Clone Sequence Records
BS16840.complete Sequence
1649 bp assembled on 2009-12-07
GenBank Submission: KX802406
> BS16840.complete
GAAGTTATCAGTCGACATGCCATCCCAATTATTGCAGGTTGAAGATCAGA
CCTTCTCAGCGCACCGCGTTGTGCTGGCGGCCACCATCCCGTATTTCTAT
GCGATGTTCACCAACAACATGGCAGAGAGTCGGATCAAGGAGATCACCAT
GAAGGAGAGCGCCATAGAGCCAAGTGCCCTGGAGAGTCTGATCAACTATG
TTTACAGCGGCCAAGTGCGCATCGACAACCAGAATGTGCAGAACCTGATG
GTGGGCGCCAGCTTCCTGCAATTGTCCAACGTGCGGGATGCCTGTGCCAG
TTTCCTGATCTCCCGCTTTCATCCGCACAATGTCCTGGGAATCCGCACCT
TCGCCGACTCCATGATCTGCCGGCAGCTAATCGACGCTGCCGACAAGTAT
ATTGATCAAAACTTTGCCAAAGTCTCGCAGTCGGAGGAGTTTCTCGCCCT
GGACTGCGAACAATTGCTGGAGCTGATGCGCCGGGACGAACTCAACGTAC
GCACCGAGGAGGTCATCTTCGAGGCCTGCATGAAGTGGGTCAAGTACGCA
GAAGACAAGCGCTCTGAGCTCTTTCCTCAGGTCCTGGCTGCAGTGCGTTT
GCCATTGCTCTCGCCTCAGTTCCTGGCGGACCGTGTGGCCCGCGAGGAAC
TCATTCGATCCTCGCACCAATGCCGTGATCTCCTAGACGAGGCCAAGGAC
TTTCACCTCATGCCCGAGCGCAGGGGTCTGCTGCAGAGCTTTCGCACGCG
CCAGAGATCCGGTGAGTTCTTTACCGGACAAATATACGCCGTGGGAGGAC
TGGCCAGCACTGGGGAATCTGTGAGCACGGTCGAGATTTACGATCCGCTC
ACCAAAAAATGGAAAATGGGCGAACAAATGTCCATGATGAGATCTCGCGT
GGGTGTGGCCGTTTTGAATGGCAAGCTGTACGCCTTTGGTGGATTCAATG
GCACCGAACGTCTGTCCACCGTTGAGGTCTACGACCCGCGCAAAAACAAG
TGGTCCCAGGGCTGTGCCATGCTCTGCAAACGCAGCGCCGTGGGCGTGGC
CGCATTGGATGATTGTATCTATGTGTGCGGCGGCTACGACGGCGTCACGT
CGCTCAACACCGTTGAAGTTTACTATCCAAAGTCTAACACTTGGAAGACT
GTTGCTCAAATGATGAAATATCGTTCGGCTGGTGGAGTTACCCAATTGAA
CGGCTACGTCTACGCCCTTGGCGGTCATGATGGGTTGTCCATATTCGATT
CGGTGGAGCGGTACGACCAGGCCGAAGATGTCTGGGTTAAGATGTCGCCC
ATGCTGAATCGTCGCTGTAGACTGGGCGTGGCCACGCTGAACGGAAAGAT
ATACGTGTGCGGCGGCTACTGCGGCAACTCATTCCTTCGATCCGTAGAGT
GCTACGACCCTCAGACGGACACCTGGAAGCTGGTGACACCAATGAATTGC
AAACGCTCGCGGGTGGCTCTGGCCGCCAACATGGGCAAACTGTGGGCCAT
CGGCGGCTATGATGGCGAGTCAAATTTGTCTACAGTCGAGGTGTACGATC
CGGAGACCGACAAATGGACCTTTATGCCGCCCATGTGCGCACACAGTGGT
GGTGTCGGAGCCGGGGTCATACGGATCGAGTAAAAGCTTTCTAGACCAT
BS16840.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:45:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
KLHL18-RB | 1617 | CG3571-PB | 1..1617 | 17..1633 | 8070 | 99.9 | Plus |
KLHL18-RC | 1728 | CG3571-PC | 131..1728 | 36..1633 | 7975 | 99.9 | Plus |
KLHL18-RA | 1728 | CG3571-PA | 131..1728 | 36..1633 | 7975 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
KLHL18-RB | 2199 | CG3571-RB | 271..1887 | 17..1633 | 8070 | 99.9 | Plus |
KLHL18-RC | 2292 | CG3571-RC | 192..1789 | 36..1633 | 7975 | 99.9 | Plus |
KLHL18-RA | 2101 | CG3571-RA | 192..1789 | 36..1633 | 7975 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12009290..12010164 | 891..17 | 4375 | 100 | Minus |
3R | 32079331 | 3R | 12008413..12008895 | 1633..1151 | 2415 | 100 | Minus |
3R | 32079331 | 3R | 12008967..12009229 | 1152..890 | 1300 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:45:42 has no hits.
BS16840.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:14 Download gff for
BS16840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3571-RB | 1..1617 | 17..1633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:05 Download gff for
BS16840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3571-RB | 203..1817 | 17..1631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:00 Download gff for
BS16840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KLHL18-RB | 271..1885 | 17..1631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:47 Download gff for
BS16840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3571-RB | 203..1817 | 17..1631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:12 Download gff for
BS16840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KLHL18-RB | 271..1885 | 17..1631 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:12 Download gff for
BS16840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12008415..12008895 | 1151..1631 | 100 | <- | Minus |
3R | 12008969..12009227 | 892..1150 | 99 | <- | Minus |
3R | 12009290..12010164 | 17..891 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:00 Download gff for
BS16840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7834137..7834617 | 1151..1631 | 100 | <- | Minus |
arm_3R | 7834691..7834949 | 892..1150 | 99 | <- | Minus |
arm_3R | 7835012..7835886 | 17..891 | 100 | | Minus |
BS16840.3prime Sequence
812 bp (785 high quality bases) assembled on 2007-05-15
> BS16840.3prime
ATGGTCTAGAAAGCTTTTACTCGATCCGTATGACCCCGGCTCCGACACCA
CCACTGTGTGCGCACATGGGCGGCATAAAGGTCCATTTGTCGGTCTCCGG
ATCGTACACCTCGACTGTAGACAAATTTGACTCGCCATCATAGCCGCCGA
TGGCCCACAGTTTGCCCATGTTGGCGGCCAGAGCCACCCGCGAGCGTTTG
CAATTCATTGGTGTCACCAGCTTCCAGGTGTCCGTCTGAGGGTCGTAGCA
CTCTACGGATCGAAGGAATGAGTTGCCGCAGTAGCCGCCGCACACGTATA
TCTTTCCGTTCAGCGTGGCCACGCCCAGTCTACAGCGACGATTCAGCATG
GGCGACATCTTAACCCAGACATCTTCGGCCTGGTCGTACCGCTCCACCGA
ATCGAATATGGACAACCCATCATGACCGCCAAGGGCGTAGACGTAGCCGT
TCAATTGGGTAACTCCACCAGCCGAACGATATTTCATCATTTGAGCAACA
GTCTTCCAAGTGTTAGACTTTGGATAGTAAACTTCAACGGTGTTGAGCGA
CGTGACGCCGTCGTAGCCGCCGCACACATAGATACAATCATCCAATGCGG
CCACGCCCACGGCGCTGCGTTTGCAGAGCATGGCACAGCCCTGGGACCAC
TTGTTTTTGCGCGGGTCGTAGACCTCAACGGTGGACAGACGTTCGGTGCC
ATTGAATCCACCAAAGGCGTACAGCTTGCCATTCAAAACGGCCACACCCA
CGCGAGATCTCATCATGGACATTTGTTCGCCCATTTTCCATTTTTTGGTG
AGCGGATCGTAA
BS16840.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:27:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3571-PA | 1728 | CG3571-RA | 933..1728 | 812..17 | 3955 | 99.8 | Minus |
CG3571-PB | 1617 | CG3571-RB | 822..1617 | 812..17 | 3955 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:20:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
KLHL18-RC | 2292 | CG3571-RC | 994..1789 | 812..17 | 3965 | 99.9 | Minus |
KLHL18-RB | 2199 | CG3571-RB | 1092..1887 | 812..17 | 3965 | 99.9 | Minus |
KLHL18-RA | 2101 | CG3571-RA | 994..1789 | 812..17 | 3965 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:20:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12008413..12008895 | 17..499 | 2415 | 100 | Plus |
3R | 32079331 | 3R | 12008967..12009229 | 498..760 | 1300 | 99.6 | Plus |
3R | 32079331 | 3R | 12009290..12009343 | 759..812 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:20:52 has no hits.
BS16840.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:27:53 Download gff for
BS16840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3571-PB | 824..1617 | 17..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:41:20 Download gff for
BS16840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KLHL18-RA | 994..1789 | 17..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:47:33 Download gff for
BS16840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KLHL18-RA | 994..1789 | 17..812 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:47:33 Download gff for
BS16840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12008413..12008895 | 17..499 | 100 | <- | Plus |
3R | 12008969..12009227 | 500..758 | 99 | <- | Plus |
3R | 12009290..12009343 | 759..812 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:41:20 Download gff for
BS16840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7834135..7834617 | 17..499 | 100 | <- | Plus |
arm_3R | 7834691..7834949 | 500..758 | 99 | <- | Plus |
arm_3R | 7835012..7835065 | 759..812 | 100 | | Plus |
BS16840.5prime Sequence
791 bp (768 high quality bases) assembled on 2007-05-15
> BS16840.5prime
GAAGTTATCAGTCGACATGCCATCCCAATTATTGCAGGTTGAAGATCAGA
CCTTCTCAGCGCACCGCGTTGTGCTGGCGGCCACCATCCCGTATTTCTAT
GCGATGTTCACCAACAACATGGCAGAGAGTCGGATCAAGGAGATCACCAT
GAAGGAGAGCGCCATAGAGCCAAGTGCCCTGGAGAGTCTGATCAACTATG
TTTACAGCGGCCAAGTGCGCATCGACAACCAGAATGTGCAGAACCTGATG
GTGGGCGCCAGCTTCCTGCAATTGTCCAACGTGCGGGATGCCTGTGCCAG
TTTCCTGATCTCCCGCTTTCATCCGCACAATGTCCTGGGAATCCGCACCT
TCGCCGACTCCATGATCTGCCGGCAGCTAATCGACGCTGCCGACAAGTAT
ATTGATCAAAACTTTGCCAAAGTCTCGCAGTCGGAGGAGTTTCTCGCCCT
GGACTGCGAACAATTGCTGGAGCTGATGCGCCGGGACGAACTCAACGTAC
GCACCGAGGAGGTCATCTTCGAGGCCTGCATGAAGTGGGTCAAGTACGCA
GAAGACAAGCGCTCTGAGCTCTTTCCTCAGGTCCTGGCTGCAGTGCGTTT
GCCATTGCTCTCGCCTCAGTTCCTGGCGGACCGTGTGGCCCGCGAGGAAC
TCATTCGATCCTCGCACCAATGCCGTGATCTCCTAGACGAGGCCAAGGAC
TTTCACCTCATGCCCGAGCGCAGGGGTCTGCTGCAGAGCTTTCGCACGCG
CCAGAGATCCGGTGAGTTCTTTACCGGACAAATATACGCCG
BS16840.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:22:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3571-PB | 1617 | CG3571-RB | 1..775 | 17..791 | 3875 | 100 | Plus |
CG3571-PA | 1728 | CG3571-RA | 131..886 | 36..791 | 3780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:35:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
KLHL18-RB | 2199 | CG3571-RB | 271..1045 | 17..791 | 3875 | 100 | Plus |
KLHL18-RC | 2292 | CG3571-RC | 192..947 | 36..791 | 3780 | 100 | Plus |
KLHL18-RA | 2101 | CG3571-RA | 192..947 | 36..791 | 3780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:35:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12009390..12010164 | 791..17 | 3875 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:35:45 has no hits.
BS16840.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:22:06 Download gff for
BS16840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3571-PB | 1..775 | 17..791 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:18:40 Download gff for
BS16840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KLHL18-RB | 271..1045 | 17..791 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:10:55 Download gff for
BS16840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KLHL18-RB | 271..1045 | 17..791 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:10:55 Download gff for
BS16840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12009390..12010164 | 17..791 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:18:40 Download gff for
BS16840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7835112..7835886 | 17..791 | 100 | | Minus |
BS16840.pep Sequence
Translation from 16 to 1632
> BS16840.pep
MPSQLLQVEDQTFSAHRVVLAATIPYFYAMFTNNMAESRIKEITMKESAI
EPSALESLINYVYSGQVRIDNQNVQNLMVGASFLQLSNVRDACASFLISR
FHPHNVLGIRTFADSMICRQLIDAADKYIDQNFAKVSQSEEFLALDCEQL
LELMRRDELNVRTEEVIFEACMKWVKYAEDKRSELFPQVLAAVRLPLLSP
QFLADRVAREELIRSSHQCRDLLDEAKDFHLMPERRGLLQSFRTRQRSGE
FFTGQIYAVGGLASTGESVSTVEIYDPLTKKWKMGEQMSMMRSRVGVAVL
NGKLYAFGGFNGTERLSTVEVYDPRKNKWSQGCAMLCKRSAVGVAALDDC
IYVCGGYDGVTSLNTVEVYYPKSNTWKTVAQMMKYRSAGGVTQLNGYVYA
LGGHDGLSIFDSVERYDQAEDVWVKMSPMLNRRCRLGVATLNGKIYVCGG
YCGNSFLRSVECYDPQTDTWKLVTPMNCKRSRVALAANMGKLWAIGGYDG
ESNLSTVEVYDPETDKWTFMPPMCAHSGGVGAGVIRIE*
BS16840.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:21:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
KLHL18-PB | 538 | CG3571-PB | 1..538 | 1..538 | 2814 | 100 | Plus |
KLHL18-PC | 575 | CG3571-PC | 43..575 | 6..538 | 2785 | 99.8 | Plus |
KLHL18-PA | 575 | CG3571-PA | 43..575 | 6..538 | 2785 | 99.8 | Plus |
dbo-PB | 620 | CG6224-PB | 75..604 | 5..536 | 1142 | 45.6 | Plus |
dbo-PA | 623 | CG6224-PA | 75..604 | 5..536 | 1142 | 45.6 | Plus |