Clone Sequence Records
BS16846.3prime Sequence
931 bp (777 high quality bases) assembled on 2007-05-15
> BS16846.3prime
ATGGTCTAGAAAGCTTCTATACATTCGTGGGCGCGTCCATGCCGCAGATA
ACCGACTTAACCACCGACGCCGCCGAAATGGCAGCGAAGTTTTGCCACTT
CCTGGTGGACGTGCCGTCCTTGTAGTCAGCGATGCCCTTCACCAGTATAA
AGCTCTCTCTGCAATTGCCAATGATGCTGTCCAGCACGCTGCTCATCTCC
ACATCGGTGGCCAGTAGGCCGTACTTCCTGGCGAACTGGGTGCGCAGCTC
GTCGCTCCTCACCAGATCCCTTCCGGATCCAATGGGACCCAGATGGAGTC
GCAACCGATTGACACCGTCCACCTCGTCGGCGGCAATGGGATGGGCCACC
TCGATCACCTCGTTATTTCCAATGTTCATAAACAGTTTGTCCGTCCGCGC
GTCCGGCCGGTTGAAGTCGGCATCCGTCTTCTGGGCCAACGCCTGTTGGG
CCTGGTTCAGGTAGTCCTCCCACGGCCGCTTCACCTGCATGTTGGCCTGC
AGGCTCTCGGCGATCTGCTGCAGCGAATCGTTCACCGGGAAGTAGGTCTT
CACGTCCTCGCCGCTCTTGTACAAGTACACGTACGGTTTCTCCTTGCTAT
TGCTGATCAGTGCCCGCTGTTTGTCCACATACGAGATGACCACATCGCCC
AGTCGCACGTGCTTCTTATAGTCCGTGTAGTGGGGAACGCCACCGGCTAC
GCCCACGATGAAAACATAGTCGACCTTTTGGAATGTGCCCAACAGACGGG
TTGTGGTATTGCCCGTCGCCGTCATCGCCTCCCGATTGCTGCCCACCGAC
GGGAGCTTGGTGCTCACGATCCTGTGCGCCCCGATATTGCCCAGAGTATA
CACATTCGATTCGCCGACTGTGGTGTATCGGACGAATGTCTCCTTGTTCT
CGAGCATTGCGTCCACGGCGAGCTTCTCGCA
BS16846.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:27:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12065-PC | 1926 | CG12065-RC | 1012..1926 | 931..17 | 4575 | 100 | Minus |
| CG12065-PD | 1926 | CG12065-RD | 1012..1926 | 931..17 | 4575 | 100 | Minus |
| CG12065-PA | 2064 | CG12065-RA | 1214..2064 | 867..17 | 4255 | 100 | Minus |
| CG12065-PB | 2064 | CG12065-RB | 1214..2064 | 867..17 | 4255 | 100 | Minus |
| CG12065-PA | 2064 | CG12065-RA | 1093..1159 | 931..865 | 335 | 100 | Minus |
| CG12065-PB | 2064 | CG12065-RB | 1093..1159 | 931..865 | 335 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:44:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12065-RF | 2658 | CG12065-RF | 1383..2297 | 931..17 | 4575 | 100 | Minus |
| CG12065-RE | 2652 | CG12065-RE | 1377..2291 | 931..17 | 4575 | 100 | Minus |
| CG12065-RD | 2515 | CG12065-RD | 1240..2154 | 931..17 | 4575 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:44:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8587586..8588167 | 598..17 | 2910 | 100 | Minus |
| X | 23542271 | X | 8587257..8587525 | 865..597 | 1345 | 100 | Minus |
| X | 23542271 | X | 8586179..8586246 | 931..864 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:44:53 has no hits.
BS16846.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:27:58 Download gff for
BS16846.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12065-PD | 1013..1926 | 17..930 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:48:36 Download gff for
BS16846.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12065-RD | 1243..2159 | 14..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:19:25 Download gff for
BS16846.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12065-RD | 1241..2157 | 14..930 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:19:25 Download gff for
BS16846.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8586180..8586245 | 865..930 | 100 | -> | Minus |
| X | 8587258..8587525 | 597..864 | 100 | -> | Minus |
| X | 8587588..8588170 | 14..596 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:48:36 Download gff for
BS16846.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8480213..8480278 | 865..930 | 100 | -> | Minus |
| arm_X | 8481291..8481558 | 597..864 | 100 | -> | Minus |
| arm_X | 8481621..8482203 | 14..596 | 99 | | Minus |
BS16846.5prime Sequence
922 bp (771 high quality bases) assembled on 2007-05-15
> BS16846.5prime
GAAGTTATCAGTCGACATGTCGGAGCGCAGGAGTCACATACAGATGGCGC
CGCCACCGCCGCCCCCCAAGCCAAACAAATCGCAGACAGCCAATGGAAAT
GGTATTGGGAACGGCACAGGCATAGGAACGGGCACTGGCAACGGAACCCT
GCCGAATGGCAATAAAAACTATAACAAAATTGTCGCAGTCCAAGACCAGG
AGCCGCTGGCTCAGAACTCGAGCGGCGTTCAAAGGAGCCAGTCGCCACCA
CGCACAGAACAGGTTGTGATGACGCCACGCGGTAAAACGGCCAACAGTAC
GGTGATCCTCATCGAACGCAAACTGGTCGATGAGATCAATGATCGCGTTC
ATGTCGCCGGCGGTGATCATACGGGCATCATCATTAACAAGGACACGGTC
GCCGGACAGAAGAGCGCCAGCAAGGCGGCAGCGCTATCGCTGGAATTCCG
CGTCTTTCTGGTCAGCGCCAATACGGGCAAGCATTCGCAGGAGTCGCGCA
CCCTGCGCTTCTGGTTCCGCGACTGGCTGACCAACGAGGAGAAGCAGGCG
CACATAGCCCAGGACTTCTTCAAGGAGCTGGTCAGTCCGCAGGACTTTCC
CAGAGACTACGTGGGCTTCATCAAGAAGATAATGAAGCTCCTGCAGCACG
GATACTCGGAGATCCAGTCGATCGAGATTGAGCTGCGCATCCTGGAGGAG
ACATCCGCACCACCCTCGCGACCACTTTCGCTCGAGGAATCGCAGTTCGA
ATCACCGCCGTTGACTCAGGAGAAGGTGCTGGAGCTCATCGAGCANGCAT
ATCCCAATCCCGTGTCCCCCGAGGATCTGGCCCAGGATTACNGCTGGAGC
GAGCAGGATGTGCTGCTGGTGATCAAGTCACTGCAGGAGCGCGGTCTGAT
CAAGTCGATGGAGTACAATGCG
BS16846.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:22:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12065-PC | 1926 | CG12065-RC | 1..906 | 17..922 | 4467 | 99.6 | Plus |
| CG12065-PD | 1926 | CG12065-RD | 1..906 | 17..922 | 4467 | 99.6 | Plus |
| CG12065-PA | 2064 | CG12065-RA | 1..709 | 17..725 | 3545 | 100 | Plus |
| CG12065-PB | 2064 | CG12065-RB | 1..709 | 17..725 | 3545 | 100 | Plus |
| CG12065-PA | 2064 | CG12065-RA | 791..987 | 726..922 | 922 | 98.4 | Plus |
| CG12065-PB | 2064 | CG12065-RB | 791..987 | 726..922 | 922 | 98.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:08:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12065-RF | 2658 | CG12065-RF | 371..1277 | 16..922 | 4498 | 99.7 | Plus |
| CG12065-RE | 2652 | CG12065-RE | 365..1271 | 16..922 | 4498 | 99.7 | Plus |
| CG12065-RD | 2515 | CG12065-RD | 228..1134 | 16..922 | 4498 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:08:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8583666..8584255 | 16..605 | 2950 | 100 | Plus |
| X | 23542271 | X | 8584454..8584575 | 604..725 | 610 | 100 | Plus |
| X | 23542271 | X | 8585810..8585916 | 726..832 | 524 | 99.1 | Plus |
| X | 23542271 | X | 8585986..8586073 | 835..922 | 429 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-04 21:08:06 has no hits.
BS16846.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:22:11 Download gff for
BS16846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12065-PD | 1..906 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:29:40 Download gff for
BS16846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12065-RD | 224..1136 | 9..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:55:10 Download gff for
BS16846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12065-RD | 222..1134 | 9..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:55:10 Download gff for
BS16846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8583660..8584255 | 9..605 | 99 | -> | Plus |
| X | 8584456..8584575 | 606..725 | 100 | -> | Plus |
| X | 8585810..8585918 | 726..834 | 98 | -> | Plus |
| X | 8585986..8586073 | 835..922 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:29:40 Download gff for
BS16846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8477693..8478288 | 9..605 | 99 | -> | Plus |
| arm_X | 8478489..8478608 | 606..725 | 100 | -> | Plus |
| arm_X | 8479843..8479951 | 726..834 | 98 | -> | Plus |
| arm_X | 8480019..8480106 | 835..922 | 98 | | Plus |
BS16846.complete Sequence
1958 bp assembled on 2009-12-07
GenBank Submission: KX805940
> BS16846.complete
GAAGTTATCAGTCGACATGTCGGAGCGCAGGAGTCACATACAGATGGCGC
CGCCACCGCCGCCCCCCAAGCCAAACAAATCGCAGACAGCCAATGGAAAT
GGTATTGGGAACGGCACAGGCATAGGAACGGGCACTGGCAACGGAACCCT
GCCGAATGGCAATAAAAACTATAACAAAATTGTCGCAGTCCAAGACCAGG
AGCCGCTGGCTCAGAACTCGAGCGGCGTTCAAAGGAGCCAGTCGCCACCA
CGCACAGAACAGGTTGTGATGACGCCACGCGGTAAAACGGCCAACAGTAC
GGTGATCCTCATCGAACGCAAACTGGTCGATGAGATCAATGATCGCGTTC
ATGTCGCCGGCGGTGATCATACGGGCATCATCATTAACAAGGACACGGTC
GCCGGACAGAAGAGCGCCAGCAAGGCGGCAGCGCTATCGCTGGAATTCCG
CGTCTTTCTGGTCAGCGCCAATACGGGCAAGCATTCGCAGGAGTCGCGCA
CCCTGCGCTTCTGGTTCCGCGACTGGCTGACCAACGAGGAGAAGCAGGCG
CACATAGCCCAGGACTTCTTCAAGGAGCTGGTCAGTCCGCAGGACTTTCC
CAGAGACTACGTGGGCTTCATCAAGAAGATAATGAAGCTCCTGCAGCACG
GATACTCGGAGATCCAGTCGATCGAGATTGAGCTGCGCATCCTGGAGGAG
ACATCCGCACCACCCTCGCGACCACTTTCGCTCGAGGAATCGCAGTTCGA
ATCACCGCCGTTGACTCAGGAGAAGGTGCTGGAGCTCATCGAGCAGGCAT
ATCCCAATCCCGTGTCCCCCGAGGATCTGGCCAAGGATTACGGCTGGAGC
GAGCAGGATGTGCTGCTGGTGATCAAGTCACTGCAGGAGCGCGGTCTGAT
CAAGTCGATGGAGTACAATGCGTACACTCGCATCCATCACGAGGACAAGG
AGATTAAGGTGGTCAAGCAGATGCCCACGATCGCCTCCAACAAGCAGCCC
ACCATTGCCATCATCACGGCGCAATATTGCGAGAAGCTCGCCGTGGACGC
AATGCTCGAGAACAAGGAGACATTCGTCCGATACACCACAGTCGGCGAAT
CGAATGTGTATACTCTGGGCAATATCGGGGCGCACAGGATCGTGAGCACC
AAGCTCCCGTCGGTGGGCAGCAATCGGGAGGCGATGACGGCGACGGGCAA
TACCACAACCCGTCTGTTGGGCACATTCCAAAAGGTCGACTATGTTTTCA
TCGTGGGCGTAGCCGGTGGCGTTCCCCACTACACGGACTATAAGAAGCAC
GTGCGACTGGGCGATGTGGTCATCTCGTATGTGGACAAACAGCGGGCACT
GATCAGCAATAGCAAGGAGAAACCGTACGTGTACTTGTACAAGAGCGGCG
AGGACGTGAAGACCTACTTCCCGGTGAACGATTCGCTGCAGCAGATCGCC
GAGAGCCTGCAGGCCAACATGCAGGTGAAGCGGCCGTGGGAGGACTACCT
GAACCAGGCCCAACAGGCGTTGGCCCAGAAGACGGATGCCGACTTCAACC
GGCCGGACGCGCGGACGGACAAACTGTTTATGAACATTGGAAATAACGAG
GTGATCGAGGTGGCCCATCCCATTGCCGCCGACGAGGTGGACGGTGTCAA
TCGGTTGCGACTCCATCTGGGTCCCATTGGATCCGGAAGGGATCTGGTGA
GGAGCGACGAGCTGCGCACCCAGTTCGCCAGGAAGTACGGCCTACTGGCC
ACCGATGTGGAGATGAGCAGCGTGCTGGACAGCATCATTGGCAATTGCAG
AGAGAGCTTTATACTGGTGAAGGGCATCGCTGACTACAAGGACGGCACGT
CCACCAGGAAGTGGCAAAACTTCGCTGCCATTTCGGCGGCGTCGGTGGTT
AAGTCGGTTATCTGCGGCATGGACGCGCCCACGAATGTATAGAAGCTTTC
TAGACCAT
BS16846.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:11:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12065-RF | 1926 | CG12065-PF | 1..1926 | 17..1942 | 9630 | 100 | Plus |
| CG12065-RE | 1926 | CG12065-PE | 1..1926 | 17..1942 | 9630 | 100 | Plus |
| CG12065-RD | 1926 | CG12065-PD | 1..1926 | 17..1942 | 9630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:11:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12065-RF | 2658 | CG12065-RF | 371..2297 | 16..1942 | 9635 | 100 | Plus |
| CG12065-RE | 2652 | CG12065-RE | 365..2291 | 16..1942 | 9635 | 100 | Plus |
| CG12065-RD | 2515 | CG12065-RD | 228..2154 | 16..1942 | 9635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:11:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8583666..8584255 | 16..605 | 2950 | 100 | Plus |
| X | 23542271 | X | 8587586..8588167 | 1361..1942 | 2910 | 100 | Plus |
| X | 23542271 | X | 8587257..8587525 | 1094..1362 | 1345 | 100 | Plus |
| X | 23542271 | X | 8585986..8586246 | 835..1095 | 1305 | 100 | Plus |
| X | 23542271 | X | 8584454..8584575 | 604..725 | 610 | 100 | Plus |
| X | 23542271 | X | 8585810..8585919 | 726..835 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:11:45 has no hits.
BS16846.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:38 Download gff for
BS16846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12065-RC | 339..2264 | 17..1942 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:19 Download gff for
BS16846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12065-RD | 231..2156 | 17..1942 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:55:53 Download gff for
BS16846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12065-RC | 339..2264 | 17..1942 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:54 Download gff for
BS16846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12065-RD | 229..2154 | 17..1942 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:54 Download gff for
BS16846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8587258..8587525 | 1095..1362 | 100 | -> | Plus |
| X | 8583667..8584255 | 17..605 | 100 | -> | Plus |
| X | 8584456..8584575 | 606..725 | 100 | -> | Plus |
| X | 8585810..8585918 | 726..834 | 100 | -> | Plus |
| X | 8585986..8586245 | 835..1094 | 100 | -> | Plus |
| X | 8587588..8588167 | 1363..1942 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:19 Download gff for
BS16846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8479843..8479951 | 726..834 | 100 | -> | Plus |
| arm_X | 8477700..8478288 | 17..605 | 100 | -> | Plus |
| arm_X | 8478489..8478608 | 606..725 | 100 | -> | Plus |
| arm_X | 8480019..8480278 | 835..1094 | 100 | -> | Plus |
| arm_X | 8481291..8481558 | 1095..1362 | 100 | -> | Plus |
| arm_X | 8481621..8482200 | 1363..1942 | 100 | | Plus |
BS16846.pep Sequence
Translation from 16 to 1941
> BS16846.pep
MSERRSHIQMAPPPPPPKPNKSQTANGNGIGNGTGIGTGTGNGTLPNGNK
NYNKIVAVQDQEPLAQNSSGVQRSQSPPRTEQVVMTPRGKTANSTVILIE
RKLVDEINDRVHVAGGDHTGIIINKDTVAGQKSASKAAALSLEFRVFLVS
ANTGKHSQESRTLRFWFRDWLTNEEKQAHIAQDFFKELVSPQDFPRDYVG
FIKKIMKLLQHGYSEIQSIEIELRILEETSAPPSRPLSLEESQFESPPLT
QEKVLELIEQAYPNPVSPEDLAKDYGWSEQDVLLVIKSLQERGLIKSMEY
NAYTRIHHEDKEIKVVKQMPTIASNKQPTIAIITAQYCEKLAVDAMLENK
ETFVRYTTVGESNVYTLGNIGAHRIVSTKLPSVGSNREAMTATGNTTTRL
LGTFQKVDYVFIVGVAGGVPHYTDYKKHVRLGDVVISYVDKQRALISNSK
EKPYVYLYKSGEDVKTYFPVNDSLQQIAESLQANMQVKRPWEDYLNQAQQ
ALAQKTDADFNRPDARTDKLFMNIGNNEVIEVAHPIAADEVDGVNRLRLH
LGPIGSGRDLVRSDELRTQFARKYGLLATDVEMSSVLDSIIGNCRESFIL
VKGIADYKDGTSTRKWQNFAAISAASVVKSVICGMDAPTNV*
BS16846.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:35:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12065-PF | 641 | CG12065-PF | 1..641 | 1..641 | 3290 | 100 | Plus |
| CG12065-PE | 641 | CG12065-PE | 1..641 | 1..641 | 3290 | 100 | Plus |
| CG12065-PD | 641 | CG12065-PD | 1..641 | 1..641 | 3290 | 100 | Plus |
| CG12065-PC | 641 | CG12065-PC | 1..641 | 1..641 | 3290 | 100 | Plus |
| CG12065-PB | 687 | CG12065-PB | 1..687 | 1..641 | 3219 | 93.2 | Plus |
