Clone BS16867 Report

Search the DGRC for BS16867

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:168
Well:67
Vector:pDNR-Dual
Associated Gene/Transcriptparvin-RA
Protein status:BS16867.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16867.3prime Sequence

907 bp (805 high quality bases) assembled on 2007-05-15

> BS16867.3prime
ATGGTCTAGAAAGCTTTCAGGCGAAGTCCCTGAACATGGTGAACAGGCTG
TATAGGACGCGCAGGGTGGACTTGAGGTCCATGTTCACGATGTCCTCCGG
CCGCGCCTTTGGTTTGGGCAGGCCCACGTCCTGCATCAGGTCGAAGGCGA
AGGCCACGTTGCTGACCATCTGATCCACGTCCTGCGGCGTCAAATGGAAC
TCGTGCAGCGGCACAAAGAATCCACCGAGCAGGCCCATCAGCAGGCACAG
GTATACGCCGTCGCGAAAGTCCGTGTTCAGATCGCTGATCTCAAAGTTCA
GCTTGGCCAGGTGCTTGTTCACGAACGTGATCAAGGACTTCTTCACCACG
GCCAGCTTGTCCGGCGCACAGTCGATCAGCGTGTCGAAGGCGTCCTTTTC
GCAGCGCATGCCCAGGTCGTCGTACTCGGACGTTATCTGCTCCTGGAACT
TCTGCGCGTTCAGCACGCCCGCATTCTTCTCCGCAATCACGACGGTCACG
AACACGTTCTCTGGCAGGCGAACGGGCGCCCGGAAGTGACGCACCAGTGC
CACCAGCAGATGTAATATGGCCACAATGTTCTTCGAGTGCACGCTGGCCA
CCGACCACTTGGGAATCTTTTGGTGAAAGCCGAGTGTATGGTTGACGGCC
TTCAGGACGATGTTGAGCTTCTCGTGCTGGCCCTGCTCTGACTGGGTGAC
CTCAGGAACGTCCAGCTTCTTGCCGGTGAGCTTCTCCCACAGCTTGTGCA
GCACCTGGCCGTCATACATGTCCTCTTCCAGGTGCTGAACAATTATGCGC
TGCTCGGCCAACTCGTCGTTGATCCAGTCGACGAGGATGCGCTGCACCTT
TATCACCTGGGGATCACTGATGGAATGTGGATCGATGACGGCGCGCTGTT
CGTGCTC

BS16867.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG32528-PA 1104 CG32528-RA 214..1104 907..17 4380 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
parvin-RB 1840 CG32528-RB 362..1252 907..17 4410 99.7 Minus
parvin-RA 1801 CG32528-RA 323..1213 907..17 4410 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:26:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19747250..19747870 637..17 3105 100 Minus
X 23542271 X 19746813..19747082 907..638 1305 98.9 Minus
Blast to na_te.dros performed on 2015-02-13 15:26:14 has no hits.

BS16867.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:25:47 Download gff for BS16867.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32528-PA 214..1104 17..907 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:16:35 Download gff for BS16867.3prime
Subject Subject Range Query Range Percent Splice Strand
parvin-RA 346..1236 17..907 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:45:44 Download gff for BS16867.3prime
Subject Subject Range Query Range Percent Splice Strand
parvin-RA 323..1213 17..907 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:45:44 Download gff for BS16867.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19746813..19747082 638..907 98 -> Minus
X 19747250..19747870 17..637 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:16:35 Download gff for BS16867.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19640846..19641115 638..907 98 -> Minus
arm_X 19641283..19641903 17..637 100   Minus

BS16867.5prime Sequence

794 bp (791 high quality bases) assembled on 2007-05-15

> BS16867.5prime
GAAGTTATCAGTCGACATGTCCACACTGAACCGCCCTAAATCCCCGCACA
CGCCCACCGCCATTAAAAAGGGCGAGAAGGAGGACAGCTTCTGGGACAAG
TTCAGCACTTTGGGCCGCAAACGCGGCACCCGCGAAGTGAAGAAGGTCCA
AGAGGAGGGCAAGTACGCCATCGACTCGCCTGGATCGCCCAGCCAGTATG
ACATCCCGCCGGAGGACTATGCCCTGCGCGAGCACGAACAGCGCGCCGTC
ATCGATCCACAGTCCATCAGTGATCCCCAGGTGATAAAGCTGCAGCGCAT
CCTCGTCGACTGGATCAACGACGAGCTGGCCGAGCAGCGCATAATTGTTC
AGCACCTGGAAGAGGACATGTATGACGGCCAGGTGCTGCACAAGCTGTGG
GAGAAGCTCACCGGCAAGAAGCTGGACGTTCCTGAGGTCACCCAGTCAGA
GCAGGGCCAGCACGAGAAGCTCAACATCGTCCTGAAGGCCGTCAACCATA
CACTCGGCTTTCACCAAAAGATTCCCAAGTGGTCGGTGGCCAGCGTGCAC
TCGAAGAACATTGTGGCCATATTACATCTGCTGGTGGCACTGGTGCGTCA
CTTCCGGGCGCCCGTTCGCCTGCCAGAGAACGTGTTCGTGACCGTCGTGA
TTGCGGAGAAGAATGCGGGCGTGCTGAACGCGCAGAAGTTCCAGGAGCAG
ATAACGTCCGAGTACGACGACCTGNGCATGCGCTGCGAAAAGGACGCCTT
CGACACGCTGATCGACTGTGCGCCGGACAAGCTGGCCGTGGTGA

BS16867.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG32528-PA 1104 CG32528-RA 1..778 17..794 3871 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
parvin-RB 1840 CG32528-RB 148..926 16..794 3884 99.9 Plus
parvin-RA 1801 CG32528-RA 109..887 16..794 3884 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19747250..19747544 500..794 1464 99.7 Plus
X 23542271 X 19746811..19747082 228..499 1360 100 Plus
X 23542271 X 19746188..19746309 16..137 610 100 Plus
X 23542271 X 19746640..19746732 136..228 465 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:20:40 has no hits.

BS16867.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:20:13 Download gff for BS16867.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32528-PA 1..777 17..793 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:52:26 Download gff for BS16867.5prime
Subject Subject Range Query Range Percent Splice Strand
parvin-RA 126..909 9..793 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:02:43 Download gff for BS16867.5prime
Subject Subject Range Query Range Percent Splice Strand
parvin-RA 103..886 9..793 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:02:43 Download gff for BS16867.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19746811..19747082 228..499 100 -> Plus
X 19746185..19746309 11..137 96 -> Plus
X 19746642..19746731 138..227 100 -> Plus
X 19747250..19747543 500..793 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:52:26 Download gff for BS16867.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19640218..19640342 11..137 96 -> Plus
arm_X 19640675..19640764 138..227 100 -> Plus
arm_X 19640844..19641115 228..499 100 -> Plus
arm_X 19641283..19641576 500..793 99   Plus

BS16867.complete Sequence

1136 bp assembled on 2007-05-07

GenBank Submission: FJ638204

> BS16867.complete
GAAGTTATCAGTCGACATGTCCACACTGAACCGCCCTAAATCCCCGCACA
CGCCCACCGCCATTAAAAAGGGCGAGAAGGAGGACAGCTTCTGGGACAAG
TTCAGCACTTTGGGCCGCAAACGCGGCACCCGCGAAGTGAAGAAGGTCCA
AGAGGAGGGCAAGTACGCCATCGACTCGCCTGGATCGCCCAGCCAGTATG
ACATCCCGCCGGAGGACTATGCCCTGCGCGAGCACGAACAGCGCGCCGTC
ATCGATCCACAGTCCATCAGTGATCCCCAGGTGATAAAGCTGCAGCGCAT
CCTCGTCGACTGGATCAACGACGAGCTGGCCGAGCAGCGCATAATTGTTC
AGCACCTGGAAGAGGACATGTATGACGGCCAGGTGCTGCACAAGCTGTGG
GAGAAGCTCACCGGCAAGAAGCTGGACGTTCCTGAGGTCACCCAGTCAGA
GCAGGGCCAGCACGAGAAGCTCAACATCGTCCTGAAGGCCGTCAACCATA
CACTCGGCTTTCACCAAAAGATTCCCAAGTGGTCGGTGGCCAGCGTGCAC
TCGAAGAACATTGTGGCCATATTACATCTGCTGGTGGCACTGGTGCGTCA
CTTCCGGGCGCCCGTTCGCCTGCCAGAGAACGTGTTCGTGACCGTCGTGA
TTGCGGAGAAGAATGCGGGCGTGCTGAACGCGCAGAAGTTCCAGGAGCAG
ATAACGTCCGAGTACGACGACCTGGGCATGCGCTGCGAAAAGGACGCCTT
CGACACGCTGATCGACTGTGCGCCGGACAAGCTGGCCGTGGTGAAGAAGT
CCTTGATCACGTTCGTGAACAAGCACCTGGCCAAGCTGAACTTTGAGATC
AGCGATCTGAACACGGACTTTCGCGACGGCGTATACCTGTGCCTGCTGAT
GGGCCTGCTCGGTGGATTCTTTGTGCCGCTGCACGAGTTCCATTTGACGC
CGCAGGACGTGGATCAGATGGTCAGCAACGTGGCCTTCGCCTTCGACCTG
ATGCAGGACGTGGGCCTGCCCAAACCAAAGGCGCGGCCGGAGGACATCGT
GAACATGGACCTCAAGTCCACCCTGCGCGTCCTATACAGCCTGTTCACCA
TGTTCAGGGACTTCGCCTGAAAGCTTTCTAGACCAT

BS16867.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:36:07
Subject Length Description Subject Range Query Range Score Percent Strand
parvin-RB 1104 CG32528-PB 1..1104 17..1120 5520 100 Plus
parvin-RA 1104 CG32528-PA 1..1104 17..1120 5520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
parvin-RB 1840 CG32528-RB 148..1252 16..1120 5525 100 Plus
parvin-RA 1801 CG32528-RA 109..1213 16..1120 5525 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19747250..19747870 500..1120 3105 100 Plus
X 23542271 X 19746811..19747082 228..499 1360 100 Plus
X 23542271 X 19746188..19746309 16..137 610 100 Plus
X 23542271 X 19746640..19746732 136..228 465 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:36:06 has no hits.

BS16867.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:35 Download gff for BS16867.complete
Subject Subject Range Query Range Percent Splice Strand
CG32528-RA 1..1104 17..1120 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:37 Download gff for BS16867.complete
Subject Subject Range Query Range Percent Splice Strand
CG32528-RA 126..1236 9..1120 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:55 Download gff for BS16867.complete
Subject Subject Range Query Range Percent Splice Strand
parvin-RA 133..1235 17..1119 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:35 Download gff for BS16867.complete
Subject Subject Range Query Range Percent Splice Strand
CG32528-RA 126..1236 9..1120 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:54 Download gff for BS16867.complete
Subject Subject Range Query Range Percent Splice Strand
parvin-RA 110..1212 17..1119 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:54 Download gff for BS16867.complete
Subject Subject Range Query Range Percent Splice Strand
X 19746189..19746309 17..137 100 -> Plus
X 19746642..19746731 138..227 100 -> Plus
X 19746811..19747082 228..499 100 -> Plus
X 19747250..19747869 500..1119 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:55 Download gff for BS16867.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19640222..19640342 17..137 100 -> Plus
arm_X 19640675..19640764 138..227 100 -> Plus
arm_X 19640844..19641115 228..499 100 -> Plus
arm_X 19641283..19641902 500..1119 100   Plus

BS16867.pep Sequence

Translation from 16 to 1119

> BS16867.pep
MSTLNRPKSPHTPTAIKKGEKEDSFWDKFSTLGRKRGTREVKKVQEEGKY
AIDSPGSPSQYDIPPEDYALREHEQRAVIDPQSISDPQVIKLQRILVDWI
NDELAEQRIIVQHLEEDMYDGQVLHKLWEKLTGKKLDVPEVTQSEQGQHE
KLNIVLKAVNHTLGFHQKIPKWSVASVHSKNIVAILHLLVALVRHFRAPV
RLPENVFVTVVIAEKNAGVLNAQKFQEQITSEYDDLGMRCEKDAFDTLID
CAPDKLAVVKKSLITFVNKHLAKLNFEISDLNTDFRDGVYLCLLMGLLGG
FFVPLHEFHLTPQDVDQMVSNVAFAFDLMQDVGLPKPKARPEDIVNMDLK
STLRVLYSLFTMFRDFA*

BS16867.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:17
Subject Length Description Subject Range Query Range Score Percent Strand
parvin-PB 367 CG32528-PB 1..367 1..367 1904 100 Plus
parvin-PA 367 CG32528-PA 1..367 1..367 1904 100 Plus