Clone Sequence Records
BS16835.complete Sequence
1739 bp assembled on 2009-12-07
GenBank Submission: KX801883
> BS16835.complete
GAAGTTATCAGTCGACATGAACGATCCAAACAAGGCTATTAGTGTGAATC
TTTCCTCGCTGCTCAGCCTGAAGGCGGAATTGCTGCGGAAACAGCATGAG
GTGAGGGTGGCCAAGGCCACAAAGGCATCCGCCGCCGACTTTCGCCCCAC
CAAGAGCGCCGGCAACAAGGAAAAGTCCAGTGATCAGGGCTACAAAAAGG
TCGCAAGCAGCGACGATGGTGCCAAAGTGTACGAGGCCGAGGACCATGCT
CAGTTGGAGAAGTCACGGCGCATCCTGGAGGCCAAGAGTAAGTTCTACGA
CCGGATGAGCCGCAATGGAGGCAGCCTCAACTCCGATGACAATTGCCTGG
TGATGTTCAACCGCAAAAAACAGGAGGCAGATCGGGAGCCGGAGCAGTGC
ACGCAGAGACGTGAGTCCCGCCAGCGACTGAGTAGCAGCAGCAGTTCCAG
CCAAGATGAAGAAGGCCACGACGATTTAGAGGTGGAGTACGTTGACTGCC
TGGGACGCACCAGAAAGTGTTTGCGGAAGGACTTGAAGGAGGCCAAGAGA
CGCGACAAGCAACTTGCCGAGAGCATGCCGGAGCGCCTAGATCAGACCAA
GGCCAACTGGATGATAAATACCAAAGGAAGCCGCGAGCTGAATAGTAACC
ACAACAGCGATGATGAGTCCTTCATTGGGCCGCGTCCAACGGAGAGCGTC
TTCAGCGAAGCCCTGTCCACGATGACGAAGCACGACGAACAGCGCATGAA
CTGGGAGCGCAAGGAGCAGGAGAATTTTGAAAAGCCTGATGTCCACTACC
AGGATGTCTTCTTTGACGAAGCGCGCACCCACGGTGTTGGCTACTATGCC
TTCTCCACGGACGAAGACGAGCGCCGACAGCAGCAGTTGGATCTGGAAAA
GGCACGCCAAGCAACGAAGGCTAAGCAGATGCGACGAGATGAATTGCGCG
CCCAACGAGACCGTCTCGTGGCGGATCGCGTGCTGGCCGCCAAAAACAGG
ATTCGAGAACGCAACGGCTTGCCACCCATCAGCGAGGAAGACTACCTGCG
GGAGGAACAGCAAAAGAAGGACGAATTGGCGAAAGAAGAAGCAGAGCTAA
ATCGGGCGGAACAAGAGAGGAGGGCAGCCATCGAGCGTAAAAAAGAAAAG
GAGGAGGCTGAACTGGAAGAATTGCGCAAGGAGCACGTACGCGATTGGGA
CAAGAACAAACCTGGTGTGCGCAAGCTAGCAGACTCGGAGAGCGCAGAAC
CACCTGAGGAGGAGTGGAAGTACAAGGCCGAACGCCTGCCAATGTCCCAG
GAGGAGTGGAATGAGAAGCAGCGTGCCCAGCGGCATGCAGAATTTGCGCC
CATGCCAGAGCCTGTCCCCCTTAAGCGCAGTAACTTCAGCAGCATGCCAC
CGCCTATGGTGTGGAACCGTGCCCAAGAGCCGCAGTTCCACAATTTTCAC
AGCACAAAGGAGGAAAAGAAGTTCCAACGACGGAGCTACAGTGCGAATAA
CGAAGACGAAGCTGATGAACAACCGAGCACATCCAGTCGTGGCATGGGTG
CCGCTATTCCTCCGCCTGCTGGATTGGATGACAGAGCTCCACCAGCGAAA
AAGCCCAAGTCTCAGGATGACCTGGAGCGCTCCATCGAAGCGGGTCTTAG
ATTTCTGCGTGAGAACTGCGACAAGGGCGTCCTGGGAAACAAGGCCACCT
GGACGGCCAAGGCGGATTACTGAAAGCTTTCTAGACCAT
BS16835.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:55:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7183-RB | 1707 | CG7183-PB | 1..1707 | 17..1723 | 8535 | 100 | Plus |
| CG7183-RA | 1707 | CG7183-PA | 1..1707 | 17..1723 | 8535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:55:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7183-RB | 2121 | CG7183-RB | 45..1751 | 17..1723 | 8535 | 100 | Plus |
| CG7183-RA | 2367 | CG7183-RA | 291..1997 | 17..1723 | 8535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:54:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18218517..18220223 | 1723..17 | 8535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:54:59 has no hits.
BS16835.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:07 Download gff for
BS16835.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7183-RA | 291..1996 | 17..1722 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:01:16 Download gff for
BS16835.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7183-RA | 291..1996 | 17..1722 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:59:47 Download gff for
BS16835.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7183-RA | 291..1996 | 17..1722 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:45 Download gff for
BS16835.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7183-RA | 291..1996 | 17..1722 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:45 Download gff for
BS16835.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18218518..18220223 | 17..1722 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:01:16 Download gff for
BS16835.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14044240..14045945 | 17..1722 | 100 | | Minus |
BS16835.3prime Sequence
830 bp (826 high quality bases) assembled on 2007-05-15
> BS16835.3prime
ATGGTCTAGAAAGCTTTCAGTAATCCGCCTTGGCCGTCCAGGTGGCCTTG
TTTCCCAGGACGCCCTTGTCGCAGTTCTCACGCAGAAATCTAAGACCCGC
TTCGATGGAGCGCTCCAGGTCATCCTGAGACTTGGGCTTTTTCGCTGGTG
GAGCTCTGTCATCCAATCCAGCAGGCGGAGGAATAGCGGCACCCATGCCA
CGACTGGATGTGCTCGGTTGTTCATCAGCTTCGTCTTCGTTATTCGCACT
GTAGCTCCGTCGTTGGAACTTCTTTTCCTCCTTTGTGCTGTGAAAATTGT
GGAACTGCGGCTCTTGGGCACGGTTCCACACCATAGGCGGTGGCATGCTG
CTGAAGTTACTGCGCTTAAGGGGGACAGGCTCTGGCATGGGCGCAAATTC
TGCATGCCGCTGGGCACGCTGCTTCTCATTCCACTCCTCCTGGGACATTG
GCAGGCGTTCGGCCTTGTACTTCCACTCCTCCTCAGGTGGTTCTGCGCTC
TCCGAGTCTGCTAGCTTGCGCACACCAGGTTTGTTCTTGTCCCAATCGCG
TACGTGCTCCTTGCGCAATTCTTCCAGTTCAGCCTCCTCCTTTTCTTTTT
TACGCTCGATGGCTGCCCTCCTCTCTTGTTCCGCCCGATTTAGCTCTGCT
TCTTCTTTCGCCAATTCGTCCTTCTTTTGCTGTTCCTCCCGCAGGTAGTC
TTCCTCGCTGATGGGTGGCAAGCCGTTGCGTTCTCGAATCCTGTTTTTGG
CGGCCAGCACGCGATCCGCCACGAGACGGTCTCGTTGGGCGCGCAATTCA
TCTCGTCGCATCTGCTTAGCCTTCGTTGCT
BS16835.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:27:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7183-PA | 1707 | CG7183-RA | 894..1707 | 830..17 | 4070 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:44:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7183-RB | 2121 | CG7183-RB | 938..1751 | 830..17 | 4070 | 100 | Minus |
| CG7183-RA | 2367 | CG7183-RA | 1184..1997 | 830..17 | 4070 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:44:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18218517..18219330 | 17..830 | 4070 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:44:02 has no hits.
BS16835.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:27:44 Download gff for
BS16835.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7183-PA | 894..1707 | 17..830 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:48:28 Download gff for
BS16835.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7183-RA | 1184..2000 | 11..830 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:17:27 Download gff for
BS16835.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7183-RA | 1184..2000 | 11..830 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:17:27 Download gff for
BS16835.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18218514..18219330 | 11..830 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:48:28 Download gff for
BS16835.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14044236..14045052 | 11..830 | 99 | | Plus |
BS16835.5prime Sequence
861 bp (766 high quality bases) assembled on 2007-05-15
> BS16835.5prime
GAAGTTATCAGTCGACATGAACGATCCAAACAAGGCTATTAGTGTGAATC
TTTCCTCGCTGCTCAGCCTGAAGGCGGAATTGCTGCGGAAACAGCATGAG
GTGAGGGTGGCCAAGGCCACAAAGGCATCCGCCGCCGACTTTCGCCCCAC
CAAGAGCGCCGGCAACAAGGAAAAGTCCAGTGATCAGGGCTACAAAAAGG
TCGCAAGCAGCGACGATGGTGCCAAAGTGTACGAGGCCGAGGACCATGCT
CAGTTGGAGAAGTCACGGCGCATCCTGGAGGCCAAGAGTAAGTTCTACGA
CCGGATGAGCCGCAATGGAGGCAGCCTCAACTCCGATGACAATTGCCTGG
TGATGTTCAACCGCAAAAAACAGGAGGCAGATCGGGAGCCGGAGCAGTGC
ACGCAGAGACGTGAGTCCCGCCAGCGACTGAGTAGCAGCAGCAGTTCCAG
CCAAGATGAAGAAGGCCACGACGATTTAGAGGTGGAGTACGTTGACTGCC
TGGGACGCACCAGAAAGTGTTTGCGGAAGGACTTGAAGGAGGCCAAGAGA
CGCGACAAGCAACTTGCCGAGAGCATGCCGGAGCGCCTAGATCAGACCAA
GGCCAACTGGATGATAAATACCAAAGGAAGCCGCGAGCTGAATAGTAACC
ACAACAGCGATGATGAGTCCTTCATTGGGCCGCGTCCAACGGAGAGCGTC
TTCAGCGAAGCCCTGTCCACGATGACGAAGCACGACGAACAGCGCATGAA
CTGGGAGCGCAAGGAGCANGAGAATTTTGANNAGCCTGATGTCCACTACC
AGGATGTCTTCTTTGACGAAGCGCGCACCCACGGTGTTGGCTACTATGCC
TTCTCCCACGA
BS16835.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:21:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7183-PA | 1707 | CG7183-RA | 1..840 | 17..856 | 4143 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:30:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7183-RB | 2121 | CG7183-RB | 45..884 | 17..856 | 4167 | 99.6 | Plus |
| CG7183-RA | 2367 | CG7183-RA | 291..1130 | 17..856 | 4167 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:30:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18219384..18220223 | 856..17 | 4167 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:30:19 has no hits.
BS16835.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:21:57 Download gff for
BS16835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7183-PA | 1..843 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:49:26 Download gff for
BS16835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7183-RA | 291..1133 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:11:56 Download gff for
BS16835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7183-RA | 291..1133 | 17..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:11:56 Download gff for
BS16835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18219381..18220223 | 17..860 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:49:26 Download gff for
BS16835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14045103..14045945 | 17..860 | 99 | | Minus |
BS16835.pep Sequence
Translation from 16 to 1722
> BS16835.pep
MNDPNKAISVNLSSLLSLKAELLRKQHEVRVAKATKASAADFRPTKSAGN
KEKSSDQGYKKVASSDDGAKVYEAEDHAQLEKSRRILEAKSKFYDRMSRN
GGSLNSDDNCLVMFNRKKQEADREPEQCTQRRESRQRLSSSSSSSQDEEG
HDDLEVEYVDCLGRTRKCLRKDLKEAKRRDKQLAESMPERLDQTKANWMI
NTKGSRELNSNHNSDDESFIGPRPTESVFSEALSTMTKHDEQRMNWERKE
QENFEKPDVHYQDVFFDEARTHGVGYYAFSTDEDERRQQQLDLEKARQAT
KAKQMRRDELRAQRDRLVADRVLAAKNRIRERNGLPPISEEDYLREEQQK
KDELAKEEAELNRAEQERRAAIERKKEKEEAELEELRKEHVRDWDKNKPG
VRKLADSESAEPPEEEWKYKAERLPMSQEEWNEKQRAQRHAEFAPMPEPV
PLKRSNFSSMPPPMVWNRAQEPQFHNFHSTKEEKKFQRRSYSANNEDEAD
EQPSTSSRGMGAAIPPPAGLDDRAPPAKKPKSQDDLERSIEAGLRFLREN
CDKGVLGNKATWTAKADY*
BS16835.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:38:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7183-PB | 568 | CG7183-PB | 1..568 | 1..568 | 2952 | 100 | Plus |
| CG7183-PA | 568 | CG7183-PA | 1..568 | 1..568 | 2952 | 100 | Plus |
| CG2839-PA | 826 | CG2839-PA | 273..747 | 21..502 | 208 | 21 | Plus |
| CG2839-PA | 826 | CG2839-PA | 313..721 | 19..438 | 201 | 20.8 | Plus |
| CG2839-PA | 826 | CG2839-PA | 355..738 | 19..422 | 182 | 21.5 | Plus |
| rgn-PD | 800 | CG6014-PD | 432..796 | 46..452 | 162 | 23 | Plus |
| rgn-PA | 800 | CG6014-PA | 432..796 | 46..452 | 162 | 23 | Plus |
