Clone BS16839 Report

Search the DGRC for BS16839

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:168
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptEvi5-RB
Protein status:BS16839.pep: full length peptide match
Sequenced Size:2372

Clone Sequence Records

BS16839.complete Sequence

2372 bp assembled on 2009-12-07

GenBank Submission: KX800649

> BS16839.complete
GAAGTTATCAGTCGACATGACCCTGACCACAACGACCACTGCCTCATCAG
CCGAGAGCCAAGCGAAAATGGACGTAAAGGGCGGCGCACTTCCCGGCGAA
GAGAACCTGCCCACATCCGAAATGGATCTGCTGGCCAAACTGGAGGCGGC
CAATAAGCTCATCGAGAGCGATGCCAAGTCCCTCAACTCTCTGCATTCCA
CGCACAGTCGCAAGAACTCGGATACGAGTCAAATCAGTCTTACGTCGAGT
GGAAATTCGGTGGCCGAAGAGGACATCTGGACGACGTGGGCCACCATCCT
CAATGACTGGGAGGGAGCACTGAAACGAAAGAATCCCTGCGTCAGTGAGC
TGGTGCGCCGTGGAATTCCACACCACTTCCGAGCGATCGTATGGCAGCAG
CTAAGTGGAGCGTCCGACGGCGACAAAAAACAGTATGCGGAGTACATCAA
GGCGACCAGTGCCTGCGAGAAGGTCATACGGCGTGACATTGCCCGCACCT
ATCCCGAGGTGGAGTTCTTCAAGGAGAAGGATGGACCCGGACAGGAGGCC
CTGTTCAATGTGATCAAGGCATATTCTCTGCACGATCGCGAGGTCGGCTA
CTGCCAGGGCTCGGGATTCATTGTGGGCCTGCTGCTGATGCAAATGCCCG
AGGAGGAGGCATTCGCTGTGCTCGTGCAGATCATGCAGCAGCATCGGATG
CGGCACATGTTTAAGCCCTCCATGTCGGAGTTGGGCTTGTGCATGTACCA
GCTGGAGAATCTGGTGCAGGAGCAAATACCCGACATGCACATTCACTTCC
AGCAGCAGGGCTTCCAGACGACCATGTACGCCTCCAGTTGGTTCCTCACC
CTATACACGACCACTCTGAATGTCAATCTAAGTTGTCGCATCATGGACGT
CTTCCTCAGCGAGGGCATGGAGTTCATCTTTAAGGTGGCCTTGGCCCTGC
TGCTCACCGGCAAGGATACGTTGCTCTGCCTGGACATGGAGGCCATGCTT
AAGTTCTTCCAAAAGGAGCTGCCCGGTCGCGTGGAGGCGGATGTCGAGGG
CTTCTTCAATCTAGCCTACTCCATAAAGCTGAATACTAAGCGTATGAAGA
AGATGGAAAAGGAGTACCAGGACCTCAAGAAGAAGGAGCAGGAGGAGATG
GCCGAGCTGCGGCGACTGAGACGCGAGAACTGCCTGCTGAAGCAGCGCAA
CGAGCTGCTGGAGGCCGAGAGTGCCGAACTGGCCGATCGCCTGGTCCGTG
GTCAGGTCTCCCGAGCTGAGGAGGAGGAAACTAGCTATGCCATTCAGACG
GAGCTAATGCAGCTGCGCCGATCATACTTGGAGGTCTCGCATCAGCTGGA
AAACGCCAACGAGGAGGTGCGCGGCCTGAGTCTACGGCTGCAGGAGAATA
ACGTATCCATCGACAGCAATAACTCCCGGCAATCGTCCATTGACGAGCTC
TGCATGAAGGAGGAGGCGCTGAAGCAGCGCGACGAGATGGTCTCCTGTTT
GCTGGAGGAACTGGTGAAGGTGCGTCAGGGACTGGCCGAAAGCGAGGATC
AGATCAGGAACCTCAAGGCCAAGGTCGAGGAGCTGGAGGAGGATAAGAAG
ACGCTGCGGGAAACGACGCCAGACAATTCGGTGGCTCATCTGCAGGATGA
ACTGATTGCTAGTAAACTTCGCGAGGCTGAGGCCTCACTTTCGCTAAAGG
ATCTCAAGCAGAGGGTGCAGGAGCTGAGCAGCCAGTGGCAGCGTCAATTG
GCCGAGAATCAGCGCAGCGAAAGCGAACGCACCACCAACGCTGTGGACTC
TACGCCCAAAAAGCTGTTGACCAACTTCTTTGACAGCTCCAAGAGTAGCG
AGCACACGCAGAAGCTCGAGGAGGAGCTGATGACCACGCGCATACGCGAG
ATGGAGACGCTTACCGAGCTCAAGGAGCTGCGACTTAAGGTCATGGAGCT
GGAGACGCAGGTCCAGGTGTCCACCAATCAGCTGAGGCGGCAGGACGAGG
AGCACAAGAAGCTCAAGGAGGAGCTCGAAATGGCCGTGACCCGGGAGAAG
GACATGTCCAACAAGGCGCGTGAACAGCAACACAGATACTCGGATCTGGA
ATCTCGCATGAAGGATGAGCTGATGAATGTGAAAATCAAATTCACCGAGC
AAAGCCAAACGGTGGCTGAACTGAAACAGGAAATTTCCCGTCTTGAGACC
AAGAACTCGGAAATGCTCGCCGAGGGCGAACTGCGCGCGAATCTGGATGA
TTCGGACAAGGTGCGCGACCTGCAGGACAGGCTGGCCGACATGAAGGCGG
AGTATCCCACGCCAATAACCAGCCCCGACACTGAGCCGTGGAAATGGATA
AGCTAAAAGCTTTCTAGACCAT

BS16839.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
Evi5-RB 2340 CG11727-PB 1..2340 17..2356 11700 100 Plus
Evi5-RA 2424 CG11727-PA 1..2286 17..2302 11430 100 Plus
Evi5-RC 2322 CG11727-PC 1..2322 17..2356 11395 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
Evi5-RB 3177 CG11727-RB 756..3096 17..2357 11705 100 Plus
Evi5-RA 5936 CG11727-RA 756..3041 17..2302 11430 100 Plus
Evi5-RC 3159 CG11727-RC 756..3078 17..2357 11400 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11437194..11438239 1294..249 5185 99.7 Minus
X 23542271 X 11435729..11436396 2085..1418 3340 100 Minus
X 23542271 X 11438661..11438894 250..17 1170 100 Minus
X 23542271 X 11435549..11435668 2203..2084 600 100 Minus
X 23542271 X 11437023..11437139 1399..1283 585 100 Minus
X 23542271 X 11435383..11435483 2302..2202 505 100 Minus
X 23542271 X 11434760..11434816 2357..2301 285 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:38:48 has no hits.

BS16839.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:13 Download gff for BS16839.complete
Subject Subject Range Query Range Percent Splice Strand
CG11727-RB 1..2340 17..2356 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:11 Download gff for BS16839.complete
Subject Subject Range Query Range Percent Splice Strand
CG11727-RB 720..3057 17..2354 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:38 Download gff for BS16839.complete
Subject Subject Range Query Range Percent Splice Strand
Evi5-RB 756..3093 17..2354 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:05 Download gff for BS16839.complete
Subject Subject Range Query Range Percent Splice Strand
CG11727-RB 720..3057 17..2354 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:31 Download gff for BS16839.complete
Subject Subject Range Query Range Percent Splice Strand
Evi5-RB 756..3093 17..2354 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:31 Download gff for BS16839.complete
Subject Subject Range Query Range Percent Splice Strand
X 11435549..11435666 2086..2203 100 <- Minus
X 11434763..11434814 2303..2354 100 <- Minus
X 11435383..11435481 2204..2302 100 <- Minus
X 11435729..11436396 1418..2085 100 <- Minus
X 11436775..11436792 1400..1417 100 <- Minus
X 11437023..11437137 1285..1399 100 <- Minus
X 11437204..11438239 249..1284 100 <- Minus
X 11438663..11438894 17..248 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:38 Download gff for BS16839.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11328796..11328847 2303..2354 100 <- Minus
arm_X 11329416..11329514 2204..2302 100 <- Minus
arm_X 11329582..11329699 2086..2203 100 <- Minus
arm_X 11329762..11330429 1418..2085 100 <- Minus
arm_X 11330808..11330825 1400..1417 100 <- Minus
arm_X 11331056..11331170 1285..1399 100 <- Minus
arm_X 11331237..11332272 249..1284 100 <- Minus
arm_X 11332696..11332927 17..248 100   Minus

BS16839.3prime Sequence

900 bp (847 high quality bases) assembled on 2007-05-15

> BS16839.3prime
ATGGTCTAGAAAGCTTTTAGCTTATCCATTTCCACGGCTCAGTGTCGGGG
CTGGTTATTGGCGTGGGATACTCCGCCTTCATGTCGGCCAGCCTGTCCTG
CAGGTCGCGCACCTTGTCCGAATCATCCAGATTCGCGCGCAGTTCGCCCT
CGGCGAGCATTTCCGAGTTCTTGGTCTCAAGACGGGAAATTTCCTGTTTC
AGTTCAGCCACCGTTTGGCTTTGCTCGGTGAATTTGATTTTCACATTCAT
CAGCTCATCCTTCATGCGAGATTCCAGATCCGAGTATCTGTGTTGCTGTT
CACGCGCCTTGTTGGACATGTCCTTCTCCCGGGTCACGGCCATTTCGAGC
TCCTCCTTGAGCTTCTTGTGCTCCTCGTCCTGCCGCCTCAGCTGATTGGT
GGACACCTGGACCTGCGTCTCCAGCTCCATGACCTTAAGTCGCAGCTCCT
TGAGCTCGGTAAGCGTCTCCATCTCGCGTATGCGCGTGGTCATCAGCTCC
TCCTCGAGCTTCTGCGTGTGCTCGCTACTCTTGGAGCTGTCAAAGAAGTT
GGTCAACAGCTTTTTGGGCGTAGAGTCCACAGCGTTGGTGGTGCGTTCGC
TTTCGCTGCGCTGATTCTCGGCCAATTGACGCTGCCACTGGCTGCTCAGC
TCCTGCACCCTCTGCTTGAGATCCTTTAGCGAAAGTGAGGCCTCAGCCTC
GCGAAGTTTACTAGCAATCAGTTCATCCTGCAGATGAGCCACCGAATTGT
CTGGCGTCGTTTCCCGCAGCGTCTTCTTATCCTCCTCCAGCTCCTCGACC
TTGGCCTTGAGGTTCCTGATCTGATCCTCGCTTTCGGCCAGTCCCTGACG
CACCTTCACCAGTTCCTCCAGCAAACAGGAGAACATCTCGTCGCGCTGCT

BS16839.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG11727-PB 2340 CG11727-RB 1457..2340 900..17 4395 99.8 Minus
CG11727-PA 2424 CG11727-RA 1457..2286 900..71 4125 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
Evi5-RB 3177 CG11727-RB 2212..3096 900..16 4410 99.9 Minus
Evi5-RC 3159 CG11727-RC 2194..3078 900..16 4410 99.9 Minus
Evi5-RE 5423 CG48-RE 2194..3078 900..16 4410 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:13:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11435729..11436341 288..900 3050 99.8 Plus
X 23542271 X 11435549..11435668 170..289 600 100 Plus
X 23542271 X 11435383..11435483 71..171 505 100 Plus
X 23542271 X 11434760..11434816 16..72 285 100 Plus
Blast to na_te.dros performed 2015-02-12 05:13:56
Subject Length Description Subject Range Query Range Score Percent Strand
accord2 7650 accord2 QBERT 7650bp 2180..2246 585..519 110 62.7 Minus

BS16839.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:25:04 Download gff for BS16839.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11727-PB 1457..2340 17..900 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:41:26 Download gff for BS16839.3prime
Subject Subject Range Query Range Percent Splice Strand
Evi5-RE 2194..3080 12..900 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:35:23 Download gff for BS16839.3prime
Subject Subject Range Query Range Percent Splice Strand
Evi5-RE 2194..3080 12..900 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:35:23 Download gff for BS16839.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11435549..11435666 170..287 100 <- Plus
X 11434758..11434814 12..70 96 <- Plus
X 11435383..11435481 71..169 100 <- Plus
X 11435729..11436341 288..900 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:41:26 Download gff for BS16839.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11328791..11328847 12..70 96 <- Plus
arm_X 11329416..11329514 71..169 100 <- Plus
arm_X 11329582..11329699 170..287 100 <- Plus
arm_X 11329762..11330374 288..900 99   Plus

BS16839.5prime Sequence

910 bp (766 high quality bases) assembled on 2007-05-15

> BS16839.5prime
GAAGTTATCAGTCGACATGACCCTGACCACAACGACCACTGCCTCATCAG
CCGAGAGCCAAGCGAAAATGGACGTAAAGGGCGGCGCACTTCCCGGCGAA
GAGAACCTGCCCACATCCGAAATGGATCTGCTGGCCAAACTGGAGGCGGC
CAATAAGCTCATCGAGAGCGATGCCAAGTCCCTCAACTCTCTGCATTCCA
CGCACAGTCGCAAGAACTCGGATACGAGTCAAATCAGTCTTACGTCGAGT
GGAAATTCGGTGGCCGAAGAGGACATCTGGACGACGTGGGCCACCATCCT
CAATGACTGGGAGGGAGCACTGAAACGAAAGAATCCCTGCGTCAGTGAGC
TGGTGCGCCGTGGAATTCCACACCACTTCCGAGCGATCGTATGGCAGCAG
CTAAGTGGAGCGTCCGACGGCGACAAAAAACAGTATGCGGAGTACATCAA
GGCGACCAGTGCCTGCGAGAAGGTCATACGGCGTGACATTGCCCGCACCT
ATCCCGAGGTGGAGTTCTTCAAGGAGAAGGATGGACCCGGACAGGAGGCC
CTGTTCAATGTGATCAAGGCATATTCTCTGCACGATCGCGAGGTCGGCTA
CTGCCAGGGCTCGGGATTCATTGTGGGCCTGCTGCTGATGCAAATGCCCG
AGGAGGAGGCATTCGCTGTGCTCGTGCAGATCATGCAGCAGCATCGGATG
CGGCACATGTTTAAGCCCTCCATGTCGGAGTTGGGCTTGTGCATGTACCA
GCTGGAGAATCTGGTGCANGAGCAAATACCCGACATGCACATTCACTTCC
AGCAGCAGGGCTTCCAGACGACCATGTACGCCTCCCAGTGGGTCCTCACC
CTATACACGACCACTCTGAAATGTCATCTAAGTTGTCGCATCATGGACGT
CTTCCTCAGC

BS16839.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:19:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG11727-PB 2340 CG11727-RB 1..819 17..835 4076 99.8 Plus
CG11727-PA 2424 CG11727-RA 1..819 17..835 4076 99.8 Plus
CG11727-PB 2340 CG11727-RB 860..894 876..910 175 100 Plus
CG11727-PA 2424 CG11727-RA 860..894 876..910 175 100 Plus
CG11727-PB 2340 CG11727-RB 827..854 843..870 140 100 Plus
CG11727-PA 2424 CG11727-RA 827..854 843..870 140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
Evi5-RB 3177 CG11727-RB 756..1649 17..910 4354 99.3 Plus
Evi5-RA 5936 CG11727-RA 756..1649 17..910 4354 99.3 Plus
Evi5-RC 3159 CG11727-RC 756..1649 17..910 4354 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11437578..11438239 910..249 3164 98.5 Minus
X 23542271 X 11438661..11438894 250..17 1170 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:26:22 has no hits.

BS16839.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:19:46 Download gff for BS16839.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11727-PA 1..894 17..910 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:30:39 Download gff for BS16839.5prime
Subject Subject Range Query Range Percent Splice Strand
Evi5-RC 749..1649 8..910 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:06:22 Download gff for BS16839.5prime
Subject Subject Range Query Range Percent Splice Strand
Evi5-RC 749..1649 8..910 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:06:22 Download gff for BS16839.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11437578..11438239 249..910 99 <- Minus
X 11438663..11438901 8..248 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:30:39 Download gff for BS16839.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11331611..11332272 249..910 99 <- Minus
arm_X 11332696..11332934 8..248 98   Minus

BS16839.pep Sequence

Translation from 16 to 2355

> BS16839.pep
MTLTTTTTASSAESQAKMDVKGGALPGEENLPTSEMDLLAKLEAANKLIE
SDAKSLNSLHSTHSRKNSDTSQISLTSSGNSVAEEDIWTTWATILNDWEG
ALKRKNPCVSELVRRGIPHHFRAIVWQQLSGASDGDKKQYAEYIKATSAC
EKVIRRDIARTYPEVEFFKEKDGPGQEALFNVIKAYSLHDREVGYCQGSG
FIVGLLLMQMPEEEAFAVLVQIMQQHRMRHMFKPSMSELGLCMYQLENLV
QEQIPDMHIHFQQQGFQTTMYASSWFLTLYTTTLNVNLSCRIMDVFLSEG
MEFIFKVALALLLTGKDTLLCLDMEAMLKFFQKELPGRVEADVEGFFNLA
YSIKLNTKRMKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEA
ESAELADRLVRGQVSRAEEEETSYAIQTELMQLRRSYLEVSHQLENANEE
VRGLSLRLQENNVSIDSNNSRQSSIDELCMKEEALKQRDEMVSCLLEELV
KVRQGLAESEDQIRNLKAKVEELEEDKKTLRETTPDNSVAHLQDELIASK
LREAEASLSLKDLKQRVQELSSQWQRQLAENQRSESERTTNAVDSTPKKL
LTNFFDSSKSSEHTQKLEEELMTTRIREMETLTELKELRLKVMELETQVQ
VSTNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRMKD
ELMNVKIKFTEQSQTVAELKQEISRLETKNSEMLAEGELRANLDDSDKVR
DLQDRLADMKAEYPTPITSPDTEPWKWIS*

BS16839.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
Evi5-PB 779 CG11727-PB 1..779 1..779 3923 100 Plus
Evi5-PC 773 CG11727-PC 1..773 1..779 3878 99.2 Plus
Evi5-PE 773 CG11727-PE 1..773 1..779 3878 99.2 Plus
Evi5-PA 807 CG11727-PA 1..762 1..762 3819 100 Plus
Evi5-PD 801 CG11727-PD 1..756 1..762 3774 99.2 Plus