Clone BS16840 Report

Search the DGRC for BS16840

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:168
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptKLHL18-RB
Protein status:BS16840.pep: full length peptide match
Sequenced Size:1649

Clone Sequence Records

BS16840.complete Sequence

1649 bp assembled on 2009-12-07

GenBank Submission: KX802406

> BS16840.complete
GAAGTTATCAGTCGACATGCCATCCCAATTATTGCAGGTTGAAGATCAGA
CCTTCTCAGCGCACCGCGTTGTGCTGGCGGCCACCATCCCGTATTTCTAT
GCGATGTTCACCAACAACATGGCAGAGAGTCGGATCAAGGAGATCACCAT
GAAGGAGAGCGCCATAGAGCCAAGTGCCCTGGAGAGTCTGATCAACTATG
TTTACAGCGGCCAAGTGCGCATCGACAACCAGAATGTGCAGAACCTGATG
GTGGGCGCCAGCTTCCTGCAATTGTCCAACGTGCGGGATGCCTGTGCCAG
TTTCCTGATCTCCCGCTTTCATCCGCACAATGTCCTGGGAATCCGCACCT
TCGCCGACTCCATGATCTGCCGGCAGCTAATCGACGCTGCCGACAAGTAT
ATTGATCAAAACTTTGCCAAAGTCTCGCAGTCGGAGGAGTTTCTCGCCCT
GGACTGCGAACAATTGCTGGAGCTGATGCGCCGGGACGAACTCAACGTAC
GCACCGAGGAGGTCATCTTCGAGGCCTGCATGAAGTGGGTCAAGTACGCA
GAAGACAAGCGCTCTGAGCTCTTTCCTCAGGTCCTGGCTGCAGTGCGTTT
GCCATTGCTCTCGCCTCAGTTCCTGGCGGACCGTGTGGCCCGCGAGGAAC
TCATTCGATCCTCGCACCAATGCCGTGATCTCCTAGACGAGGCCAAGGAC
TTTCACCTCATGCCCGAGCGCAGGGGTCTGCTGCAGAGCTTTCGCACGCG
CCAGAGATCCGGTGAGTTCTTTACCGGACAAATATACGCCGTGGGAGGAC
TGGCCAGCACTGGGGAATCTGTGAGCACGGTCGAGATTTACGATCCGCTC
ACCAAAAAATGGAAAATGGGCGAACAAATGTCCATGATGAGATCTCGCGT
GGGTGTGGCCGTTTTGAATGGCAAGCTGTACGCCTTTGGTGGATTCAATG
GCACCGAACGTCTGTCCACCGTTGAGGTCTACGACCCGCGCAAAAACAAG
TGGTCCCAGGGCTGTGCCATGCTCTGCAAACGCAGCGCCGTGGGCGTGGC
CGCATTGGATGATTGTATCTATGTGTGCGGCGGCTACGACGGCGTCACGT
CGCTCAACACCGTTGAAGTTTACTATCCAAAGTCTAACACTTGGAAGACT
GTTGCTCAAATGATGAAATATCGTTCGGCTGGTGGAGTTACCCAATTGAA
CGGCTACGTCTACGCCCTTGGCGGTCATGATGGGTTGTCCATATTCGATT
CGGTGGAGCGGTACGACCAGGCCGAAGATGTCTGGGTTAAGATGTCGCCC
ATGCTGAATCGTCGCTGTAGACTGGGCGTGGCCACGCTGAACGGAAAGAT
ATACGTGTGCGGCGGCTACTGCGGCAACTCATTCCTTCGATCCGTAGAGT
GCTACGACCCTCAGACGGACACCTGGAAGCTGGTGACACCAATGAATTGC
AAACGCTCGCGGGTGGCTCTGGCCGCCAACATGGGCAAACTGTGGGCCAT
CGGCGGCTATGATGGCGAGTCAAATTTGTCTACAGTCGAGGTGTACGATC
CGGAGACCGACAAATGGACCTTTATGCCGCCCATGTGCGCACACAGTGGT
GGTGTCGGAGCCGGGGTCATACGGATCGAGTAAAAGCTTTCTAGACCAT

BS16840.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
KLHL18-RB 1617 CG3571-PB 1..1617 17..1633 8070 99.9 Plus
KLHL18-RC 1728 CG3571-PC 131..1728 36..1633 7975 99.9 Plus
KLHL18-RA 1728 CG3571-PA 131..1728 36..1633 7975 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:44
Subject Length Description Subject Range Query Range Score Percent Strand
KLHL18-RB 2199 CG3571-RB 271..1887 17..1633 8070 99.9 Plus
KLHL18-RC 2292 CG3571-RC 192..1789 36..1633 7975 99.9 Plus
KLHL18-RA 2101 CG3571-RA 192..1789 36..1633 7975 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12009290..12010164 891..17 4375 100 Minus
3R 32079331 3R 12008413..12008895 1633..1151 2415 100 Minus
3R 32079331 3R 12008967..12009229 1152..890 1300 99.6 Minus
Blast to na_te.dros performed on 2014-11-28 01:45:42 has no hits.

BS16840.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:14 Download gff for BS16840.complete
Subject Subject Range Query Range Percent Splice Strand
CG3571-RB 1..1617 17..1633 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:05 Download gff for BS16840.complete
Subject Subject Range Query Range Percent Splice Strand
CG3571-RB 203..1817 17..1631 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:00 Download gff for BS16840.complete
Subject Subject Range Query Range Percent Splice Strand
KLHL18-RB 271..1885 17..1631 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:47 Download gff for BS16840.complete
Subject Subject Range Query Range Percent Splice Strand
CG3571-RB 203..1817 17..1631 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:12 Download gff for BS16840.complete
Subject Subject Range Query Range Percent Splice Strand
KLHL18-RB 271..1885 17..1631 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:12 Download gff for BS16840.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12008415..12008895 1151..1631 100 <- Minus
3R 12008969..12009227 892..1150 99 <- Minus
3R 12009290..12010164 17..891 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:00 Download gff for BS16840.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7834137..7834617 1151..1631 100 <- Minus
arm_3R 7834691..7834949 892..1150 99 <- Minus
arm_3R 7835012..7835886 17..891 100   Minus

BS16840.3prime Sequence

812 bp (785 high quality bases) assembled on 2007-05-15

> BS16840.3prime
ATGGTCTAGAAAGCTTTTACTCGATCCGTATGACCCCGGCTCCGACACCA
CCACTGTGTGCGCACATGGGCGGCATAAAGGTCCATTTGTCGGTCTCCGG
ATCGTACACCTCGACTGTAGACAAATTTGACTCGCCATCATAGCCGCCGA
TGGCCCACAGTTTGCCCATGTTGGCGGCCAGAGCCACCCGCGAGCGTTTG
CAATTCATTGGTGTCACCAGCTTCCAGGTGTCCGTCTGAGGGTCGTAGCA
CTCTACGGATCGAAGGAATGAGTTGCCGCAGTAGCCGCCGCACACGTATA
TCTTTCCGTTCAGCGTGGCCACGCCCAGTCTACAGCGACGATTCAGCATG
GGCGACATCTTAACCCAGACATCTTCGGCCTGGTCGTACCGCTCCACCGA
ATCGAATATGGACAACCCATCATGACCGCCAAGGGCGTAGACGTAGCCGT
TCAATTGGGTAACTCCACCAGCCGAACGATATTTCATCATTTGAGCAACA
GTCTTCCAAGTGTTAGACTTTGGATAGTAAACTTCAACGGTGTTGAGCGA
CGTGACGCCGTCGTAGCCGCCGCACACATAGATACAATCATCCAATGCGG
CCACGCCCACGGCGCTGCGTTTGCAGAGCATGGCACAGCCCTGGGACCAC
TTGTTTTTGCGCGGGTCGTAGACCTCAACGGTGGACAGACGTTCGGTGCC
ATTGAATCCACCAAAGGCGTACAGCTTGCCATTCAAAACGGCCACACCCA
CGCGAGATCTCATCATGGACATTTGTTCGCCCATTTTCCATTTTTTGGTG
AGCGGATCGTAA

BS16840.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG3571-PA 1728 CG3571-RA 933..1728 812..17 3955 99.8 Minus
CG3571-PB 1617 CG3571-RB 822..1617 812..17 3955 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
KLHL18-RC 2292 CG3571-RC 994..1789 812..17 3965 99.9 Minus
KLHL18-RB 2199 CG3571-RB 1092..1887 812..17 3965 99.9 Minus
KLHL18-RA 2101 CG3571-RA 994..1789 812..17 3965 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:20:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12008413..12008895 17..499 2415 100 Plus
3R 32079331 3R 12008967..12009229 498..760 1300 99.6 Plus
3R 32079331 3R 12009290..12009343 759..812 270 100 Plus
Blast to na_te.dros performed on 2015-02-13 13:20:52 has no hits.

BS16840.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:27:53 Download gff for BS16840.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3571-PB 824..1617 17..810 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:41:20 Download gff for BS16840.3prime
Subject Subject Range Query Range Percent Splice Strand
KLHL18-RA 994..1789 17..812 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:47:33 Download gff for BS16840.3prime
Subject Subject Range Query Range Percent Splice Strand
KLHL18-RA 994..1789 17..812 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:47:33 Download gff for BS16840.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12008413..12008895 17..499 100 <- Plus
3R 12008969..12009227 500..758 99 <- Plus
3R 12009290..12009343 759..812 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:41:20 Download gff for BS16840.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7834135..7834617 17..499 100 <- Plus
arm_3R 7834691..7834949 500..758 99 <- Plus
arm_3R 7835012..7835065 759..812 100   Plus

BS16840.5prime Sequence

791 bp (768 high quality bases) assembled on 2007-05-15

> BS16840.5prime
GAAGTTATCAGTCGACATGCCATCCCAATTATTGCAGGTTGAAGATCAGA
CCTTCTCAGCGCACCGCGTTGTGCTGGCGGCCACCATCCCGTATTTCTAT
GCGATGTTCACCAACAACATGGCAGAGAGTCGGATCAAGGAGATCACCAT
GAAGGAGAGCGCCATAGAGCCAAGTGCCCTGGAGAGTCTGATCAACTATG
TTTACAGCGGCCAAGTGCGCATCGACAACCAGAATGTGCAGAACCTGATG
GTGGGCGCCAGCTTCCTGCAATTGTCCAACGTGCGGGATGCCTGTGCCAG
TTTCCTGATCTCCCGCTTTCATCCGCACAATGTCCTGGGAATCCGCACCT
TCGCCGACTCCATGATCTGCCGGCAGCTAATCGACGCTGCCGACAAGTAT
ATTGATCAAAACTTTGCCAAAGTCTCGCAGTCGGAGGAGTTTCTCGCCCT
GGACTGCGAACAATTGCTGGAGCTGATGCGCCGGGACGAACTCAACGTAC
GCACCGAGGAGGTCATCTTCGAGGCCTGCATGAAGTGGGTCAAGTACGCA
GAAGACAAGCGCTCTGAGCTCTTTCCTCAGGTCCTGGCTGCAGTGCGTTT
GCCATTGCTCTCGCCTCAGTTCCTGGCGGACCGTGTGGCCCGCGAGGAAC
TCATTCGATCCTCGCACCAATGCCGTGATCTCCTAGACGAGGCCAAGGAC
TTTCACCTCATGCCCGAGCGCAGGGGTCTGCTGCAGAGCTTTCGCACGCG
CCAGAGATCCGGTGAGTTCTTTACCGGACAAATATACGCCG

BS16840.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG3571-PB 1617 CG3571-RB 1..775 17..791 3875 100 Plus
CG3571-PA 1728 CG3571-RA 131..886 36..791 3780 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
KLHL18-RB 2199 CG3571-RB 271..1045 17..791 3875 100 Plus
KLHL18-RC 2292 CG3571-RC 192..947 36..791 3780 100 Plus
KLHL18-RA 2101 CG3571-RA 192..947 36..791 3780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:35:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12009390..12010164 791..17 3875 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:35:45 has no hits.

BS16840.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:22:06 Download gff for BS16840.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3571-PB 1..775 17..791 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:18:40 Download gff for BS16840.5prime
Subject Subject Range Query Range Percent Splice Strand
KLHL18-RB 271..1045 17..791 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:10:55 Download gff for BS16840.5prime
Subject Subject Range Query Range Percent Splice Strand
KLHL18-RB 271..1045 17..791 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:10:55 Download gff for BS16840.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12009390..12010164 17..791 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:18:40 Download gff for BS16840.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7835112..7835886 17..791 100   Minus

BS16840.pep Sequence

Translation from 16 to 1632

> BS16840.pep
MPSQLLQVEDQTFSAHRVVLAATIPYFYAMFTNNMAESRIKEITMKESAI
EPSALESLINYVYSGQVRIDNQNVQNLMVGASFLQLSNVRDACASFLISR
FHPHNVLGIRTFADSMICRQLIDAADKYIDQNFAKVSQSEEFLALDCEQL
LELMRRDELNVRTEEVIFEACMKWVKYAEDKRSELFPQVLAAVRLPLLSP
QFLADRVAREELIRSSHQCRDLLDEAKDFHLMPERRGLLQSFRTRQRSGE
FFTGQIYAVGGLASTGESVSTVEIYDPLTKKWKMGEQMSMMRSRVGVAVL
NGKLYAFGGFNGTERLSTVEVYDPRKNKWSQGCAMLCKRSAVGVAALDDC
IYVCGGYDGVTSLNTVEVYYPKSNTWKTVAQMMKYRSAGGVTQLNGYVYA
LGGHDGLSIFDSVERYDQAEDVWVKMSPMLNRRCRLGVATLNGKIYVCGG
YCGNSFLRSVECYDPQTDTWKLVTPMNCKRSRVALAANMGKLWAIGGYDG
ESNLSTVEVYDPETDKWTFMPPMCAHSGGVGAGVIRIE*

BS16840.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:21:48
Subject Length Description Subject Range Query Range Score Percent Strand
KLHL18-PB 538 CG3571-PB 1..538 1..538 2814 100 Plus
KLHL18-PC 575 CG3571-PC 43..575 6..538 2785 99.8 Plus
KLHL18-PA 575 CG3571-PA 43..575 6..538 2785 99.8 Plus
dbo-PB 620 CG6224-PB 75..604 5..536 1142 45.6 Plus
dbo-PA 623 CG6224-PA 75..604 5..536 1142 45.6 Plus