Clone Sequence Records
BS16858.3prime Sequence
872 bp (756 high quality bases) assembled on 2007-05-15
> BS16858.3prime
ATGGTCTAGAAAGCTTTTACTCCTTCTTGGGCAACTCACTGTTCATGATG
CTGAGCCGGCGGATGTTGGGCTTGTCATAATCCTCCATCGAGATGCCGCG
CGACAGGCGCCGCGATCCGTTGGCCCCCTCCAGCGATCCGGAGCTAGCCG
TGGAGAAGGCGCGTCCGCGATCCACGCCTGGCATCACCACCGACGTGAGC
AGCCCCTGTCCCTTGCAGAACAGCAGAATGGATTGGGCCACCTTTCCGGG
AGCATCGGCGAGGACATCGCCAGCCCGCTCGATCTTCAGAATGGTGACCC
TCTCCTTCTCCACGTCGCGATGGAGCTTCTCGACCATGGACGCATAGGGG
CTGAGCATGCCCGTGATCAGGATGACATCTACCTTGCAGCCCTTGAGCGT
AAGGTCCTTGCGATTCATAAATGCTTTGACATAGAGACCGATGTTCTTGC
TGTTTAGGGATCGGTGAAGACGCTTCTGGTACTCGGCCACGATCTTCTCC
TTGTCCGGATTCTCGCCCACGATTTGCTCCATAACATGTCCGAATTTGTG
GTACATCAGAAAGCTCTCAGCCGACTGGGCCACCTCGTCGCTCTTCCAGC
TAATGAACTTGTTCTTGAAGGACTGCACTACACTGGCGGCGCTGCCAGTC
GCGTTGATCAGGATGAGGCCCAGCACCCGGCTGGGATGGGCCAGTCCGAA
GCGGGCCAGGACATTGGCTCCGGCACCCTCGCCTAGGCCGATCACGTACT
TTACGTGCAGGTAGTCCAGCACGGTGACCAGGTCCTCGCCCAGGGACTGG
AGCGAGGGAAACGGAAAGCCGTCAGCCAGGGCCTCCGCGTTGTCCGCGTG
CCCCGGCACGTCCACGTGGATG
BS16858.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:28:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2082-PB | 1095 | CG2082-RB | 240..1095 | 872..17 | 4280 | 100 | Minus |
| CG2082-PA | 1098 | CG2082-RA | 589..1098 | 526..17 | 2550 | 100 | Minus |
| CG2082-PC | 1086 | CG2082-RC | 577..1086 | 526..17 | 2550 | 100 | Minus |
| CG2082-PA | 1098 | CG2082-RA | 252..588 | 872..536 | 1685 | 100 | Minus |
| CG2082-PC | 1086 | CG2082-RC | 240..576 | 872..536 | 1685 | 100 | Minus |
| CG2082-PD | 606 | CG2082-RD | 252..588 | 872..536 | 1685 | 100 | Minus |
| CG2082-PE | 312 | CG2082-RE | 46..294 | 784..536 | 1245 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:59:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2082-RK | 2290 | CG2082-RK | 567..1423 | 872..16 | 4285 | 100 | Minus |
| CG2082-RG | 1872 | CG2082-RG | 449..1305 | 872..16 | 4285 | 100 | Minus |
| CG2082-RB | 2280 | CG2082-RB | 557..1413 | 872..16 | 4285 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:59:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5762172..5762436 | 608..872 | 1325 | 100 | Plus |
| 3R | 32079331 | 3R | 5760137..5760371 | 16..250 | 1175 | 100 | Plus |
| 3R | 32079331 | 3R | 5760630..5760792 | 251..413 | 815 | 100 | Plus |
| 3R | 32079331 | 3R | 5760849..5760963 | 414..528 | 575 | 100 | Plus |
| 3R | 32079331 | 3R | 5761644..5761719 | 534..609 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:59:38 has no hits.
BS16858.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:28:22 Download gff for
BS16858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-PB | 240..1095 | 17..872 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:47:58 Download gff for
BS16858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-RB | 557..1415 | 11..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:07:05 Download gff for
BS16858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-RB | 557..1415 | 11..872 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:07:05 Download gff for
BS16858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5762172..5762436 | 608..872 | 100 | | Plus |
| 3R | 5760135..5760371 | 11..250 | 98 | <- | Plus |
| 3R | 5760630..5760792 | 251..413 | 100 | <- | Plus |
| 3R | 5760849..5760961 | 414..526 | 100 | <- | Plus |
| 3R | 5761636..5761717 | 527..607 | 95 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:47:58 Download gff for
BS16858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1585857..1586093 | 11..250 | 98 | <- | Plus |
| arm_3R | 1586352..1586514 | 251..413 | 100 | <- | Plus |
| arm_3R | 1586571..1586683 | 414..526 | 100 | <- | Plus |
| arm_3R | 1587358..1587439 | 527..607 | 95 | <- | Plus |
| arm_3R | 1587894..1588158 | 608..872 | 100 | | Plus |
BS16858.5prime Sequence
914 bp (817 high quality bases) assembled on 2007-05-15
> BS16858.5prime
GAAGTTATCAGTCGACATGTCCATTGCCGATAAACGCGCCTCCTTCGCGC
GCCGCGCCGAATCCCTGGTGGAGCGGAAATACAATATCAGCACAGAGAAA
TGCGGGGATCTGACGGTCATAGTGCAGGGCGACCTGTCACAGCAGGAGAA
ACGCGCCGTGTTCATAACGGTTCACGACCTGGGCTGCAACCACAACTCAT
TCCAGGAGTTCGTGAGCAGTCCCTGCATGACGGAGATCAAGGAGCGCTCC
TGCTTCATCCACGTGGACGTGCCGGGGCACGCGGACAACGCGGAGGCCCT
GGCTGACGGCTTTCCGTTTCCCTCGCTCCAGTCCCTGGGCGAGGACCTGG
TCACCGTGCTGGACTACCTGCACGTAAAGTACGTGATCGGCCTAGGCGAG
GGTGCCGGAGCCAATGTCCTGGCCCGCTTCGGACTGGCCCATCCCAGCCG
GGTGCTGGGCCTCATCCTGATCAACGCGACTGGCAGCGCCGCCAGTGTAG
TGCAGTCCTTCAAGAACAAGTTCATTAGCTGGAAGAGCGACGAGGTGGCC
CAGTCGGCTGAGAGCTTTCTGATGTACCACAAATTCGGACATGTTATGGA
GCAAATCGTGGGCGAGAATCCGGACAAGGAGAAGATCGTGGCCGAGTACC
AGAAGCGTCTTCACCGATCCCTAAACAGCAAGAACATCGGTCTCTATGTC
AAAGCATTTATGAATCGCAAGGACCTTACGCTCAAGGGCTGCAAGGTAGA
TGTCATCCTGATCACGGGCATGCTCAGCCCCTATGCGTCCATGGTCGAGA
AGCTCCATCGCGACGTGGAGAAGGAGAGGGTCACCATTCTGAAGATCGAG
CGGGCTGGCGATGTCCTCGCCGATGCTCCCGGAAAGGTGGGCCATCCATT
CTGCTGTTCTGCAA
BS16858.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:22:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2082-PB | 1095 | CG2082-RB | 1..874 | 17..890 | 4370 | 100 | Plus |
| CG2082-PC | 1086 | CG2082-RC | 1..576 | 17..592 | 2880 | 100 | Plus |
| CG2082-PA | 1098 | CG2082-RA | 73..588 | 77..592 | 2580 | 100 | Plus |
| CG2082-PD | 606 | CG2082-RD | 73..588 | 77..592 | 2580 | 100 | Plus |
| CG2082-PC | 1086 | CG2082-RC | 577..865 | 602..890 | 1445 | 100 | Plus |
| CG2082-PA | 1098 | CG2082-RA | 589..877 | 602..890 | 1445 | 100 | Plus |
| CG2082-PE | 312 | CG2082-RE | 46..294 | 344..592 | 1245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:12:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2082-RK | 2290 | CG2082-RK | 327..1226 | 16..914 | 4460 | 99.8 | Plus |
| CG2082-RB | 2280 | CG2082-RB | 317..1216 | 16..914 | 4460 | 99.8 | Plus |
| CG2082-RL | 2277 | CG2082-RL | 317..1213 | 16..914 | 4350 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:11:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5762172..5762500 | 520..192 | 1645 | 100 | Minus |
| 3R | 32079331 | 3R | 5760630..5760792 | 877..715 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 5760849..5760963 | 714..600 | 575 | 100 | Minus |
| 3R | 32079331 | 3R | 5761644..5761719 | 594..519 | 380 | 100 | Minus |
| 3R | 32079331 | 3R | 5762557..5762622 | 191..126 | 330 | 100 | Minus |
| 3R | 32079331 | 3R | 5776952..5777012 | 76..16 | 305 | 100 | Minus |
| 3R | 32079331 | 3R | 5762704..5762756 | 128..76 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:12:05 has no hits.
BS16858.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:22:26 Download gff for
BS16858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-PB | 1..897 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:40:08 Download gff for
BS16858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-RB | 308..1214 | 9..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:38:03 Download gff for
BS16858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-RB | 308..1214 | 9..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:38:03 Download gff for
BS16858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5760336..5760371 | 878..912 | 94 | <- | Minus |
| 3R | 5760630..5760792 | 715..877 | 100 | <- | Minus |
| 3R | 5760849..5760961 | 602..714 | 100 | <- | Minus |
| 3R | 5761636..5761717 | 521..601 | 95 | <- | Minus |
| 3R | 5762172..5762500 | 192..520 | 100 | <- | Minus |
| 3R | 5762557..5762620 | 128..191 | 100 | <- | Minus |
| 3R | 5762705..5762755 | 77..127 | 100 | <- | Minus |
| 3R | 5776952..5777021 | 9..76 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:40:08 Download gff for
BS16858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1586058..1586093 | 878..912 | 94 | <- | Minus |
| arm_3R | 1586352..1586514 | 715..877 | 100 | <- | Minus |
| arm_3R | 1586571..1586683 | 602..714 | 100 | <- | Minus |
| arm_3R | 1587358..1587439 | 521..601 | 95 | <- | Minus |
| arm_3R | 1587894..1588222 | 192..520 | 100 | <- | Minus |
| arm_3R | 1588279..1588342 | 128..191 | 100 | <- | Minus |
| arm_3R | 1588427..1588477 | 77..127 | 100 | <- | Minus |
| arm_3R | 1602674..1602743 | 9..76 | 95 | | Minus |
BS16858.complete Sequence
1127 bp assembled on 2007-05-07
GenBank Submission: FJ638202
> BS16858.complete
GAAGTTATCAGTCGACATGTCCATTGCCGATAAACGCGCCTCCTTCGCGC
GCCGCGCCGAATCCCTGGTGGAGCGGAAATACAATATCAGCACAGAGAAA
TGCGGGGATCTGACGGTCATAGTGCAGGGCGACCTGTCACAGCAGGAGAA
ACGCGCCGTGTTCATAACGGTTCACGACCTGGGCTGCAACCACAACTCAT
TCCAGGAGTTCGTGAGCAGTCCCTGCATGACGGAGATCAAGGAGCGCTCC
TGCTTCATCCACGTGGACGTGCCGGGGCACGCGGACAACGCGGAGGCCCT
GGCTGACGGCTTTCCGTTTCCCTCGCTCCAGTCCCTGGGCGAGGACCTGG
TCACCGTGCTGGACTACCTGCACGTAAAGTACGTGATCGGCCTAGGCGAG
GGTGCCGGAGCCAATGTCCTGGCCCGCTTCGGACTGGCCCATCCCAGCCG
GGTGCTGGGCCTCATCCTGATCAACGCGACTGGCAGCGCCGCCAGTGTAG
TGCAGTCCTTCAAGAACAAGTTCATTAGCTGGAAGAGCGACGAGGTGGCC
CAGTCGGCTGAGAGCTTTCTGATGTACCACAAATTCGGACATGTTATGGA
GCAAATCGTGGGCGAGAATCCGGACAAGGAGAAGATCGTGGCCGAGTACC
AGAAGCGTCTTCACCGATCCCTAAACAGCAAGAACATCGGTCTCTATGTC
AAAGCATTTATGAATCGCAAGGACCTTACGCTCAAGGGCTGCAAGGTAGA
TGTCATCCTGATCACGGGCATGCTCAGCCCCTATGCGTCCATGGTCGAGA
AGCTCCATCGCGACGTGGAGAAGGAGAGGGTCACCATTCTGAAGATCGAG
CGGGCTGGCGATGTCCTCGCCGATGCTCCCGGAAAGGTGGCCCAATCCAT
TCTGCTGTTCTGCAAGGGACAGGGGCTGCTCACGTCGGTGGTGATGCCAG
GCGTGGATCGCGGACGCGCCTTCTCCACGGCTAGCTCCGGATCGCTGGAG
GGGGCCAACGGATCGCGGCGCCTGTCGCGCGGCATCTCGATGGAGGATTA
TGACAAGCCCAACATCCGCCGGCTCAGCATCATGAACAGTGAGTTGCCCA
AGAAGGAGTAAAAGCTTTCTAGACCAT
BS16858.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:09:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2082-RK | 1095 | CG2082-PK | 1..1095 | 17..1111 | 5475 | 100 | Plus |
| CG2082-RB | 1095 | CG2082-PB | 1..1095 | 17..1111 | 5475 | 100 | Plus |
| CG2082-RL | 1092 | CG2082-PL | 1..1092 | 17..1111 | 5335 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:09:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2082-RK | 2290 | CG2082-RK | 327..1423 | 16..1112 | 5485 | 100 | Plus |
| CG2082-RB | 2280 | CG2082-RB | 317..1413 | 16..1112 | 5485 | 100 | Plus |
| CG2082-RL | 2277 | CG2082-RL | 317..1410 | 16..1112 | 5345 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:09:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5762172..5762500 | 520..192 | 1645 | 100 | Minus |
| 3R | 32079331 | 3R | 5760137..5760371 | 1112..878 | 1175 | 100 | Minus |
| 3R | 32079331 | 3R | 5760630..5760792 | 877..715 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 5760849..5760963 | 714..600 | 575 | 100 | Minus |
| 3R | 32079331 | 3R | 5761644..5761719 | 594..519 | 380 | 100 | Minus |
| 3R | 32079331 | 3R | 5762557..5762622 | 191..126 | 330 | 100 | Minus |
| 3R | 32079331 | 3R | 5776952..5777012 | 76..16 | 305 | 100 | Minus |
| 3R | 32079331 | 3R | 5762704..5762756 | 128..76 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:09:24 has no hits.
BS16858.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:47 Download gff for
BS16858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-RB | 1..1095 | 17..1111 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:38:51 Download gff for
BS16858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-RB | 320..1412 | 17..1109 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:58 Download gff for
BS16858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-RB | 318..1410 | 17..1109 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:47 Download gff for
BS16858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-RB | 310..1417 | 9..1117 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:12:06 Download gff for
BS16858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-RB | 318..1410 | 17..1109 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:12:06 Download gff for
BS16858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5761636..5761717 | 521..601 | 95 | <- | Minus |
| 3R | 5776952..5777011 | 17..76 | 100 | | Minus |
| 3R | 5762172..5762500 | 192..520 | 100 | <- | Minus |
| 3R | 5762557..5762620 | 128..191 | 100 | <- | Minus |
| 3R | 5762705..5762755 | 77..127 | 100 | <- | Minus |
| 3R | 5760140..5760371 | 878..1109 | 100 | <- | Minus |
| 3R | 5760630..5760792 | 715..877 | 100 | <- | Minus |
| 3R | 5760849..5760961 | 602..714 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:58 Download gff for
BS16858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1585862..1586093 | 878..1109 | 100 | <- | Minus |
| arm_3R | 1586352..1586514 | 715..877 | 100 | <- | Minus |
| arm_3R | 1586571..1586683 | 602..714 | 100 | <- | Minus |
| arm_3R | 1587358..1587439 | 521..601 | 95 | <- | Minus |
| arm_3R | 1587894..1588222 | 192..520 | 100 | <- | Minus |
| arm_3R | 1588279..1588342 | 128..191 | 100 | <- | Minus |
| arm_3R | 1588427..1588477 | 77..127 | 100 | <- | Minus |
| arm_3R | 1602674..1602733 | 17..76 | 100 | | Minus |
BS16858.pep Sequence
Translation from 16 to 1110
> BS16858.pep
MSIADKRASFARRAESLVERKYNISTEKCGDLTVIVQGDLSQQEKRAVFI
TVHDLGCNHNSFQEFVSSPCMTEIKERSCFIHVDVPGHADNAEALADGFP
FPSLQSLGEDLVTVLDYLHVKYVIGLGEGAGANVLARFGLAHPSRVLGLI
LINATGSAASVVQSFKNKFISWKSDEVAQSAESFLMYHKFGHVMEQIVGE
NPDKEKIVAEYQKRLHRSLNSKNIGLYVKAFMNRKDLTLKGCKVDVILIT
GMLSPYASMVEKLHRDVEKERVTILKIERAGDVLADAPGKVAQSILLFCK
GQGLLTSVVMPGVDRGRAFSTASSGSLEGANGSRRLSRGISMEDYDKPNI
RRLSIMNSELPKKE*
BS16858.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2082-PK | 364 | CG2082-PK | 1..364 | 1..364 | 1845 | 100 | Plus |
| CG2082-PB | 364 | CG2082-PB | 1..364 | 1..364 | 1845 | 100 | Plus |
| CG2082-PJ | 361 | CG2082-PJ | 1..361 | 1..364 | 1817 | 99.2 | Plus |
| CG2082-PC | 361 | CG2082-PC | 1..361 | 1..364 | 1817 | 99.2 | Plus |
| CG2082-PL | 363 | CG2082-PL | 1..363 | 1..364 | 1815 | 99.2 | Plus |
