Clone Sequence Records
BS16841.complete Sequence
2411 bp assembled on 2009-12-08
GenBank Submission: KX803236
> BS16841.complete
GAAGTTATCAGTCGACATGGCAATGGTTATATCGACGCGTGCCAAGCTCG
TGATTACCGCGCTGATTCTGTTCTTCCTGCTCGGCATCGTCCTCGTAACG
GGCTCCACAAAGGGATGGTTCAATCCCAACCGCTACAACGGCGAAAGGGT
GGCAGCTAGGATTCAGGCGACAGACATCTTCGACGCCAGTGGAATGCAGC
CCCCGGGACAGACGCAGTACACGCACGAGAGACCGTATCGCGGCATCAAG
GGCGAGAAGGGAGAGCGGGGGCCCAAGGGCGACAGCATTCGCGGTCCGCC
GGGACCGCCGGGTCCGCCAGGACCCAAAGGCGAAACGGCCCCCTATCCGC
CCTTTGTGGAGACGACGAGTGCGGGGGCTAAATACACTGGCGAGTGTACA
TGTAATGCGTCTGATATCCTAGAGGCCATCAAGGACAATGAGTCGTTGCG
GGAATCGTTGCGAGGAGCACCGGGCACGCCGGGCAAGGATGGAAAGCCAG
GTACCCCTGGACACACCGGAGCCACCGGAGTGCCTGGAGCCAGAGGCGCC
CGGGGGTCCGAAGGTGCCCAGGGGCTGAAGGGCGAGCCAGGCGTCGACGG
GCTGCCCGGAGTCATGGGTCCGCCGGGACCACCGGGCCCGCCTGGTTTGC
CCGAGAATTACGATGAATCCCTAATGGTCAACTCGATGGGCGCATTCCGG
GGCACGACGCAGCCAGGAGCCAAAGGTGTGCCCGGCGAGAAAGGTGATGC
CGGCCAGAAAGGAGAGCGTGGCGATCCGGGTCACAAAGGTGCACACGGGC
CCAGCGGCGCAAAGGGTGAGCCTGGCGAACCGGGAACACCCGGACTGCCG
GGATTGCCCGGACAGGTCGGACAGCCCGGCGGACTTGATGGCCTCGCCAG
TGCCAATGGGACCAAGGGCGAGAAGGGCGAGAAAGGCGAGAAGGGCATGC
GGGGTCGGCGCGGCGGAACGGGTGCCACTGGACCAATTGGACCGCCCGGA
AAACCCGGACCCATGGGCGATATTGGACACTCGGGTCGTCCTGGCATGAC
AGGACCAAAGGGTGAAATGGGTCCCAAAGGACCAAAGGGTGATTCCGGCG
GACGCGAAGGGTTAAAGGGTGATAAGGGAGACCGAGGTCAGGATGGTCGC
GATGGCTTGCCAGGACCTCCAGGATTACCCTCTACTGGTGGAGGCGATGG
TGACAGCGGCGGCGTGCAGTACATACCAATGCCAGGACCACCAGGACCTC
CGGGACCGCCAGGTCTGCCGGGTCTTTCCATTTCTGGCCCCAAAGGAGAA
CCCGGAGTGGATTCGCGAAGCTCCTTCTTCGGCGATGCATCCTACTACGG
ACGACCAGAGCCACCGCGCCAGCCAGGACATTCCCACAAGCATGAGGAGA
CCCTGGGGCTTGTCGATGGCGAGGAACCATACTTCTCGGCATCCTCATCG
AACATGAACATGAAGATTGTGCCCGGCGCAGTCACCTTCCAGAACATCGA
TGAAATGACAAAAAAATCGGCCCTGAATCCACCGGGCACATTGGCCTACA
TCACCGAGGAGGAGGCGCTGCTGGTTCGCGTAAACAAGGGATGGCAGTAC
ATTGCGCTGGGAACTCTGGTGCCGATTGCCACGCCCGCTCCGCCCACAAC
GGTGGCACCATCGATGCGATTCGACCTGCAGTCGAAGAATCTGCTCAACA
GTCCACCACCCCTTCTCAATACGCCAACGTTTACAACCGCGCCCGAATAC
GAAACGTGGTATCCGCGAATGCTACGCGTGGCCGCACTGAATGAGCCCTC
CACTGGCGATTTGCAGGGGATTCGCGGGGCGGATTTCGCCTGCTATCGAC
AGGGACGACGGGCAGGACTCCTGGGCACCTTCAAGGCATTCCTCTCATCC
AGGGTACAGAATCTGGACACCATTGTGCGTCCGGCTGACCGGGATCTGCC
CGTGGTGAACACTCGTGGCGATGTGCTCTTCAACTCGTGGAAGGGCATCT
TCAATGGCCAAGGTGGCTTCTTCTCGCAGGCGCCGCGAATCTACAGCTTC
AGTGGCAAGAATGTGATGACGGATTCTACATGGCCCATGAAGATGGTCTG
GCACGGCTCGCTGCCCAATGGCGAGCGTTCCATGGACACCTACTGCGATG
CCTGGCACTCGGGTGACCACTTGAAGGGCAGCTTTGCCAGCAATCTCGAT
GGCCACAAGCTGCTCGAACAGAAGCGCCAGTCCTGCGACAGCAAGCTGAT
CATCCTGTGCGTGGAGGCACTCTCGCAGGATCGCAAACGCAAGAAGCGGG
AAATCGGTGATGGCAGCAGTCACGGCGAAAGTGAAAGTAGGGAGTTCAAG
ACGGCCGATGAGTATGCAGCGCATTTAGAAAATTTACTGCTGTAAAAGCT
TTCTAGACCAT
BS16841.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:23:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mp-RN | 2379 | CG42543-PN | 1..2379 | 17..2395 | 11895 | 100 | Plus |
| Mp-RF | 2364 | CG42543-PF | 1..2364 | 17..2395 | 11635 | 99.4 | Plus |
| Mp-RT | 3069 | CG42543-PT | 839..3069 | 165..2395 | 11155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:23:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mp-RN | 5126 | CG42543-RN | 1301..3679 | 17..2395 | 11895 | 100 | Plus |
| Mp-RF | 4167 | CG42543-RF | 1301..3664 | 17..2395 | 11635 | 99.4 | Plus |
| Mp-RT | 4897 | CG42543-RT | 1220..3450 | 165..2395 | 11155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:23:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7043465..7043721 | 778..1034 | 1285 | 100 | Plus |
| 3L | 28110227 | 3L | 7045108..7045355 | 1111..1358 | 1240 | 100 | Plus |
| 3L | 28110227 | 3L | 7051485..7051722 | 2082..2319 | 1190 | 100 | Plus |
| 3L | 28110227 | 3L | 7051239..7051422 | 1900..2083 | 920 | 100 | Plus |
| 3L | 28110227 | 3L | 7046332..7046488 | 1357..1513 | 785 | 100 | Plus |
| 3L | 28110227 | 3L | 7019749..7019899 | 17..167 | 755 | 100 | Plus |
| 3L | 28110227 | 3L | 7038005..7038152 | 518..665 | 740 | 100 | Plus |
| 3L | 28110227 | 3L | 7035170..7035315 | 234..379 | 730 | 100 | Plus |
| 3L | 28110227 | 3L | 7035744..7035882 | 380..518 | 695 | 100 | Plus |
| 3L | 28110227 | 3L | 7050564..7050696 | 1771..1903 | 665 | 100 | Plus |
| 3L | 28110227 | 3L | 7048841..7048964 | 1606..1729 | 620 | 100 | Plus |
| 3L | 28110227 | 3L | 7041018..7041132 | 665..779 | 575 | 100 | Plus |
| 3L | 28110227 | 3L | 7046586..7046678 | 1514..1606 | 465 | 100 | Plus |
| 3L | 28110227 | 3L | 7044925..7045007 | 1033..1115 | 400 | 98.8 | Plus |
| 3L | 28110227 | 3L | 7051974..7052052 | 2317..2395 | 395 | 100 | Plus |
| 3L | 28110227 | 3L | 7034969..7035038 | 164..233 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:23:56 has no hits.
BS16841.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:17 Download gff for
BS16841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33171-RE | 1276..3652 | 17..2393 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:16 Download gff for
BS16841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mp-RN | 1301..3677 | 17..2393 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:09 Download gff for
BS16841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33171-RE | 1276..3652 | 17..2393 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:33 Download gff for
BS16841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mp-RN | 1301..3677 | 17..2393 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:33 Download gff for
BS16841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7051486..7051722 | 2083..2319 | 100 | -> | Plus |
| 3L | 7051977..7052050 | 2320..2393 | 100 | | Plus |
| 3L | 7050565..7050695 | 1772..1902 | 100 | -> | Plus |
| 3L | 7051242..7051421 | 1903..2082 | 100 | -> | Plus |
| 3L | 7019749..7019898 | 17..166 | 100 | -> | Plus |
| 3L | 7034972..7035038 | 167..233 | 100 | -> | Plus |
| 3L | 7035170..7035315 | 234..379 | 100 | -> | Plus |
| 3L | 7035744..7035881 | 380..517 | 100 | -> | Plus |
| 3L | 7038005..7038151 | 518..664 | 100 | -> | Plus |
| 3L | 7041018..7041131 | 665..778 | 100 | -> | Plus |
| 3L | 7043466..7043720 | 779..1033 | 100 | -> | Plus |
| 3L | 7044926..7045003 | 1034..1111 | 100 | -> | Plus |
| 3L | 7045109..7045355 | 1112..1358 | 100 | -> | Plus |
| 3L | 7046334..7046488 | 1359..1513 | 100 | -> | Plus |
| 3L | 7046586..7046678 | 1514..1606 | 100 | -> | Plus |
| 3L | 7048842..7048964 | 1607..1729 | 100 | -> | Plus |
| 3L | 7049550..7049576 | 1730..1756 | 100 | -> | Plus |
| 3L | 7050173..7050187 | 1757..1771 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:16 Download gff for
BS16841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7043665..7043795 | 1772..1902 | 100 | -> | Plus |
| arm_3L | 7044342..7044521 | 1903..2082 | 100 | -> | Plus |
| arm_3L | 7012849..7012998 | 17..166 | 100 | -> | Plus |
| arm_3L | 7028072..7028138 | 167..233 | 100 | -> | Plus |
| arm_3L | 7028270..7028415 | 234..379 | 100 | -> | Plus |
| arm_3L | 7028844..7028981 | 380..517 | 100 | -> | Plus |
| arm_3L | 7031105..7031251 | 518..664 | 100 | -> | Plus |
| arm_3L | 7034118..7034231 | 665..778 | 100 | -> | Plus |
| arm_3L | 7036566..7036820 | 779..1033 | 100 | -> | Plus |
| arm_3L | 7038026..7038103 | 1034..1111 | 100 | -> | Plus |
| arm_3L | 7038209..7038455 | 1112..1358 | 100 | -> | Plus |
| arm_3L | 7039434..7039588 | 1359..1513 | 100 | -> | Plus |
| arm_3L | 7039686..7039778 | 1514..1606 | 100 | -> | Plus |
| arm_3L | 7041942..7042064 | 1607..1729 | 100 | -> | Plus |
| arm_3L | 7042650..7042676 | 1730..1756 | 100 | -> | Plus |
| arm_3L | 7043273..7043287 | 1757..1771 | 100 | -> | Plus |
| arm_3L | 7044586..7044822 | 2083..2319 | 100 | -> | Plus |
| arm_3L | 7045077..7045150 | 2320..2393 | 100 | | Plus |
BS16841.3prime Sequence
837 bp (747 high quality bases) assembled on 2007-05-15
> BS16841.3prime
ATGGTCTAGAAAGCTTTTACAGCAGTAAATTTTCTAAATGCGCTGCATAC
TCATCGGCCGTCTTGAACTCCCTACTTTCACTTTCGCCGTGACTGCTGCC
ATCACCGATTTCCCGCTTCTTGCGTTTGCGATCCTGCGAGAGTGCCTCCA
CGCACAGGATGATCAGCTTGCTGTCGCAGGACTGGCGCTTCTGTTCGAGC
AGCTTGTGGCCATCGAGATTGCTGGCAAAGCTGCCCTTCAAGTGGTCACC
CGAGTGCCAGGCATCGCAGTAGGTGTCCATGGAACGCTCGCCATTGGGCA
GCGAGCCGTGCCAGACCATCTTCATGGGCCATGTAGAATCCGTCATCACA
TTCTTGCCACTGAAGCTGTAGATTCGCGGCGCCTGCGAGAAGAAGCCACC
TTGGCCATTGAAGATGCCCTTCCACGAGTTGAAGAGCACATCGCCACGAG
TGTTCACCACGGGCAGATCCCGGTCAGCCGGACGCACAATGGTGTCCAGA
TTCTGTACCCTGGATGAGAGGAATGCCTTGAAGGTGCCCAGGAGTCCTGC
CCGTCGTCCCTGTCGATAGCAGGCGAAATCCGCCCCGCGAATCCCCTGCA
AATCGCCAGTGGAGGGCTCATTCAGTGCGGCCACGCGTAGCATTCGCGGA
TACCACGTTTCGTATTCGGGCGCGGTTGTAAACGTTGGCGTATTGAGAAG
GGGTGGTGGACTGTTGAGCAGATTCTTCGACTGCAGGTCGAATCGCATCG
ATGGTGCCACCGTTGTGGGCGGAGCGGGCGTGGCAATCGGCACCAGAGTT
CCCAGCGCAATGTACTGCCATCCCCTGTTTACGCGAA
BS16841.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:28:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33171-PE | 2379 | CG33171-RE | 1559..2379 | 837..17 | 4080 | 99.8 | Minus |
| CG33171-PC | 2337 | CG33171-RC | 1713..2337 | 641..17 | 3125 | 100 | Minus |
| CG33171-PC | 2337 | CG33171-RC | 1559..1713 | 837..683 | 750 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:43:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mp-RT | 4897 | CG42543-RT | 2630..3450 | 837..17 | 4090 | 99.9 | Minus |
| Mp-RN | 5126 | CG42543-RN | 2859..3679 | 837..17 | 4090 | 99.9 | Minus |
| Mp-RO | 3901 | CG42543-RO | 2756..3398 | 659..17 | 3215 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:43:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7051485..7051722 | 330..93 | 1190 | 100 | Minus |
| 3L | 28110227 | 3L | 7051239..7051422 | 512..329 | 920 | 100 | Minus |
| 3L | 28110227 | 3L | 7050564..7050696 | 641..509 | 665 | 100 | Minus |
| 3L | 28110227 | 3L | 7048841..7048964 | 806..683 | 620 | 100 | Minus |
| 3L | 28110227 | 3L | 7051974..7052052 | 95..17 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:43:37 has no hits.
BS16841.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:28:03 Download gff for
BS16841.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33171-PE | 1561..2379 | 17..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:17:07 Download gff for
BS16841.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mp-RN | 2859..3681 | 13..837 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:49 Download gff for
BS16841.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mp-RN | 2859..3681 | 13..837 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:49 Download gff for
BS16841.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7046647..7046678 | 806..837 | 96 | -> | Minus |
| 3L | 7048842..7048964 | 683..805 | 100 | -> | Minus |
| 3L | 7049550..7049576 | 656..682 | 100 | -> | Minus |
| 3L | 7050173..7050187 | 641..655 | 100 | -> | Minus |
| 3L | 7050565..7050695 | 510..640 | 100 | -> | Minus |
| 3L | 7051242..7051421 | 330..509 | 100 | -> | Minus |
| 3L | 7051486..7051722 | 93..329 | 100 | -> | Minus |
| 3L | 7051977..7052054 | 13..92 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:17:07 Download gff for
BS16841.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7042650..7042676 | 656..682 | 100 | -> | Minus |
| arm_3L | 7043273..7043287 | 641..655 | 100 | -> | Minus |
| arm_3L | 7043665..7043795 | 510..640 | 100 | -> | Minus |
| arm_3L | 7039747..7039778 | 806..837 | 96 | -> | Minus |
| arm_3L | 7041942..7042064 | 683..805 | 100 | -> | Minus |
| arm_3L | 7044342..7044521 | 330..509 | 100 | -> | Minus |
| arm_3L | 7044586..7044822 | 93..329 | 100 | -> | Minus |
| arm_3L | 7045077..7045154 | 13..92 | 97 | | Minus |
BS16841.5prime Sequence
859 bp (782 high quality bases) assembled on 2007-05-15
> BS16841.5prime
GAAGTTATCAGTCGACATGGCAATGGTTATATCGACGCGTGCCAAGCTCG
TGATTACCGCGCTGATTCTGTTCTTCCTGCTCGGCATCGTCCTCGTAACG
GGCTCCACAAAGGGATGGTTCAATCCCAACCGCTACAACGGCGAAAGGGT
GGCAGCTAGGATTCAGGCGACAGACATCTTCGACGCCAGTGGAATGCAGC
CCCCGGGACAGACGCAGTACACGCACGAGAGACCGTATCGCGGCATCAAG
GGCGAGAAGGGAGAGCGGGGGCCCAAGGGCGACAGCATTCGCGGTCCGCC
GGGACCGCCGGGTCCGCCAGGACCCAAAGGCGAAACGGCCCCCTATCCGC
CCTTTGTGGAGACGACGAGTGCGGGGGCTAAATACACTGGCGAGTGTACA
TGTAATGCGTCTGATATCCTAGAGGCCATCAAGGACAATGAGTCGTTGCG
GGAATCGTTGCGAGGAGCACCGGGCACGCCGGGCAAGGATGGAAAGCCAG
GTACCCCTGGACACACCGGAGCCACCGGAGTGCCTGGAGCCAGAGGCGCC
CGGGGGTCCGAAGGTGCCCAGGGGCTGAAGGGCGAGCCAGGCGTCGACGG
GCTGCCCGGAGTCATGGGTCCGCCGGGACCACCGGGCCCGCCTGGTTTGC
CCGAGAATTACGATGAATCCCTAATGGTCAACTCGATGGGCGCATTCCGG
GGCACGACGCAGCCAGGAGCCAAAGGTGTGCCCGGCGAGAAAGGTGATGC
CGGCCAGAAAGGAGAGCGTGGCGATCCGGGTCACAAAGGTGCACACGGGC
CCAGCGGCGCAAAGGGTGAGCCTGGCGAACCGGGGACACCCGGACTGCCG
GGATTTGCC
BS16841.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:22:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33171-PE | 2379 | CG33171-RE | 1..839 | 17..855 | 4170 | 99.8 | Plus |
| CG33171-PC | 2337 | CG33171-RC | 1..839 | 17..855 | 4170 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:08:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mp-RS | 5162 | CG42543-RS | 1301..2139 | 17..855 | 4180 | 99.9 | Plus |
| Mp-RN | 5126 | CG42543-RN | 1301..2139 | 17..855 | 4180 | 99.9 | Plus |
| Mp-RF | 4167 | CG42543-RF | 1301..2139 | 17..855 | 4180 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:08:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7019749..7019899 | 17..167 | 755 | 100 | Plus |
| 3L | 28110227 | 3L | 7038005..7038152 | 518..665 | 740 | 100 | Plus |
| 3L | 28110227 | 3L | 7035170..7035315 | 234..379 | 730 | 100 | Plus |
| 3L | 28110227 | 3L | 7035744..7035882 | 380..518 | 695 | 100 | Plus |
| 3L | 28110227 | 3L | 7041018..7041132 | 665..779 | 575 | 100 | Plus |
| 3L | 28110227 | 3L | 7043465..7043542 | 778..855 | 375 | 98.7 | Plus |
| 3L | 28110227 | 3L | 7034969..7035038 | 164..233 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:08:45 has no hits.
BS16841.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:22:16 Download gff for
BS16841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33171-PC | 1..842 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:40:04 Download gff for
BS16841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mp-RF | 1290..2142 | 6..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:33:09 Download gff for
BS16841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mp-RF | 1290..2142 | 6..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:33:09 Download gff for
BS16841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7038005..7038151 | 518..664 | 100 | -> | Plus |
| 3L | 7041018..7041131 | 665..778 | 100 | -> | Plus |
| 3L | 7043466..7043545 | 779..859 | 97 | | Plus |
| 3L | 7035170..7035315 | 234..379 | 100 | -> | Plus |
| 3L | 7035744..7035881 | 380..517 | 100 | -> | Plus |
| 3L | 7019738..7019898 | 6..166 | 97 | -> | Plus |
| 3L | 7034972..7035038 | 167..233 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:40:04 Download gff for
BS16841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7012838..7012998 | 6..166 | 97 | -> | Plus |
| arm_3L | 7028072..7028138 | 167..233 | 100 | -> | Plus |
| arm_3L | 7028270..7028415 | 234..379 | 100 | -> | Plus |
| arm_3L | 7028844..7028981 | 380..517 | 100 | -> | Plus |
| arm_3L | 7031105..7031251 | 518..664 | 100 | -> | Plus |
| arm_3L | 7034118..7034231 | 665..778 | 100 | -> | Plus |
| arm_3L | 7036566..7036645 | 779..859 | 97 | | Plus |
BS16841.pep Sequence
Translation from 16 to 2394
> BS16841.pep
MAMVISTRAKLVITALILFFLLGIVLVTGSTKGWFNPNRYNGERVAARIQ
ATDIFDASGMQPPGQTQYTHERPYRGIKGEKGERGPKGDSIRGPPGPPGP
PGPKGETAPYPPFVETTSAGAKYTGECTCNASDILEAIKDNESLRESLRG
APGTPGKDGKPGTPGHTGATGVPGARGARGSEGAQGLKGEPGVDGLPGVM
GPPGPPGPPGLPENYDESLMVNSMGAFRGTTQPGAKGVPGEKGDAGQKGE
RGDPGHKGAHGPSGAKGEPGEPGTPGLPGLPGQVGQPGGLDGLASANGTK
GEKGEKGEKGMRGRRGGTGATGPIGPPGKPGPMGDIGHSGRPGMTGPKGE
MGPKGPKGDSGGREGLKGDKGDRGQDGRDGLPGPPGLPSTGGGDGDSGGV
QYIPMPGPPGPPGPPGLPGLSISGPKGEPGVDSRSSFFGDASYYGRPEPP
RQPGHSHKHEETLGLVDGEEPYFSASSSNMNMKIVPGAVTFQNIDEMTKK
SALNPPGTLAYITEEEALLVRVNKGWQYIALGTLVPIATPAPPTTVAPSM
RFDLQSKNLLNSPPPLLNTPTFTTAPEYETWYPRMLRVAALNEPSTGDLQ
GIRGADFACYRQGRRAGLLGTFKAFLSSRVQNLDTIVRPADRDLPVVNTR
GDVLFNSWKGIFNGQGGFFSQAPRIYSFSGKNVMTDSTWPMKMVWHGSLP
NGERSMDTYCDAWHSGDHLKGSFASNLDGHKLLEQKRQSCDSKLIILCVE
ALSQDRKRKKREIGDGSSHGESESREFKTADEYAAHLENLLL*
BS16841.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:02:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mp-PN | 792 | CG42543-PN | 1..792 | 1..792 | 4289 | 100 | Plus |
| Mp-PF | 787 | CG42543-PF | 1..787 | 1..792 | 4238 | 99.4 | Plus |
| Mp-PE | 778 | CG33171-PC | 1..778 | 1..792 | 4180 | 98.2 | Plus |
| Mp-PS | 804 | CG42543-PS | 1..804 | 1..792 | 4143 | 95.1 | Plus |
| Mp-PT | 1022 | CG42543-PT | 280..1022 | 50..792 | 4044 | 99.9 | Plus |
