Clone BS16865 Report

Search the DGRC for BS16865

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:168
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG42708-RD
Protein status:BS16865.pep: full length peptide match
Sequenced Size:2183

Clone Sequence Records

BS16865.complete Sequence

2183 bp assembled on 2009-12-07

GenBank Submission: KX801848

> BS16865.complete
GAAGTTATCAGTCGACATGCTTAAAGGTGTTCCCACGCTAGCCGGTCGAA
ACCTTCGTCTCCTGACGACCCAGGCACAGGTGCTGGTCCATCAACGCGCC
AAAGCGTCCGCCGCCGAGCCCGTCGAGGACTTTGACCAGGAGACGGATCT
TTTGAAGCGCGCCAAGTTCGGACACACGGGCAAACAGCTGCAGCAGAAAA
TAATCAATGAGAAAAATCTGCGCGCTCCACCGCTTATGAACTTGGTGTTT
GCCAATCGGAAGTTGTCCTTCTACGATACCAGTTCCACTCCCAAGACCAA
AGAGGATAATGCCAAGCTCAGTCAGAGACGCCACTATTCGATGCGGCCCC
ATCGCGAGCAGGAGCAGCGAAATGCGGAGGATGTGCTATTCGACATGTTC
GCCAGCGAGGAGACGGGCCTCATCTCGATGGGCAAGTTCCTGGCCGGGCT
AAAGACCACCGGAATTCGCCGGAACGATCCGCGAGTGCGAGAACTGATGG
ACAACTTGAAGAAAGTGCACAAGCTAAATAACTACGAGACGGGTTCTTCG
GCGGAAACTCAGCATCTCAATCGAGAGACCTTCAAGGCTGTGGTTGCCCC
CAATATTGTGCTGATTGCCAAGGCCTTCCGGCAGCAGTTCGTTATTCCCG
ACTTTACGAGTTTCGTCAAGGACATCGAGGATATTTACAATCGCTGCAAG
ACCAACACTTTGGGCAAGTTGGCCGACTACATTCCGCAGCTGGCTCGCTA
TAATCCCGATTCCTGGGGCCTGAGCATCTGCACGATTGATGGCCAGCGCT
TCTCCATCGGCGATGTGGATGTGCCCTTCACACTCCAGAGTTGCAGTAAG
CCGCTGACCTACGCCATTGCCCTGGAGAAACTGGGTCCCAAGGTCGTGCA
CTCTTATGTGGGCCAGGAGCCGAGTGGCAGGAACTTCAACGAACTTGTTC
TGGATCAGAACAAAAAGCCACACAATCCGATGATCAACGCTGGTGCCATT
CTGACGTGCTCCCTGATGAACGCCCTTGTCAAGCCGGACATGACCTCCGC
TGAGATCTTCGACTACACCATGTCTTGGTTCAAACGGCTGTCGGGCGGAG
AGTATATCGGCTTTAATAATGCCGTATTCCTGTCCGAACGCGAGGCTGCC
GATCGGAACTATGCCCTGGGCTTCTACATGCGGGAGAACAAGTGCTTCCC
CAAGCGCACCAATCTCAAGGAGGTGATGGACTTTTACTTCCAGTGCTGCT
CCATGGAGACCAACTGCGAGGCAATGTCCGTAATCGCGGCCAGTTTGGCC
AATGGTGGCATCTGCCCCACCACCGAGGAGAAGGTGTTCCGGCCGGAGGT
AATCCGGGATGTGCTCTCGATTATGCACTCATGCGGTACATACGACTATT
CCGGACAGTTCGCCTTCAAGGTGGGTCTGCCAGCCAAGTCTGGAGTGAGT
GGCGGCATGATGCTGGTCATCCCCAACGTAATGGGCATCTTTGCCTGGTC
TCCGCCCTTGGATCACTTAGGCAATACAGTGAGAGGACTACAGTTTTGTG
AGGAGCTGGTCTCCATGTTCAATTTCCATCGCTACGACAACCTGAAGCAT
CTGTCCAACAAGAAGGATCCGCGGAAGCACCGCTACGAGACCAAGGGTCT
GTCCATCGTGAATCTACTCTTTTCAGCTGCCAGCGGCGATGTTACAGCCT
TGCGGCGTCATCGTCTCTCCGGAATGGATATCACTCTGGCCGACTACGAT
GGTCGCACTGCCCTCCATTTGGCTGCGTCCGAAGGACACTTGGAGTGCGT
CAAGTTCCTGCTGGAACAGTGTCATGTACCACACAACCCCAAGGATCGCT
GGGGAAATCTGCCCGTGGATGAGGCAGAGAACTTCGGCCACTGTCACGTG
GTGGAGTTCCTTCGCTCCTGGGCGGAGAAGGCCGACCAGTCCAGCGAGGA
GTGCAAGCCCGAGGCGGTGACCAGCAAGACACAAGCGGATGAGGAAATCT
GCAGCACAAGCGACCTGGAGACCAGTCCGACAACCAGTCCCATTCCCACT
CCCGTGGAATCCGGATCCAGGGCAGGATCAGGACGGTCCAGCCCGGTGCC
ATCGGATGCGGGCAGCACGGCGAGCGCCGGAAGCAGCATCGATGACAAAA
CCAAGCCGGGACTATAAAAGCTTTCTAGACCAT

BS16865.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG42708-RD 2151 CG42708-PD 1..2151 17..2167 10755 100 Plus
CG42708-RC 1977 CG42708-PC 22..1977 212..2167 9780 100 Plus
CG42708-RB 2214 CG42708-PB 366..2214 319..2167 9245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG42708-RD 2912 CG42708-RD 192..2342 17..2167 10755 100 Plus
CG42708-RC 2741 CG42708-RC 93..2048 212..2167 9780 100 Plus
CG42708-RB 2970 CG42708-RB 429..2277 319..2167 9245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12671556..12672587 1994..963 5160 100 Minus
2R 25286936 2R 12672664..12673037 962..589 1870 100 Minus
2R 25286936 2R 12673100..12673339 588..349 1200 100 Minus
2R 25286936 2R 12679208..12679402 211..17 975 100 Minus
2R 25286936 2R 12671176..12671351 2167..1992 880 100 Minus
2R 25286936 2R 12676125..12676233 318..210 545 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:41:13 has no hits.

BS16865.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:16 Download gff for BS16865.complete
Subject Subject Range Query Range Percent Splice Strand
nemy-RD 1..2151 17..2167 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:30 Download gff for BS16865.complete
Subject Subject Range Query Range Percent Splice Strand
nemy-RD 188..2336 17..2165 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:54:44 Download gff for BS16865.complete
Subject Subject Range Query Range Percent Splice Strand
CG42708-RD 192..2340 17..2165 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:30 Download gff for BS16865.complete
Subject Subject Range Query Range Percent Splice Strand
nemy-RD 188..2336 17..2165 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:30 Download gff for BS16865.complete
Subject Subject Range Query Range Percent Splice Strand
CG42708-RD 192..2340 17..2165 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:30 Download gff for BS16865.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12671178..12671349 1994..2165 100 <- Minus
2R 12676125..12676231 212..318 100 <- Minus
2R 12679208..12679402 17..211 100   Minus
2R 12671557..12672587 963..1993 100 <- Minus
2R 12672664..12673037 589..962 100 <- Minus
2R 12673100..12673339 349..588 100 <- Minus
2R 12673899..12673928 319..348 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:54:44 Download gff for BS16865.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8558683..8558854 1994..2165 100 <- Minus
arm_2R 8559062..8560092 963..1993 100 <- Minus
arm_2R 8560169..8560542 589..962 100 <- Minus
arm_2R 8560605..8560844 349..588 100 <- Minus
arm_2R 8561404..8561433 319..348 100 <- Minus
arm_2R 8563630..8563736 212..318 100 <- Minus
arm_2R 8566713..8566907 17..211 100   Minus

BS16865.3prime Sequence

889 bp (754 high quality bases) assembled on 2007-05-15

> BS16865.3prime
ATGGTCTAGAAAGCTTTTATAGTCCCGGCTTGGTTTTGTCATCGATGCTG
CTTCCGGCGCTCGCCGTGCTGCCCGCATCCGATGGCACCGGGCTGGACCG
TCCTGATCCTGCCCTGGATCCGGATTCCACGGGAGTGGGAATGGGACTGG
TTGTCGGACTGGTCTCCAGGTCGCTTGTGCTGCAGATTTCCTCATCCGCT
TGTGTCTTGCTGGTCACCGCCTCGGGCTTGCACTCCTCGCTGGACTGGTC
GGCCTTCTCCGCCCAGGAGCGAAGGAACTCCACCACGTGACAGTGGCCGA
AGTTCTCTGCCTCATCCACGGGCAGATTTCCCCAGCGATCCTTGGGGTTG
TGTGGTACATGACACTGTTCCAGCAGGAACTTGACGCACTCCAAGTGTCC
TTCGGACGCAGCCAAATGGAGGGCAGTGCGACCATCGTAGTCGGCCAGAG
TGATATCCATTCCGGAGAGACGATGACGCCGCAAGGCTGTAACATCGCCG
CTGGCAGCTGAAAAGAGTAGATTCACGATGGACAGACCCTTGGTCTCGTA
GCGGTGCTTCCGCGGATCCTTCTTGTTGGACAGATGCTTCAGGTTGTCGT
AGCGATGGAAATTGAACATGGAGACCAGCTCCTCACAAAACTGTAGTCCT
CTCACTGTATTGCCTAAGTGATCCAAGGGCGGAGACCAGGCAAAGATGCC
CATTACGTTGGGGATGACCAGCATCATGCCGCCACTCACTCCAGACTTGG
CTGGCAGACCCACCTTGAAGGCGAACTGTCCGGAATAGTCGTATGTACCG
CATGAGTGCATAATCGAGAGCACATCCCGGATTACCCTCCGCCNGAACAC
CTTCTCCTCGGTGGTGGGGCAGATGCCACCATGGCCAAA

BS16865.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:28:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8772-PF 2016 nemy-RF 1197..2016 836..17 4100 100 Minus
CG8772-PD 2151 nemy-RD 1332..2151 836..17 4100 100 Minus
CG8772-PA 2121 nemy-RA 1302..2121 836..17 4100 100 Minus
CG8772-PE 1947 nemy-RE 1128..1947 836..17 4100 100 Minus
CG8772-PC 1977 nemy-RC 1158..1977 836..17 4100 100 Minus
CG8772-PB 2214 nemy-RB 1395..2214 836..17 4100 100 Minus
CG8772-PF 2016 nemy-RF 1151..1192 882..841 191 97.6 Minus
CG8772-PD 2151 nemy-RD 1286..1327 882..841 191 97.6 Minus
CG8772-PA 2121 nemy-RA 1256..1297 882..841 191 97.6 Minus
CG8772-PE 1947 nemy-RE 1082..1123 882..841 191 97.6 Minus
CG8772-PC 1977 nemy-RC 1112..1153 882..841 191 97.6 Minus
CG8772-PB 2214 nemy-RB 1349..1390 882..841 191 97.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG42708-RB 2970 CG42708-RB 1404..2277 889..17 4289 99.5 Minus
CG42708-RC 2741 CG42708-RC 1175..2048 889..17 4289 99.5 Minus
CG42708-RE 2711 CG42708-RE 1145..2018 889..17 4289 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12671556..12672248 190..882 3409 99.4 Plus
2R 25286936 2R 12671176..12671351 17..192 880 100 Plus
Blast to na_te.dros performed on 2015-02-11 03:49:10 has no hits.

BS16865.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:28:56 Download gff for BS16865.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8772-PC 1107..1977 17..886 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:27:05 Download gff for BS16865.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42708-RE 1148..2020 13..886 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:30:57 Download gff for BS16865.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42708-RE 1148..2020 13..886 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:30:57 Download gff for BS16865.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12671174..12671349 13..190 98 <- Plus
2R 12671557..12672253 191..886 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:27:05 Download gff for BS16865.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8558679..8558854 13..190 98 <- Plus
arm_2R 8559062..8559758 191..886 99   Plus

BS16865.5prime Sequence

821 bp (820 high quality bases) assembled on 2007-05-15

> BS16865.5prime
GAAGTTATCAGTCGACATGCTTAAAGGTGTTCCCACGCTAGCCGGTCGAA
ACCTTCGTCTCCTGACGACCCAGGCACAGGTGCTGGTCCATCAACGCGCC
AAAGCGTCCGCCGCCGAGCCCGTCGAGGACTTTGACCAGGAGACGGATCT
TTTGAAGCGCGCCAAGTTCGGACACACGGGCAAACAGCTGCAGCAGAAAA
TAATCAATGAGAAAAATCTGCGCGCTCCACCGCTTATGAACTTGGTGTTT
GCCAATCGGAAGTTGTCCTTCTACGATACCAGTTCCACTCCCAAGACCAA
AGAGGATAATGCCAAGCTCAGTCAGAGACGCCACTATTCGATGCGGCCCC
ATCGCGAGCAGGAGCAGCGAAATGCGGAGGATGTGCTATTCGACATGTTC
GCCAGCGAGGAGACGGGCCTCATCTCGATGGGCAAGTTCCTGGCCGGGCT
AAAGACCACCGGAATTCGCCGGAACGATCCGCGAGTGCGAGAACTGATGG
ACAACTTGAAGAAAGTGCACAAGCTAAATAACTACGAGACGGGTTCTTCG
GCGGAAACTCAGCATCTCAATCGAGAGACCTTCAAGGCTGTGGTTGCCCC
CAATATTGTGCTGATTGCCAAGGCCTTCCGGCAGCAGTTCGTTATTCCCG
ACTTTACGAGTTTCGTCAAGGACATCGAGGATATTTACAATCGCTGCAAG
ACCAACACTTTGGGCAAGTTGGCCGACTACATTCCGCAGCTGGCTCGCTA
TAATCCCGATTCCTGNGGCCTGAGCATCTGCACGATTGATGGCCAGCGCT
TCTCCATCGGCGATGTGGATG

BS16865.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:22:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8772-PD 2151 nemy-RD 1..805 17..821 4006 99.8 Plus
CG8772-PC 1977 nemy-RC 22..631 212..821 3031 99.8 Plus
CG8772-PB 2214 nemy-RB 366..868 319..821 2496 99.8 Plus
CG8772-PA 2121 nemy-RA 303..775 349..821 2346 99.7 Plus
CG8772-PE 1947 nemy-RE 129..601 349..821 2346 99.7 Plus
CG8772-PF 2016 nemy-RF 198..670 349..821 2346 99.7 Plus
CG8772-PA 2121 nemy-RA 1..303 17..319 1515 100 Plus
CG8772-PE 1947 nemy-RE 22..129 212..319 540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:26:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG42708-RD 2912 CG42708-RD 192..996 17..821 4014 99.9 Plus
CG42708-RC 2741 CG42708-RC 93..702 212..821 3039 99.8 Plus
CG42708-RB 2970 CG42708-RB 429..931 319..821 2504 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12673100..12673339 588..349 1200 100 Minus
2R 25286936 2R 12672805..12673037 821..589 1154 99.6 Minus
2R 25286936 2R 12679208..12679402 211..17 975 100 Minus
2R 25286936 2R 12676125..12676233 318..210 545 100 Minus
Blast to na_te.dros performed on 2015-02-11 02:26:02 has no hits.

BS16865.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:22:59 Download gff for BS16865.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8772-PD 1..805 17..821 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:00:07 Download gff for BS16865.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42708-RD 186..996 11..821 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:18:07 Download gff for BS16865.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42708-RD 186..996 11..821 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:18:07 Download gff for BS16865.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12672805..12673037 589..821 99 <- Minus
2R 12673100..12673339 349..588 100 <- Minus
2R 12673899..12673928 319..348 100 <- Minus
2R 12676125..12676231 212..318 100 <- Minus
2R 12679208..12679408 11..211 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:00:07 Download gff for BS16865.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8560310..8560542 589..821 99 <- Minus
arm_2R 8560605..8560844 349..588 100 <- Minus
arm_2R 8561404..8561433 319..348 100 <- Minus
arm_2R 8563630..8563736 212..318 100 <- Minus
arm_2R 8566713..8566913 11..211 98   Minus

BS16865.pep Sequence

Translation from 16 to 2166

> BS16865.pep
MLKGVPTLAGRNLRLLTTQAQVLVHQRAKASAAEPVEDFDQETDLLKRAK
FGHTGKQLQQKIINEKNLRAPPLMNLVFANRKLSFYDTSSTPKTKEDNAK
LSQRRHYSMRPHREQEQRNAEDVLFDMFASEETGLISMGKFLAGLKTTGI
RRNDPRVRELMDNLKKVHKLNNYETGSSAETQHLNRETFKAVVAPNIVLI
AKAFRQQFVIPDFTSFVKDIEDIYNRCKTNTLGKLADYIPQLARYNPDSW
GLSICTIDGQRFSIGDVDVPFTLQSCSKPLTYAIALEKLGPKVVHSYVGQ
EPSGRNFNELVLDQNKKPHNPMINAGAILTCSLMNALVKPDMTSAEIFDY
TMSWFKRLSGGEYIGFNNAVFLSEREAADRNYALGFYMRENKCFPKRTNL
KEVMDFYFQCCSMETNCEAMSVIAASLANGGICPTTEEKVFRPEVIRDVL
SIMHSCGTYDYSGQFAFKVGLPAKSGVSGGMMLVIPNVMGIFAWSPPLDH
LGNTVRGLQFCEELVSMFNFHRYDNLKHLSNKKDPRKHRYETKGLSIVNL
LFSAASGDVTALRRHRLSGMDITLADYDGRTALHLAASEGHLECVKFLLE
QCHVPHNPKDRWGNLPVDEAENFGHCHVVEFLRSWAEKADQSSEECKPEA
VTSKTQADEEICSTSDLETSPTTSPIPTPVESGSRAGSGRSSPVPSDAGS
TASAGSSIDDKTKPGL*

BS16865.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG42708-PD 716 CG8772-PD 1..716 1..716 3754 100 Plus
CG42708-PA 706 CG8772-PA 1..706 1..716 3678 98.6 Plus
CG42708-PH 775 CG8772-PH 1..696 1..710 3433 93.8 Plus
CG42708-PC 658 CG8772-PC 8..658 66..716 3431 100 Plus
CG42708-PE 648 CG8772-PE 8..648 66..716 3355 98.5 Plus
CG42708-PH 775 CG8772-PH 718..775 659..716 290 98.3 Plus