Clone Sequence Records
BS16866.3prime Sequence
720 bp (720 high quality bases) assembled on 2007-05-15
> BS16866.3prime
ATGGTCTAGAAAGCTTTTACACGCAATAAACCGCTTTGATCACCGATCCC
TGCTTGCACATAGTGTCCTTGTGCAGCTGGTACTGCAGTTGGTGGGGCGG
AAGGACGAGCAGGTCGCGTAACTTGAGTCCAATCTCCATGACGGCCAGCT
CGTTGTGCCCGTTGGCGGTCCAAATCGAAATTTTGTTGCTCTTCCCGCGC
AAGTTGATAACGGCGCCGCAGACTTCCTCGGTGTTTTCAAAGGCCTCGCC
AATCAGTATGAGTAGCACATCTAACCAAAGCTTGTCGAGCTCCGCTTTGG
AGCCACGCCCCATATTGATGACCCAACGGCCGCCGAACTTGTTCGCATCA
TCCTCCCACATTGGCTGAATGCCCTTCTTGAACAAAGAATAATCGCTGCC
CACTCTAATCTCAGATGGCTGCTTAATGTGATTGTAGAGACTCCAGAAGT
CCTCGACCATGTCAAAGCTAGTAATCTCGTTCTGCATGTCCTCCCAGTTC
TTGCTGCGATCATTCTCCAAGTACCACAGTGTCCAAGTGTTCTCTAGCGG
ATGCTTAAGGCGCAAATCAACAATCTCCGTTACGGGCTTGCGAATATCCA
TATCCGAAAGCGTTTTCAGATCCTCGCTGGAACTCGAAGGAGAATCGGCC
AGCGTCTCGGTGCCGTTGTCCATCATCTTGAATTCGGTCTGCTGGGTCGT
CAGCATGTCGACTGATAACT
BS16866.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:29:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10124-PA | 690 | CG10124-RA | 1..690 | 706..17 | 3425 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:13:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF4E-4-RA | 1031 | CG10124-RA | 134..824 | 707..17 | 3440 | 99.9 | Minus |
eIF-4E-RI | 1793 | CG4035-RI | 1020..1510 | 535..48 | 500 | 74.1 | Minus |
eIF-4E-RH | 1492 | CG4035-RH | 719..1209 | 535..48 | 500 | 74.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:13:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6665166..6665508 | 365..707 | 1715 | 100 | Plus |
3L | 28110227 | 3L | 6664431..6664591 | 17..177 | 790 | 99.4 | Plus |
3L | 28110227 | 3L | 6665015..6665114 | 266..365 | 500 | 100 | Plus |
3L | 28110227 | 3L | 6664847..6664935 | 178..266 | 445 | 100 | Plus |
3L | 28110227 | 3L | 9400584..9400752 | 367..535 | 290 | 78.1 | Plus |
X | 23542271 | X | 1159150..1159337 | 348..535 | 235 | 75 | Plus |
Blast to na_te.dros performed on 2015-02-04 21:13:33 has no hits.
BS16866.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:29:04 Download gff for
BS16866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10124-PA | 1..690 | 17..706 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:30:39 Download gff for
BS16866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-4-RA | 124..831 | 8..717 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:56:05 Download gff for
BS16866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-4-RA | 124..831 | 8..717 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:56:05 Download gff for
BS16866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6664424..6664591 | 8..177 | 97 | <- | Plus |
3L | 6664847..6664934 | 178..265 | 100 | <- | Plus |
3L | 6665015..6665114 | 266..365 | 100 | <- | Plus |
3L | 6665167..6665518 | 366..717 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:30:39 Download gff for
BS16866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6657524..6657691 | 8..177 | 97 | <- | Plus |
arm_3L | 6657947..6658034 | 178..265 | 100 | <- | Plus |
arm_3L | 6658115..6658214 | 266..365 | 100 | <- | Plus |
arm_3L | 6658267..6658618 | 366..717 | 98 | | Plus |
BS16866.5prime Sequence
720 bp (720 high quality bases) assembled on 2007-05-15
> BS16866.5prime
GAAGTTATCAGTCGACATGCTGACGACCCAGCAGACCGAATTCAAGATGA
TGGACAACGGCACCGAGACGCTGGCCGATTCTCCTTCGAGTTCCAGCGAG
GATCTGAAAACGCTTTCGGATATGGATATTCGCAAGCCCGTAACGGAGAT
TGTTGATTTGCGCCTTAAGCATCCGCTAGAGAACACTTGGACACTGTGGT
ACTTGGAGAATGATCGCAGCAAGAACTGGGAGGACATGCAGAACGAGATT
ACTAGCTTTGACATGGTCGAGGACTTCTGGAGTCTCTACAATCACATTAA
GCAGCCATCTGAGATTAGAGTGGGCAGCGATTATTCTTTGTTCAAGAAGG
GCATTCAGCCAATGTGGGAGGATGATGCGAACAAGTTCGGCGGCCGTTGG
GTCATCAATATGGGGCGTGGCTCCAAAGCGGAGCTCGACAAGCTTTGGTT
AGATGTGCTACTCATACTGATTGGCGAGGCCTTTGAAAACACCGAGGAAG
TCTGCGGCGCCGTTATCAACTTGCGCGGGAAGAGCAACAAAATTTCGATT
TGGACCGCCAACGGGCACAACGAGCTGGCCGTCATGGAGATTGGACTCAA
GTTACGCGACCTGCTCGTCCTTCCGCCCCACCAACTGCAGTACCAGCTGC
ACAAGGACACTATGTGCAAGCAGGGATCGGTGATCAAAGCGGTTTATTGC
GTGTAAAAGCTTTCTAGACC
BS16866.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:23:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10124-PA | 690 | CG10124-RA | 1..690 | 17..706 | 3425 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:31:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF4E-4-RA | 1031 | CG10124-RA | 134..824 | 16..706 | 3440 | 99.9 | Plus |
eIF-4E-RI | 1793 | CG4035-RI | 1020..1510 | 188..675 | 500 | 74.1 | Plus |
eIF-4E-RH | 1492 | CG4035-RH | 719..1209 | 188..675 | 500 | 74.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:31:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6665166..6665508 | 358..16 | 1715 | 100 | Minus |
3L | 28110227 | 3L | 6664431..6664591 | 706..546 | 790 | 99.4 | Minus |
3L | 28110227 | 3L | 6665015..6665114 | 457..358 | 500 | 100 | Minus |
3L | 28110227 | 3L | 6664847..6664935 | 545..457 | 445 | 100 | Minus |
3L | 28110227 | 3L | 9400584..9400752 | 356..188 | 290 | 78.1 | Minus |
X | 23542271 | X | 1159150..1159337 | 375..188 | 235 | 75 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:31:25 has no hits.
BS16866.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:23:03 Download gff for
BS16866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10124-PA | 1..690 | 17..706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:47:25 Download gff for
BS16866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-4-RA | 124..831 | 6..715 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:36:11 Download gff for
BS16866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-4-RA | 124..831 | 6..715 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:36:11 Download gff for
BS16866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6664424..6664591 | 546..715 | 97 | <- | Minus |
3L | 6664847..6664934 | 458..545 | 100 | <- | Minus |
3L | 6665015..6665114 | 358..457 | 100 | <- | Minus |
3L | 6665167..6665518 | 6..357 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:47:25 Download gff for
BS16866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6657524..6657691 | 546..715 | 97 | <- | Minus |
arm_3L | 6657947..6658034 | 458..545 | 100 | <- | Minus |
arm_3L | 6658115..6658214 | 358..457 | 100 | <- | Minus |
arm_3L | 6658267..6658618 | 6..357 | 98 | | Minus |
BS16866.complete Sequence
722 bp assembled on 2007-05-07
GenBank Submission: FJ638203
> BS16866.complete
GAAGTTATCAGTCGACATGCTGACGACCCAGCAGACCGAATTCAAGATGA
TGGACAACGGCACCGAGACGCTGGCCGATTCTCCTTCGAGTTCCAGCGAG
GATCTGAAAACGCTTTCGGATATGGATATTCGCAAGCCCGTAACGGAGAT
TGTTGATTTGCGCCTTAAGCATCCGCTAGAGAACACTTGGACACTGTGGT
ACTTGGAGAATGATCGCAGCAAGAACTGGGAGGACATGCAGAACGAGATT
ACTAGCTTTGACATGGTCGAGGACTTCTGGAGTCTCTACAATCACATTAA
GCAGCCATCTGAGATTAGAGTGGGCAGCGATTATTCTTTGTTCAAGAAGG
GCATTCAGCCAATGTGGGAGGATGATGCGAACAAGTTCGGCGGCCGTTGG
GTCATCAATATGGGGCGTGGCTCCAAAGCGGAGCTCGACAAGCTTTGGTT
AGATGTGCTACTCATACTGATTGGCGAGGCCTTTGAAAACACCGAGGAAG
TCTGCGGCGCCGTTATCAACTTGCGCGGGAAGAGCAACAAAATTTCGATT
TGGACCGCCAACGGGCACAACGAGCTGGCCGTCATGGAGATTGGACTCAA
GTTACGCGACCTGCTCGTCCTTCCGCCCCACCAACTGCAGTACCAGCTGC
ACAAGGACACTATGTGCAAGCAGGGATCGGTGATCAAAGCGGTTTATTGC
GTGTAAAAGCTTTCTAGACCAT
BS16866.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:02:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF4E-4-RA | 690 | CG10124-PA | 1..690 | 17..706 | 3435 | 99.9 | Plus |
eIF-4E-RI | 780 | CG4035-PI | 259..680 | 188..609 | 490 | 74.4 | Plus |
eIF-4E-RH | 780 | CG4035-PH | 259..680 | 188..609 | 490 | 74.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF4E-4-RA | 1031 | CG10124-RA | 134..824 | 16..706 | 3440 | 99.9 | Plus |
eIF-4E-RI | 1793 | CG4035-RI | 1020..1441 | 188..609 | 490 | 74.4 | Plus |
eIF-4E-RH | 1492 | CG4035-RH | 719..1140 | 188..609 | 490 | 74.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6665166..6665508 | 358..16 | 1715 | 100 | Minus |
3L | 28110227 | 3L | 6664431..6664591 | 706..546 | 790 | 99.4 | Minus |
3L | 28110227 | 3L | 6665015..6665114 | 457..358 | 500 | 100 | Minus |
3L | 28110227 | 3L | 6664847..6664935 | 545..457 | 445 | 100 | Minus |
3L | 28110227 | 3L | 9400584..9400752 | 356..188 | 290 | 78.1 | Minus |
X | 23542271 | X | 1159150..1159337 | 375..188 | 235 | 75 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:02:43 has no hits.
BS16866.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:34 Download gff for
BS16866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-4-RA | 1..690 | 17..706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:35 Download gff for
BS16866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-4-RA | 124..831 | 6..715 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:43:06 Download gff for
BS16866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-4-RA | 135..822 | 17..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:34 Download gff for
BS16866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-4-RA | 124..831 | 6..715 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:17:03 Download gff for
BS16866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-4-RA | 135..822 | 17..704 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:17:03 Download gff for
BS16866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6664433..6664591 | 546..704 | 99 | <- | Minus |
3L | 6664847..6664934 | 458..545 | 100 | <- | Minus |
3L | 6665015..6665114 | 358..457 | 100 | <- | Minus |
3L | 6665167..6665507 | 17..357 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:43:06 Download gff for
BS16866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6658267..6658607 | 17..357 | 100 | | Minus |
arm_3L | 6657947..6658034 | 458..545 | 100 | <- | Minus |
arm_3L | 6658115..6658214 | 358..457 | 100 | <- | Minus |
arm_3L | 6657533..6657691 | 546..704 | 99 | <- | Minus |
BS16866.pep Sequence
Translation from 16 to 705
> BS16866.pep
MLTTQQTEFKMMDNGTETLADSPSSSSEDLKTLSDMDIRKPVTEIVDLRL
KHPLENTWTLWYLENDRSKNWEDMQNEITSFDMVEDFWSLYNHIKQPSEI
RVGSDYSLFKKGIQPMWEDDANKFGGRWVINMGRGSKAELDKLWLDVLLI
LIGEAFENTEEVCGAVINLRGKSNKISIWTANGHNELAVMEIGLKLRDLL
VLPPHQLQYQLHKDTMCKQGSVIKAVYCV*
BS16866.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF4E-4-PA | 229 | CG10124-PA | 1..229 | 1..229 | 1216 | 100 | Plus |
eIF-4E-PC | 248 | CG4035-PC | 69..246 | 51..227 | 724 | 74.7 | Plus |
eIF-4E-PI | 259 | CG4035-PI | 80..257 | 51..227 | 724 | 74.7 | Plus |
eIF-4E-PH | 259 | CG4035-PH | 80..257 | 51..227 | 724 | 74.7 | Plus |
eIF-4E-PD | 259 | CG4035-PD | 80..257 | 51..227 | 724 | 74.7 | Plus |