Clone BS16866 Report

Search the DGRC for BS16866

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:168
Well:66
Vector:pDNR-Dual
Associated Gene/TranscripteIF4E-4-RA
Protein status:BS16866.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16866.3prime Sequence

720 bp (720 high quality bases) assembled on 2007-05-15

> BS16866.3prime
ATGGTCTAGAAAGCTTTTACACGCAATAAACCGCTTTGATCACCGATCCC
TGCTTGCACATAGTGTCCTTGTGCAGCTGGTACTGCAGTTGGTGGGGCGG
AAGGACGAGCAGGTCGCGTAACTTGAGTCCAATCTCCATGACGGCCAGCT
CGTTGTGCCCGTTGGCGGTCCAAATCGAAATTTTGTTGCTCTTCCCGCGC
AAGTTGATAACGGCGCCGCAGACTTCCTCGGTGTTTTCAAAGGCCTCGCC
AATCAGTATGAGTAGCACATCTAACCAAAGCTTGTCGAGCTCCGCTTTGG
AGCCACGCCCCATATTGATGACCCAACGGCCGCCGAACTTGTTCGCATCA
TCCTCCCACATTGGCTGAATGCCCTTCTTGAACAAAGAATAATCGCTGCC
CACTCTAATCTCAGATGGCTGCTTAATGTGATTGTAGAGACTCCAGAAGT
CCTCGACCATGTCAAAGCTAGTAATCTCGTTCTGCATGTCCTCCCAGTTC
TTGCTGCGATCATTCTCCAAGTACCACAGTGTCCAAGTGTTCTCTAGCGG
ATGCTTAAGGCGCAAATCAACAATCTCCGTTACGGGCTTGCGAATATCCA
TATCCGAAAGCGTTTTCAGATCCTCGCTGGAACTCGAAGGAGAATCGGCC
AGCGTCTCGGTGCCGTTGTCCATCATCTTGAATTCGGTCTGCTGGGTCGT
CAGCATGTCGACTGATAACT

BS16866.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG10124-PA 690 CG10124-RA 1..690 706..17 3425 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:13:35
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-4-RA 1031 CG10124-RA 134..824 707..17 3440 99.9 Minus
eIF-4E-RI 1793 CG4035-RI 1020..1510 535..48 500 74.1 Minus
eIF-4E-RH 1492 CG4035-RH 719..1209 535..48 500 74.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6665166..6665508 365..707 1715 100 Plus
3L 28110227 3L 6664431..6664591 17..177 790 99.4 Plus
3L 28110227 3L 6665015..6665114 266..365 500 100 Plus
3L 28110227 3L 6664847..6664935 178..266 445 100 Plus
3L 28110227 3L 9400584..9400752 367..535 290 78.1 Plus
X 23542271 X 1159150..1159337 348..535 235 75 Plus
Blast to na_te.dros performed on 2015-02-04 21:13:33 has no hits.

BS16866.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:29:04 Download gff for BS16866.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10124-PA 1..690 17..706 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:30:39 Download gff for BS16866.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF4E-4-RA 124..831 8..717 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:56:05 Download gff for BS16866.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF4E-4-RA 124..831 8..717 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:56:05 Download gff for BS16866.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6664424..6664591 8..177 97 <- Plus
3L 6664847..6664934 178..265 100 <- Plus
3L 6665015..6665114 266..365 100 <- Plus
3L 6665167..6665518 366..717 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:30:39 Download gff for BS16866.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6657524..6657691 8..177 97 <- Plus
arm_3L 6657947..6658034 178..265 100 <- Plus
arm_3L 6658115..6658214 266..365 100 <- Plus
arm_3L 6658267..6658618 366..717 98   Plus

BS16866.5prime Sequence

720 bp (720 high quality bases) assembled on 2007-05-15

> BS16866.5prime
GAAGTTATCAGTCGACATGCTGACGACCCAGCAGACCGAATTCAAGATGA
TGGACAACGGCACCGAGACGCTGGCCGATTCTCCTTCGAGTTCCAGCGAG
GATCTGAAAACGCTTTCGGATATGGATATTCGCAAGCCCGTAACGGAGAT
TGTTGATTTGCGCCTTAAGCATCCGCTAGAGAACACTTGGACACTGTGGT
ACTTGGAGAATGATCGCAGCAAGAACTGGGAGGACATGCAGAACGAGATT
ACTAGCTTTGACATGGTCGAGGACTTCTGGAGTCTCTACAATCACATTAA
GCAGCCATCTGAGATTAGAGTGGGCAGCGATTATTCTTTGTTCAAGAAGG
GCATTCAGCCAATGTGGGAGGATGATGCGAACAAGTTCGGCGGCCGTTGG
GTCATCAATATGGGGCGTGGCTCCAAAGCGGAGCTCGACAAGCTTTGGTT
AGATGTGCTACTCATACTGATTGGCGAGGCCTTTGAAAACACCGAGGAAG
TCTGCGGCGCCGTTATCAACTTGCGCGGGAAGAGCAACAAAATTTCGATT
TGGACCGCCAACGGGCACAACGAGCTGGCCGTCATGGAGATTGGACTCAA
GTTACGCGACCTGCTCGTCCTTCCGCCCCACCAACTGCAGTACCAGCTGC
ACAAGGACACTATGTGCAAGCAGGGATCGGTGATCAAAGCGGTTTATTGC
GTGTAAAAGCTTTCTAGACC

BS16866.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG10124-PA 690 CG10124-RA 1..690 17..706 3425 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-4-RA 1031 CG10124-RA 134..824 16..706 3440 99.9 Plus
eIF-4E-RI 1793 CG4035-RI 1020..1510 188..675 500 74.1 Plus
eIF-4E-RH 1492 CG4035-RH 719..1209 188..675 500 74.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6665166..6665508 358..16 1715 100 Minus
3L 28110227 3L 6664431..6664591 706..546 790 99.4 Minus
3L 28110227 3L 6665015..6665114 457..358 500 100 Minus
3L 28110227 3L 6664847..6664935 545..457 445 100 Minus
3L 28110227 3L 9400584..9400752 356..188 290 78.1 Minus
X 23542271 X 1159150..1159337 375..188 235 75 Minus
Blast to na_te.dros performed on 2015-02-13 02:31:25 has no hits.

BS16866.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:23:03 Download gff for BS16866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10124-PA 1..690 17..706 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:47:25 Download gff for BS16866.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF4E-4-RA 124..831 6..715 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:36:11 Download gff for BS16866.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF4E-4-RA 124..831 6..715 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:36:11 Download gff for BS16866.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6664424..6664591 546..715 97 <- Minus
3L 6664847..6664934 458..545 100 <- Minus
3L 6665015..6665114 358..457 100 <- Minus
3L 6665167..6665518 6..357 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:47:25 Download gff for BS16866.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6657524..6657691 546..715 97 <- Minus
arm_3L 6657947..6658034 458..545 100 <- Minus
arm_3L 6658115..6658214 358..457 100 <- Minus
arm_3L 6658267..6658618 6..357 98   Minus

BS16866.complete Sequence

722 bp assembled on 2007-05-07

GenBank Submission: FJ638203

> BS16866.complete
GAAGTTATCAGTCGACATGCTGACGACCCAGCAGACCGAATTCAAGATGA
TGGACAACGGCACCGAGACGCTGGCCGATTCTCCTTCGAGTTCCAGCGAG
GATCTGAAAACGCTTTCGGATATGGATATTCGCAAGCCCGTAACGGAGAT
TGTTGATTTGCGCCTTAAGCATCCGCTAGAGAACACTTGGACACTGTGGT
ACTTGGAGAATGATCGCAGCAAGAACTGGGAGGACATGCAGAACGAGATT
ACTAGCTTTGACATGGTCGAGGACTTCTGGAGTCTCTACAATCACATTAA
GCAGCCATCTGAGATTAGAGTGGGCAGCGATTATTCTTTGTTCAAGAAGG
GCATTCAGCCAATGTGGGAGGATGATGCGAACAAGTTCGGCGGCCGTTGG
GTCATCAATATGGGGCGTGGCTCCAAAGCGGAGCTCGACAAGCTTTGGTT
AGATGTGCTACTCATACTGATTGGCGAGGCCTTTGAAAACACCGAGGAAG
TCTGCGGCGCCGTTATCAACTTGCGCGGGAAGAGCAACAAAATTTCGATT
TGGACCGCCAACGGGCACAACGAGCTGGCCGTCATGGAGATTGGACTCAA
GTTACGCGACCTGCTCGTCCTTCCGCCCCACCAACTGCAGTACCAGCTGC
ACAAGGACACTATGTGCAAGCAGGGATCGGTGATCAAAGCGGTTTATTGC
GTGTAAAAGCTTTCTAGACCAT

BS16866.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:02:44
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-4-RA 690 CG10124-PA 1..690 17..706 3435 99.9 Plus
eIF-4E-RI 780 CG4035-PI 259..680 188..609 490 74.4 Plus
eIF-4E-RH 780 CG4035-PH 259..680 188..609 490 74.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-4-RA 1031 CG10124-RA 134..824 16..706 3440 99.9 Plus
eIF-4E-RI 1793 CG4035-RI 1020..1441 188..609 490 74.4 Plus
eIF-4E-RH 1492 CG4035-RH 719..1140 188..609 490 74.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6665166..6665508 358..16 1715 100 Minus
3L 28110227 3L 6664431..6664591 706..546 790 99.4 Minus
3L 28110227 3L 6665015..6665114 457..358 500 100 Minus
3L 28110227 3L 6664847..6664935 545..457 445 100 Minus
3L 28110227 3L 9400584..9400752 356..188 290 78.1 Minus
X 23542271 X 1159150..1159337 375..188 235 75 Minus
Blast to na_te.dros performed on 2014-11-27 01:02:43 has no hits.

BS16866.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:34 Download gff for BS16866.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-4-RA 1..690 17..706 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:35 Download gff for BS16866.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-4-RA 124..831 6..715 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:43:06 Download gff for BS16866.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-4-RA 135..822 17..704 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:34 Download gff for BS16866.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-4-RA 124..831 6..715 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:17:03 Download gff for BS16866.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-4-RA 135..822 17..704 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:17:03 Download gff for BS16866.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6664433..6664591 546..704 99 <- Minus
3L 6664847..6664934 458..545 100 <- Minus
3L 6665015..6665114 358..457 100 <- Minus
3L 6665167..6665507 17..357 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:43:06 Download gff for BS16866.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6658267..6658607 17..357 100   Minus
arm_3L 6657947..6658034 458..545 100 <- Minus
arm_3L 6658115..6658214 358..457 100 <- Minus
arm_3L 6657533..6657691 546..704 99 <- Minus

BS16866.pep Sequence

Translation from 16 to 705

> BS16866.pep
MLTTQQTEFKMMDNGTETLADSPSSSSEDLKTLSDMDIRKPVTEIVDLRL
KHPLENTWTLWYLENDRSKNWEDMQNEITSFDMVEDFWSLYNHIKQPSEI
RVGSDYSLFKKGIQPMWEDDANKFGGRWVINMGRGSKAELDKLWLDVLLI
LIGEAFENTEEVCGAVINLRGKSNKISIWTANGHNELAVMEIGLKLRDLL
VLPPHQLQYQLHKDTMCKQGSVIKAVYCV*

BS16866.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:19
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-4-PA 229 CG10124-PA 1..229 1..229 1216 100 Plus
eIF-4E-PC 248 CG4035-PC 69..246 51..227 724 74.7 Plus
eIF-4E-PI 259 CG4035-PI 80..257 51..227 724 74.7 Plus
eIF-4E-PH 259 CG4035-PH 80..257 51..227 724 74.7 Plus
eIF-4E-PD 259 CG4035-PD 80..257 51..227 724 74.7 Plus