Clone Sequence Records
BS16839.complete Sequence
2372 bp assembled on 2009-12-07
GenBank Submission: KX800649
> BS16839.complete
GAAGTTATCAGTCGACATGACCCTGACCACAACGACCACTGCCTCATCAG
CCGAGAGCCAAGCGAAAATGGACGTAAAGGGCGGCGCACTTCCCGGCGAA
GAGAACCTGCCCACATCCGAAATGGATCTGCTGGCCAAACTGGAGGCGGC
CAATAAGCTCATCGAGAGCGATGCCAAGTCCCTCAACTCTCTGCATTCCA
CGCACAGTCGCAAGAACTCGGATACGAGTCAAATCAGTCTTACGTCGAGT
GGAAATTCGGTGGCCGAAGAGGACATCTGGACGACGTGGGCCACCATCCT
CAATGACTGGGAGGGAGCACTGAAACGAAAGAATCCCTGCGTCAGTGAGC
TGGTGCGCCGTGGAATTCCACACCACTTCCGAGCGATCGTATGGCAGCAG
CTAAGTGGAGCGTCCGACGGCGACAAAAAACAGTATGCGGAGTACATCAA
GGCGACCAGTGCCTGCGAGAAGGTCATACGGCGTGACATTGCCCGCACCT
ATCCCGAGGTGGAGTTCTTCAAGGAGAAGGATGGACCCGGACAGGAGGCC
CTGTTCAATGTGATCAAGGCATATTCTCTGCACGATCGCGAGGTCGGCTA
CTGCCAGGGCTCGGGATTCATTGTGGGCCTGCTGCTGATGCAAATGCCCG
AGGAGGAGGCATTCGCTGTGCTCGTGCAGATCATGCAGCAGCATCGGATG
CGGCACATGTTTAAGCCCTCCATGTCGGAGTTGGGCTTGTGCATGTACCA
GCTGGAGAATCTGGTGCAGGAGCAAATACCCGACATGCACATTCACTTCC
AGCAGCAGGGCTTCCAGACGACCATGTACGCCTCCAGTTGGTTCCTCACC
CTATACACGACCACTCTGAATGTCAATCTAAGTTGTCGCATCATGGACGT
CTTCCTCAGCGAGGGCATGGAGTTCATCTTTAAGGTGGCCTTGGCCCTGC
TGCTCACCGGCAAGGATACGTTGCTCTGCCTGGACATGGAGGCCATGCTT
AAGTTCTTCCAAAAGGAGCTGCCCGGTCGCGTGGAGGCGGATGTCGAGGG
CTTCTTCAATCTAGCCTACTCCATAAAGCTGAATACTAAGCGTATGAAGA
AGATGGAAAAGGAGTACCAGGACCTCAAGAAGAAGGAGCAGGAGGAGATG
GCCGAGCTGCGGCGACTGAGACGCGAGAACTGCCTGCTGAAGCAGCGCAA
CGAGCTGCTGGAGGCCGAGAGTGCCGAACTGGCCGATCGCCTGGTCCGTG
GTCAGGTCTCCCGAGCTGAGGAGGAGGAAACTAGCTATGCCATTCAGACG
GAGCTAATGCAGCTGCGCCGATCATACTTGGAGGTCTCGCATCAGCTGGA
AAACGCCAACGAGGAGGTGCGCGGCCTGAGTCTACGGCTGCAGGAGAATA
ACGTATCCATCGACAGCAATAACTCCCGGCAATCGTCCATTGACGAGCTC
TGCATGAAGGAGGAGGCGCTGAAGCAGCGCGACGAGATGGTCTCCTGTTT
GCTGGAGGAACTGGTGAAGGTGCGTCAGGGACTGGCCGAAAGCGAGGATC
AGATCAGGAACCTCAAGGCCAAGGTCGAGGAGCTGGAGGAGGATAAGAAG
ACGCTGCGGGAAACGACGCCAGACAATTCGGTGGCTCATCTGCAGGATGA
ACTGATTGCTAGTAAACTTCGCGAGGCTGAGGCCTCACTTTCGCTAAAGG
ATCTCAAGCAGAGGGTGCAGGAGCTGAGCAGCCAGTGGCAGCGTCAATTG
GCCGAGAATCAGCGCAGCGAAAGCGAACGCACCACCAACGCTGTGGACTC
TACGCCCAAAAAGCTGTTGACCAACTTCTTTGACAGCTCCAAGAGTAGCG
AGCACACGCAGAAGCTCGAGGAGGAGCTGATGACCACGCGCATACGCGAG
ATGGAGACGCTTACCGAGCTCAAGGAGCTGCGACTTAAGGTCATGGAGCT
GGAGACGCAGGTCCAGGTGTCCACCAATCAGCTGAGGCGGCAGGACGAGG
AGCACAAGAAGCTCAAGGAGGAGCTCGAAATGGCCGTGACCCGGGAGAAG
GACATGTCCAACAAGGCGCGTGAACAGCAACACAGATACTCGGATCTGGA
ATCTCGCATGAAGGATGAGCTGATGAATGTGAAAATCAAATTCACCGAGC
AAAGCCAAACGGTGGCTGAACTGAAACAGGAAATTTCCCGTCTTGAGACC
AAGAACTCGGAAATGCTCGCCGAGGGCGAACTGCGCGCGAATCTGGATGA
TTCGGACAAGGTGCGCGACCTGCAGGACAGGCTGGCCGACATGAAGGCGG
AGTATCCCACGCCAATAACCAGCCCCGACACTGAGCCGTGGAAATGGATA
AGCTAAAAGCTTTCTAGACCAT
BS16839.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:38:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Evi5-RB | 2340 | CG11727-PB | 1..2340 | 17..2356 | 11700 | 100 | Plus |
Evi5-RA | 2424 | CG11727-PA | 1..2286 | 17..2302 | 11430 | 100 | Plus |
Evi5-RC | 2322 | CG11727-PC | 1..2322 | 17..2356 | 11395 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Evi5-RB | 3177 | CG11727-RB | 756..3096 | 17..2357 | 11705 | 100 | Plus |
Evi5-RA | 5936 | CG11727-RA | 756..3041 | 17..2302 | 11430 | 100 | Plus |
Evi5-RC | 3159 | CG11727-RC | 756..3078 | 17..2357 | 11400 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11437194..11438239 | 1294..249 | 5185 | 99.7 | Minus |
X | 23542271 | X | 11435729..11436396 | 2085..1418 | 3340 | 100 | Minus |
X | 23542271 | X | 11438661..11438894 | 250..17 | 1170 | 100 | Minus |
X | 23542271 | X | 11435549..11435668 | 2203..2084 | 600 | 100 | Minus |
X | 23542271 | X | 11437023..11437139 | 1399..1283 | 585 | 100 | Minus |
X | 23542271 | X | 11435383..11435483 | 2302..2202 | 505 | 100 | Minus |
X | 23542271 | X | 11434760..11434816 | 2357..2301 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:38:48 has no hits.
BS16839.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:13 Download gff for
BS16839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11727-RB | 1..2340 | 17..2356 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:11 Download gff for
BS16839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11727-RB | 720..3057 | 17..2354 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:38 Download gff for
BS16839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Evi5-RB | 756..3093 | 17..2354 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:05 Download gff for
BS16839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11727-RB | 720..3057 | 17..2354 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:31 Download gff for
BS16839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Evi5-RB | 756..3093 | 17..2354 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:31 Download gff for
BS16839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11435549..11435666 | 2086..2203 | 100 | <- | Minus |
X | 11434763..11434814 | 2303..2354 | 100 | <- | Minus |
X | 11435383..11435481 | 2204..2302 | 100 | <- | Minus |
X | 11435729..11436396 | 1418..2085 | 100 | <- | Minus |
X | 11436775..11436792 | 1400..1417 | 100 | <- | Minus |
X | 11437023..11437137 | 1285..1399 | 100 | <- | Minus |
X | 11437204..11438239 | 249..1284 | 100 | <- | Minus |
X | 11438663..11438894 | 17..248 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:38 Download gff for
BS16839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11328796..11328847 | 2303..2354 | 100 | <- | Minus |
arm_X | 11329416..11329514 | 2204..2302 | 100 | <- | Minus |
arm_X | 11329582..11329699 | 2086..2203 | 100 | <- | Minus |
arm_X | 11329762..11330429 | 1418..2085 | 100 | <- | Minus |
arm_X | 11330808..11330825 | 1400..1417 | 100 | <- | Minus |
arm_X | 11331056..11331170 | 1285..1399 | 100 | <- | Minus |
arm_X | 11331237..11332272 | 249..1284 | 100 | <- | Minus |
arm_X | 11332696..11332927 | 17..248 | 100 | | Minus |
BS16839.3prime Sequence
900 bp (847 high quality bases) assembled on 2007-05-15
> BS16839.3prime
ATGGTCTAGAAAGCTTTTAGCTTATCCATTTCCACGGCTCAGTGTCGGGG
CTGGTTATTGGCGTGGGATACTCCGCCTTCATGTCGGCCAGCCTGTCCTG
CAGGTCGCGCACCTTGTCCGAATCATCCAGATTCGCGCGCAGTTCGCCCT
CGGCGAGCATTTCCGAGTTCTTGGTCTCAAGACGGGAAATTTCCTGTTTC
AGTTCAGCCACCGTTTGGCTTTGCTCGGTGAATTTGATTTTCACATTCAT
CAGCTCATCCTTCATGCGAGATTCCAGATCCGAGTATCTGTGTTGCTGTT
CACGCGCCTTGTTGGACATGTCCTTCTCCCGGGTCACGGCCATTTCGAGC
TCCTCCTTGAGCTTCTTGTGCTCCTCGTCCTGCCGCCTCAGCTGATTGGT
GGACACCTGGACCTGCGTCTCCAGCTCCATGACCTTAAGTCGCAGCTCCT
TGAGCTCGGTAAGCGTCTCCATCTCGCGTATGCGCGTGGTCATCAGCTCC
TCCTCGAGCTTCTGCGTGTGCTCGCTACTCTTGGAGCTGTCAAAGAAGTT
GGTCAACAGCTTTTTGGGCGTAGAGTCCACAGCGTTGGTGGTGCGTTCGC
TTTCGCTGCGCTGATTCTCGGCCAATTGACGCTGCCACTGGCTGCTCAGC
TCCTGCACCCTCTGCTTGAGATCCTTTAGCGAAAGTGAGGCCTCAGCCTC
GCGAAGTTTACTAGCAATCAGTTCATCCTGCAGATGAGCCACCGAATTGT
CTGGCGTCGTTTCCCGCAGCGTCTTCTTATCCTCCTCCAGCTCCTCGACC
TTGGCCTTGAGGTTCCTGATCTGATCCTCGCTTTCGGCCAGTCCCTGACG
CACCTTCACCAGTTCCTCCAGCAAACAGGAGAACATCTCGTCGCGCTGCT
BS16839.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:25:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11727-PB | 2340 | CG11727-RB | 1457..2340 | 900..17 | 4395 | 99.8 | Minus |
CG11727-PA | 2424 | CG11727-RA | 1457..2286 | 900..71 | 4125 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:13:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Evi5-RB | 3177 | CG11727-RB | 2212..3096 | 900..16 | 4410 | 99.9 | Minus |
Evi5-RC | 3159 | CG11727-RC | 2194..3078 | 900..16 | 4410 | 99.9 | Minus |
Evi5-RE | 5423 | CG48-RE | 2194..3078 | 900..16 | 4410 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:13:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11435729..11436341 | 288..900 | 3050 | 99.8 | Plus |
X | 23542271 | X | 11435549..11435668 | 170..289 | 600 | 100 | Plus |
X | 23542271 | X | 11435383..11435483 | 71..171 | 505 | 100 | Plus |
X | 23542271 | X | 11434760..11434816 | 16..72 | 285 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 05:13:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
accord2 | 7650 | accord2 QBERT 7650bp | 2180..2246 | 585..519 | 110 | 62.7 | Minus |
BS16839.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:25:04 Download gff for
BS16839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11727-PB | 1457..2340 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:41:26 Download gff for
BS16839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Evi5-RE | 2194..3080 | 12..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:35:23 Download gff for
BS16839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Evi5-RE | 2194..3080 | 12..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:35:23 Download gff for
BS16839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11435549..11435666 | 170..287 | 100 | <- | Plus |
X | 11434758..11434814 | 12..70 | 96 | <- | Plus |
X | 11435383..11435481 | 71..169 | 100 | <- | Plus |
X | 11435729..11436341 | 288..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:41:26 Download gff for
BS16839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11328791..11328847 | 12..70 | 96 | <- | Plus |
arm_X | 11329416..11329514 | 71..169 | 100 | <- | Plus |
arm_X | 11329582..11329699 | 170..287 | 100 | <- | Plus |
arm_X | 11329762..11330374 | 288..900 | 99 | | Plus |
BS16839.5prime Sequence
910 bp (766 high quality bases) assembled on 2007-05-15
> BS16839.5prime
GAAGTTATCAGTCGACATGACCCTGACCACAACGACCACTGCCTCATCAG
CCGAGAGCCAAGCGAAAATGGACGTAAAGGGCGGCGCACTTCCCGGCGAA
GAGAACCTGCCCACATCCGAAATGGATCTGCTGGCCAAACTGGAGGCGGC
CAATAAGCTCATCGAGAGCGATGCCAAGTCCCTCAACTCTCTGCATTCCA
CGCACAGTCGCAAGAACTCGGATACGAGTCAAATCAGTCTTACGTCGAGT
GGAAATTCGGTGGCCGAAGAGGACATCTGGACGACGTGGGCCACCATCCT
CAATGACTGGGAGGGAGCACTGAAACGAAAGAATCCCTGCGTCAGTGAGC
TGGTGCGCCGTGGAATTCCACACCACTTCCGAGCGATCGTATGGCAGCAG
CTAAGTGGAGCGTCCGACGGCGACAAAAAACAGTATGCGGAGTACATCAA
GGCGACCAGTGCCTGCGAGAAGGTCATACGGCGTGACATTGCCCGCACCT
ATCCCGAGGTGGAGTTCTTCAAGGAGAAGGATGGACCCGGACAGGAGGCC
CTGTTCAATGTGATCAAGGCATATTCTCTGCACGATCGCGAGGTCGGCTA
CTGCCAGGGCTCGGGATTCATTGTGGGCCTGCTGCTGATGCAAATGCCCG
AGGAGGAGGCATTCGCTGTGCTCGTGCAGATCATGCAGCAGCATCGGATG
CGGCACATGTTTAAGCCCTCCATGTCGGAGTTGGGCTTGTGCATGTACCA
GCTGGAGAATCTGGTGCANGAGCAAATACCCGACATGCACATTCACTTCC
AGCAGCAGGGCTTCCAGACGACCATGTACGCCTCCCAGTGGGTCCTCACC
CTATACACGACCACTCTGAAATGTCATCTAAGTTGTCGCATCATGGACGT
CTTCCTCAGC
BS16839.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:19:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11727-PB | 2340 | CG11727-RB | 1..819 | 17..835 | 4076 | 99.8 | Plus |
CG11727-PA | 2424 | CG11727-RA | 1..819 | 17..835 | 4076 | 99.8 | Plus |
CG11727-PB | 2340 | CG11727-RB | 860..894 | 876..910 | 175 | 100 | Plus |
CG11727-PA | 2424 | CG11727-RA | 860..894 | 876..910 | 175 | 100 | Plus |
CG11727-PB | 2340 | CG11727-RB | 827..854 | 843..870 | 140 | 100 | Plus |
CG11727-PA | 2424 | CG11727-RA | 827..854 | 843..870 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:26:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Evi5-RB | 3177 | CG11727-RB | 756..1649 | 17..910 | 4354 | 99.3 | Plus |
Evi5-RA | 5936 | CG11727-RA | 756..1649 | 17..910 | 4354 | 99.3 | Plus |
Evi5-RC | 3159 | CG11727-RC | 756..1649 | 17..910 | 4354 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:26:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11437578..11438239 | 910..249 | 3164 | 98.5 | Minus |
X | 23542271 | X | 11438661..11438894 | 250..17 | 1170 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:26:22 has no hits.
BS16839.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:19:46 Download gff for
BS16839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11727-PA | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:30:39 Download gff for
BS16839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Evi5-RC | 749..1649 | 8..910 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:06:22 Download gff for
BS16839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Evi5-RC | 749..1649 | 8..910 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:06:22 Download gff for
BS16839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11437578..11438239 | 249..910 | 99 | <- | Minus |
X | 11438663..11438901 | 8..248 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:30:39 Download gff for
BS16839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11331611..11332272 | 249..910 | 99 | <- | Minus |
arm_X | 11332696..11332934 | 8..248 | 98 | | Minus |
BS16839.pep Sequence
Translation from 16 to 2355
> BS16839.pep
MTLTTTTTASSAESQAKMDVKGGALPGEENLPTSEMDLLAKLEAANKLIE
SDAKSLNSLHSTHSRKNSDTSQISLTSSGNSVAEEDIWTTWATILNDWEG
ALKRKNPCVSELVRRGIPHHFRAIVWQQLSGASDGDKKQYAEYIKATSAC
EKVIRRDIARTYPEVEFFKEKDGPGQEALFNVIKAYSLHDREVGYCQGSG
FIVGLLLMQMPEEEAFAVLVQIMQQHRMRHMFKPSMSELGLCMYQLENLV
QEQIPDMHIHFQQQGFQTTMYASSWFLTLYTTTLNVNLSCRIMDVFLSEG
MEFIFKVALALLLTGKDTLLCLDMEAMLKFFQKELPGRVEADVEGFFNLA
YSIKLNTKRMKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEA
ESAELADRLVRGQVSRAEEEETSYAIQTELMQLRRSYLEVSHQLENANEE
VRGLSLRLQENNVSIDSNNSRQSSIDELCMKEEALKQRDEMVSCLLEELV
KVRQGLAESEDQIRNLKAKVEELEEDKKTLRETTPDNSVAHLQDELIASK
LREAEASLSLKDLKQRVQELSSQWQRQLAENQRSESERTTNAVDSTPKKL
LTNFFDSSKSSEHTQKLEEELMTTRIREMETLTELKELRLKVMELETQVQ
VSTNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRMKD
ELMNVKIKFTEQSQTVAELKQEISRLETKNSEMLAEGELRANLDDSDKVR
DLQDRLADMKAEYPTPITSPDTEPWKWIS*
BS16839.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:21:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Evi5-PB | 779 | CG11727-PB | 1..779 | 1..779 | 3923 | 100 | Plus |
Evi5-PC | 773 | CG11727-PC | 1..773 | 1..779 | 3878 | 99.2 | Plus |
Evi5-PE | 773 | CG11727-PE | 1..773 | 1..779 | 3878 | 99.2 | Plus |
Evi5-PA | 807 | CG11727-PA | 1..762 | 1..762 | 3819 | 100 | Plus |
Evi5-PD | 801 | CG11727-PD | 1..756 | 1..762 | 3774 | 99.2 | Plus |