Clone Sequence Records
BS16867.3prime Sequence
907 bp (805 high quality bases) assembled on 2007-05-15
> BS16867.3prime
ATGGTCTAGAAAGCTTTCAGGCGAAGTCCCTGAACATGGTGAACAGGCTG
TATAGGACGCGCAGGGTGGACTTGAGGTCCATGTTCACGATGTCCTCCGG
CCGCGCCTTTGGTTTGGGCAGGCCCACGTCCTGCATCAGGTCGAAGGCGA
AGGCCACGTTGCTGACCATCTGATCCACGTCCTGCGGCGTCAAATGGAAC
TCGTGCAGCGGCACAAAGAATCCACCGAGCAGGCCCATCAGCAGGCACAG
GTATACGCCGTCGCGAAAGTCCGTGTTCAGATCGCTGATCTCAAAGTTCA
GCTTGGCCAGGTGCTTGTTCACGAACGTGATCAAGGACTTCTTCACCACG
GCCAGCTTGTCCGGCGCACAGTCGATCAGCGTGTCGAAGGCGTCCTTTTC
GCAGCGCATGCCCAGGTCGTCGTACTCGGACGTTATCTGCTCCTGGAACT
TCTGCGCGTTCAGCACGCCCGCATTCTTCTCCGCAATCACGACGGTCACG
AACACGTTCTCTGGCAGGCGAACGGGCGCCCGGAAGTGACGCACCAGTGC
CACCAGCAGATGTAATATGGCCACAATGTTCTTCGAGTGCACGCTGGCCA
CCGACCACTTGGGAATCTTTTGGTGAAAGCCGAGTGTATGGTTGACGGCC
TTCAGGACGATGTTGAGCTTCTCGTGCTGGCCCTGCTCTGACTGGGTGAC
CTCAGGAACGTCCAGCTTCTTGCCGGTGAGCTTCTCCCACAGCTTGTGCA
GCACCTGGCCGTCATACATGTCCTCTTCCAGGTGCTGAACAATTATGCGC
TGCTCGGCCAACTCGTCGTTGATCCAGTCGACGAGGATGCGCTGCACCTT
TATCACCTGGGGATCACTGATGGAATGTGGATCGATGACGGCGCGCTGTT
CGTGCTC
BS16867.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:25:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32528-PA | 1104 | CG32528-RA | 214..1104 | 907..17 | 4380 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:26:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
parvin-RB | 1840 | CG32528-RB | 362..1252 | 907..17 | 4410 | 99.7 | Minus |
parvin-RA | 1801 | CG32528-RA | 323..1213 | 907..17 | 4410 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:26:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19747250..19747870 | 637..17 | 3105 | 100 | Minus |
X | 23542271 | X | 19746813..19747082 | 907..638 | 1305 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:26:14 has no hits.
BS16867.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:25:47 Download gff for
BS16867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32528-PA | 214..1104 | 17..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:16:35 Download gff for
BS16867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
parvin-RA | 346..1236 | 17..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:45:44 Download gff for
BS16867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
parvin-RA | 323..1213 | 17..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:45:44 Download gff for
BS16867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19746813..19747082 | 638..907 | 98 | -> | Minus |
X | 19747250..19747870 | 17..637 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:16:35 Download gff for
BS16867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19640846..19641115 | 638..907 | 98 | -> | Minus |
arm_X | 19641283..19641903 | 17..637 | 100 | | Minus |
BS16867.5prime Sequence
794 bp (791 high quality bases) assembled on 2007-05-15
> BS16867.5prime
GAAGTTATCAGTCGACATGTCCACACTGAACCGCCCTAAATCCCCGCACA
CGCCCACCGCCATTAAAAAGGGCGAGAAGGAGGACAGCTTCTGGGACAAG
TTCAGCACTTTGGGCCGCAAACGCGGCACCCGCGAAGTGAAGAAGGTCCA
AGAGGAGGGCAAGTACGCCATCGACTCGCCTGGATCGCCCAGCCAGTATG
ACATCCCGCCGGAGGACTATGCCCTGCGCGAGCACGAACAGCGCGCCGTC
ATCGATCCACAGTCCATCAGTGATCCCCAGGTGATAAAGCTGCAGCGCAT
CCTCGTCGACTGGATCAACGACGAGCTGGCCGAGCAGCGCATAATTGTTC
AGCACCTGGAAGAGGACATGTATGACGGCCAGGTGCTGCACAAGCTGTGG
GAGAAGCTCACCGGCAAGAAGCTGGACGTTCCTGAGGTCACCCAGTCAGA
GCAGGGCCAGCACGAGAAGCTCAACATCGTCCTGAAGGCCGTCAACCATA
CACTCGGCTTTCACCAAAAGATTCCCAAGTGGTCGGTGGCCAGCGTGCAC
TCGAAGAACATTGTGGCCATATTACATCTGCTGGTGGCACTGGTGCGTCA
CTTCCGGGCGCCCGTTCGCCTGCCAGAGAACGTGTTCGTGACCGTCGTGA
TTGCGGAGAAGAATGCGGGCGTGCTGAACGCGCAGAAGTTCCAGGAGCAG
ATAACGTCCGAGTACGACGACCTGNGCATGCGCTGCGAAAAGGACGCCTT
CGACACGCTGATCGACTGTGCGCCGGACAAGCTGGCCGTGGTGA
BS16867.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:20:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32528-PA | 1104 | CG32528-RA | 1..778 | 17..794 | 3871 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:20:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
parvin-RB | 1840 | CG32528-RB | 148..926 | 16..794 | 3884 | 99.9 | Plus |
parvin-RA | 1801 | CG32528-RA | 109..887 | 16..794 | 3884 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:20:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19747250..19747544 | 500..794 | 1464 | 99.7 | Plus |
X | 23542271 | X | 19746811..19747082 | 228..499 | 1360 | 100 | Plus |
X | 23542271 | X | 19746188..19746309 | 16..137 | 610 | 100 | Plus |
X | 23542271 | X | 19746640..19746732 | 136..228 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:20:40 has no hits.
BS16867.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:20:13 Download gff for
BS16867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32528-PA | 1..777 | 17..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:52:26 Download gff for
BS16867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
parvin-RA | 126..909 | 9..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:02:43 Download gff for
BS16867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
parvin-RA | 103..886 | 9..793 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:02:43 Download gff for
BS16867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19746811..19747082 | 228..499 | 100 | -> | Plus |
X | 19746185..19746309 | 11..137 | 96 | -> | Plus |
X | 19746642..19746731 | 138..227 | 100 | -> | Plus |
X | 19747250..19747543 | 500..793 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:52:26 Download gff for
BS16867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19640218..19640342 | 11..137 | 96 | -> | Plus |
arm_X | 19640675..19640764 | 138..227 | 100 | -> | Plus |
arm_X | 19640844..19641115 | 228..499 | 100 | -> | Plus |
arm_X | 19641283..19641576 | 500..793 | 99 | | Plus |
BS16867.complete Sequence
1136 bp assembled on 2007-05-07
GenBank Submission: FJ638204
> BS16867.complete
GAAGTTATCAGTCGACATGTCCACACTGAACCGCCCTAAATCCCCGCACA
CGCCCACCGCCATTAAAAAGGGCGAGAAGGAGGACAGCTTCTGGGACAAG
TTCAGCACTTTGGGCCGCAAACGCGGCACCCGCGAAGTGAAGAAGGTCCA
AGAGGAGGGCAAGTACGCCATCGACTCGCCTGGATCGCCCAGCCAGTATG
ACATCCCGCCGGAGGACTATGCCCTGCGCGAGCACGAACAGCGCGCCGTC
ATCGATCCACAGTCCATCAGTGATCCCCAGGTGATAAAGCTGCAGCGCAT
CCTCGTCGACTGGATCAACGACGAGCTGGCCGAGCAGCGCATAATTGTTC
AGCACCTGGAAGAGGACATGTATGACGGCCAGGTGCTGCACAAGCTGTGG
GAGAAGCTCACCGGCAAGAAGCTGGACGTTCCTGAGGTCACCCAGTCAGA
GCAGGGCCAGCACGAGAAGCTCAACATCGTCCTGAAGGCCGTCAACCATA
CACTCGGCTTTCACCAAAAGATTCCCAAGTGGTCGGTGGCCAGCGTGCAC
TCGAAGAACATTGTGGCCATATTACATCTGCTGGTGGCACTGGTGCGTCA
CTTCCGGGCGCCCGTTCGCCTGCCAGAGAACGTGTTCGTGACCGTCGTGA
TTGCGGAGAAGAATGCGGGCGTGCTGAACGCGCAGAAGTTCCAGGAGCAG
ATAACGTCCGAGTACGACGACCTGGGCATGCGCTGCGAAAAGGACGCCTT
CGACACGCTGATCGACTGTGCGCCGGACAAGCTGGCCGTGGTGAAGAAGT
CCTTGATCACGTTCGTGAACAAGCACCTGGCCAAGCTGAACTTTGAGATC
AGCGATCTGAACACGGACTTTCGCGACGGCGTATACCTGTGCCTGCTGAT
GGGCCTGCTCGGTGGATTCTTTGTGCCGCTGCACGAGTTCCATTTGACGC
CGCAGGACGTGGATCAGATGGTCAGCAACGTGGCCTTCGCCTTCGACCTG
ATGCAGGACGTGGGCCTGCCCAAACCAAAGGCGCGGCCGGAGGACATCGT
GAACATGGACCTCAAGTCCACCCTGCGCGTCCTATACAGCCTGTTCACCA
TGTTCAGGGACTTCGCCTGAAAGCTTTCTAGACCAT
BS16867.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:36:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
parvin-RB | 1104 | CG32528-PB | 1..1104 | 17..1120 | 5520 | 100 | Plus |
parvin-RA | 1104 | CG32528-PA | 1..1104 | 17..1120 | 5520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:36:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
parvin-RB | 1840 | CG32528-RB | 148..1252 | 16..1120 | 5525 | 100 | Plus |
parvin-RA | 1801 | CG32528-RA | 109..1213 | 16..1120 | 5525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:36:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19747250..19747870 | 500..1120 | 3105 | 100 | Plus |
X | 23542271 | X | 19746811..19747082 | 228..499 | 1360 | 100 | Plus |
X | 23542271 | X | 19746188..19746309 | 16..137 | 610 | 100 | Plus |
X | 23542271 | X | 19746640..19746732 | 136..228 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:36:06 has no hits.
BS16867.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:35 Download gff for
BS16867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32528-RA | 1..1104 | 17..1120 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:37 Download gff for
BS16867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32528-RA | 126..1236 | 9..1120 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:55 Download gff for
BS16867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
parvin-RA | 133..1235 | 17..1119 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:35 Download gff for
BS16867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32528-RA | 126..1236 | 9..1120 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:54 Download gff for
BS16867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
parvin-RA | 110..1212 | 17..1119 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:54 Download gff for
BS16867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19746189..19746309 | 17..137 | 100 | -> | Plus |
X | 19746642..19746731 | 138..227 | 100 | -> | Plus |
X | 19746811..19747082 | 228..499 | 100 | -> | Plus |
X | 19747250..19747869 | 500..1119 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:55 Download gff for
BS16867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19640222..19640342 | 17..137 | 100 | -> | Plus |
arm_X | 19640675..19640764 | 138..227 | 100 | -> | Plus |
arm_X | 19640844..19641115 | 228..499 | 100 | -> | Plus |
arm_X | 19641283..19641902 | 500..1119 | 100 | | Plus |
BS16867.pep Sequence
Translation from 16 to 1119
> BS16867.pep
MSTLNRPKSPHTPTAIKKGEKEDSFWDKFSTLGRKRGTREVKKVQEEGKY
AIDSPGSPSQYDIPPEDYALREHEQRAVIDPQSISDPQVIKLQRILVDWI
NDELAEQRIIVQHLEEDMYDGQVLHKLWEKLTGKKLDVPEVTQSEQGQHE
KLNIVLKAVNHTLGFHQKIPKWSVASVHSKNIVAILHLLVALVRHFRAPV
RLPENVFVTVVIAEKNAGVLNAQKFQEQITSEYDDLGMRCEKDAFDTLID
CAPDKLAVVKKSLITFVNKHLAKLNFEISDLNTDFRDGVYLCLLMGLLGG
FFVPLHEFHLTPQDVDQMVSNVAFAFDLMQDVGLPKPKARPEDIVNMDLK
STLRVLYSLFTMFRDFA*
BS16867.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
parvin-PB | 367 | CG32528-PB | 1..367 | 1..367 | 1904 | 100 | Plus |
parvin-PA | 367 | CG32528-PA | 1..367 | 1..367 | 1904 | 100 | Plus |