGGCACCAACTTCAACGATGCCAACTTCGATGGCATTCTCGGTATG
GCCTATGAGTCCCTGGCCGTGGATGGTGTGGCTCCTCCGTTCTACAACAT
GGTGTCCCAGGGTCTGGTCGACAACTCCGTCTTCTCGTTCTATCTGGCCC
GCGATGGCACCTCCACTATGGGTGGTGAACTCATCTTCGGTGGCTCCGAT
GCCTCTCTGTACTCTGGCGCTCTGACCTACGTTCCCATCTCGGAGCAGGG
CTACTGGCAGTTCACCATGGCTGGATCCTCCATTGACGGTTACTCGCTGT
GTGATGATTGCCAGGCTATTGCCGATACCGGCACCTCCCTGATCGTGGCT
CCCTACAATGCTTACATTACCCTCTCCGAGATCCTGAACGTGGGTGAGGA
TGGCTATCTGGACTGCTCAAGCGTCAGCTCCCTGCCCGATGTCACCTTCA
ACATCGGTGGCACCAACTTCGTCCTGAAGCCCTCGGCCTACATCATCCAG
TCGGACGGCAACTGTATGTCCGCCTTCGAGTACATGGGCACCGACTTCTG
GATTCTGGGCGATGTCTTCATTGGCCAGTACTACACCGAGTTCGATTTGG
GCAACAACCGCATTGGCTTCGCCCCAGTCGCCTAAAAGCTTTCTAGACCA
T

BS16833.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:54:43
Subject Length Description Subject Range Query Range Score Percent Strand
Bace-RB 1119 CG13095-PB 1..1119 17..1135 5595 100 Plus
Bace-RA 1119 CG13095-PA 1..1119 17..1135 5595 100 Plus
CG33128-RA 1218 CG33128-PA 400..545 338..483 205 76 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
Bace-RB 1415 CG13095-RB 40..1158 17..1135 5595 100 Plus
Bace-RA 1200 CG13095-RA 40..1158 17..1135 5595 100 Plus
CG33128-RA 1387 CG33128-RA 476..621 338..483 205 76 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:54:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8495150..8496268 1135..17 5595 100 Minus
2L 23513712 2L 1494545..1494690 338..483 205 76 Plus
Blast to na_te.dros performed on 2014-11-27 16:54:43 has no hits.

BS16833.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:46 Download gff for BS16833.complete
Subject Subject Range Query Range Percent Splice Strand
CG13095-RA 1..1119 17..1135 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:50 Download gff for BS16833.complete
Subject Subject Range Query Range Percent Splice Strand
CG13095-RA 32..1155 10..1135 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:31 Download gff for BS16833.complete
Subject Subject Range Query Range Percent Splice Strand
Bace-RA 45..1156 22..1133 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:46 Download gff for BS16833.complete
Subject Subject Range Query Range Percent Splice Strand
CG13095-RA 32..1155 10..1135 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:55 Download gff for BS16833.complete
Subject Subject Range Query Range Percent Splice Strand
Bace-RA 45..1156 22..1133 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:55 Download gff for BS16833.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8495152..8496263 22..1133 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:31 Download gff for BS16833.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8495152..8496263 22..1133 100   Minus

BS16833.pep Sequence

Translation from 16 to 1134

> BS16833.pep
MFKTIAVVVLLAALASAELHRVPILKEQNFVKTRQNVLAEKSYLRTKYQL
PSLRSVDEEQLSNSMNMAYYGAISIGTPAQSFKVLFDSGSSNLWVPSNTC
KSDACLTHNQYDSSASSTYVANGESFSIQYGTGSLTGYLSTDTVDVNGLS
IQSQTFAESTNEPGTNFNDANFDGILGMAYESLAVDGVAPPFYNMVSQGL
VDNSVFSFYLARDGTSTMGGELIFGGSDASLYSGALTYVPISEQGYWQFT
MAGSSIDGYSLCDDCQAIADTGTSLIVAPYNAYITLSEILNVGEDGYLDC
SSVSSLPDVTFNIGGTNFVLKPSAYIIQSDGNCMSAFEYMGTDFWILGDV
FIGQYYTEFDLGNNRIGFAPVA*

BS16833.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
Bace-PB 372 CG13095-PB 1..372 1..372 1923 100 Plus
Bace-PA 372 CG13095-PA 1..372 1..372 1923 100 Plus
CG33128-PA 405 CG33128-PA 6..405 7..372 1034 52 Plus
CG17134-PA 391 CG17134-PA 2..389 3..372 1023 54.4 Plus
pcl-PA 407 CG13374-PA 12..379 5..371 959 51.8 Plus