Clone Sequence Records
BS16876.complete Sequence
1976 bp assembled on 2009-12-07
GenBank Submission: KX803935
> BS16876.complete
GAAGTTATCAGTCGACATGTCGTCGGATACGAATTCGTGTACTAGTTTCT
TTGCCCAGGAGCACGCGAATGCCACATTGTCGCAGTATTTCCAGCAGCTT
AACTCGCACGTTGCTGCTGCAGCGGCGGGCAATAGCGGTGGCAACAGCAG
CAGCAGCAACAACAACAACAGCAGCGGCAACAACAGCAGCAGCGGCAACA
GCGACAGCGGAAATGATGGCAGCATGACAGGATCATCGGGAACCATGGAC
AACCATCGCAGCAGTGTTAGCAGCAATGATTCGGGCAAGAGTAGCGCCAC
AGGAGGCGGCGGGGCAGGTGCCACCAGCAACAATGGCGTGAATGCCTGGG
CCTTGCAGCAGCAGCAACAAACCGCCGCCCTGCACCATCAGCAACAGCAG
CAGCATCAACAGCAGCAGCAACACCAACAGCACCTACAGCAACACCATCA
AGCGCACCATCAGCATGTCCTGCAGCAGCAGCAGCAGCAGCAACAGCAGC
ACTCCCAGCATCAGCATCAGCAGCAACATCACGGCCACCCGTTGCATCCG
CATCATACACACCAGCAGCAACAACAACAACAACAGCAGCAGCAGCCGCC
GCCGCAACACCACCAGCAGCAGCAACAGCAGCACGCACAGCAGCAGCAGC
AGCAGCATCATGCCGCCCAGCTGGCACATACACTGTCATCGGCCGCCGTT
GCTGCTGCAGCCGGGAATACCGGTGGCAACACCAACCCCCACTCCATTTT
CGGCACCGGCAACTTCCACTACAAGACGAACAACTCGTGGACGCTGCCCA
CGCTAACGTACCAGAGGATTTACCAGGAGAATCCCCATTACCAGCGCAAC
TCCTTCATGGATCCGCAGAGTAATGCCGCTGCAGCTGCAGCAGCTGCTGC
TGCCAGTTGCAATGCTGCCGCTGTTGCGGCAGCCGCTGCAGTTGCAAGTG
GCAACCAGGGATCGAATGGGAATGCCAGTGGCAATGGTAATGCTGTTGTG
GCGGCAACTGGTAATGGAAATGGTGGAAATCCCGGCCAGAATAACAACAA
CAATAACGGCAACAATAGTGGCAATAGCAACAATAACAGCAACAACAATG
TGTCCTCCGTGCAACATGTGGCAAATGCCGTCGCAGCGGCAGTGATCGCC
AATGAGCATCACAACCATTTGAACAGCTTGAAAGCGCGATTTCAGCCAGC
CAGCTCAGGCAGGAAATCTCCGTTTTTGGGTTTCATTTGCAAATCAAACG
GCAAATCCACATCGAATAGCAAAGAGATCATCTGCCCAGATGACAAATAC
AAGGAGGAGGGCGACATCTGGAATGTTGAGGCGCAAACAGCGTTTCTCGG
CCCAAATCTGTGGGACAAGACCCTGCCCTATGATGCCGACCTCAAGGTAA
CACAATATGCCGACCTAGACGAATTCCTGTCGGAGAACAACATACCTGAT
GGCCTGCCCGGCACGCATCTGGGCCACTCCAGTGGCCTGGGCCACCGGTC
CGATTCCCTGGGTCACGCAGCGGGTCTGTCTCTTGGTCTTGGCCACATAA
CCACAAAGCGAGAGCGGTCGCCCTCGCCATCCGACTGCATCAGTCCGGAC
ACGCTAAATCCGCCATCGCCGGCCGAGTCAACATTTTCGTTCGCCTCCTC
GGGCCGTGACTTTGATCCGCGAACCAGAGCCTTCTCCGACGAGGAGCTCA
AGCCGCAGCCGATGATCAAAAAGTCACGCAAGCAATTCGTTCCAGATGAG
CTCAAGGACGACAAGTACTGGGCACGTCGCCGGAAGAACAACATTGCCGC
CAAGCGATCCCGCGATGCCCGGCGCCAGAAGGAGAACCAGATTGCGATGC
GGGCACGCTACTTGGAGAAGGAAAATGCAACATTACATCAGGAGGTGGAG
CAGTTGAAACAGGAGAACATGGACTTGCGTGCACGTCTATCGAAATTCCA
AGATGTGTAAAAGCTTTCTAGACCAT
BS16876.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:05:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdp1-RD | 1944 | CG17888-PD | 1..1944 | 17..1960 | 9720 | 100 | Plus |
| Pdp1-RJ | 1902 | CG17888-PJ | 1..1195 | 17..1211 | 5975 | 100 | Plus |
| Pdp1-RO | 795 | CG17888-PO | 42..795 | 1207..1960 | 3770 | 100 | Plus |
| Pdp1-RJ | 1902 | CG17888-PJ | 1192..1902 | 1250..1960 | 3555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:05:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdp1-RD | 4702 | CG17888-RD | 769..2713 | 16..1960 | 9725 | 100 | Plus |
| Pdp1-RJ | 4643 | CG17888-RJ | 752..1947 | 16..1211 | 5980 | 100 | Plus |
| Pdp1-RO | 2870 | CG17888-RO | 128..881 | 1207..1960 | 3770 | 100 | Plus |
| Pdp1-RJ | 4643 | CG17888-RJ | 1944..2654 | 1250..1960 | 3555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:05:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7830386..7831579 | 1209..16 | 5970 | 100 | Minus |
| 3L | 28110227 | 3L | 7816484..7816725 | 1873..1632 | 1210 | 100 | Minus |
| 3L | 28110227 | 3L | 7817437..7817662 | 1631..1406 | 1130 | 100 | Minus |
| 3L | 28110227 | 3L | 7818069..7818224 | 1405..1250 | 780 | 100 | Minus |
| 3L | 28110227 | 3L | 7816326..7816412 | 1960..1874 | 435 | 100 | Minus |
| 3L | 28110227 | 3L | 7819987..7820032 | 1251..1206 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:05:24 has no hits.
BS16876.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:05 Download gff for
BS16876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdp1-RD | 1..1944 | 17..1960 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:38:38 Download gff for
BS16876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdp1-RD | 770..2711 | 17..1958 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:49 Download gff for
BS16876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdp1-RD | 770..2711 | 17..1958 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:05 Download gff for
BS16876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdp1-RD | 762..2713 | 9..1960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:10:38 Download gff for
BS16876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdp1-RD | 770..2711 | 17..1958 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:10:38 Download gff for
BS16876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7816328..7816412 | 1874..1958 | 100 | <- | Minus |
| 3L | 7816484..7816725 | 1632..1873 | 100 | <- | Minus |
| 3L | 7817437..7817662 | 1406..1631 | 100 | <- | Minus |
| 3L | 7818069..7818223 | 1251..1405 | 100 | <- | Minus |
| 3L | 7819988..7820029 | 1209..1250 | 100 | <- | Minus |
| 3L | 7830387..7831578 | 17..1208 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:49 Download gff for
BS16876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7809584..7809825 | 1632..1873 | 100 | <- | Minus |
| arm_3L | 7809428..7809512 | 1874..1958 | 100 | <- | Minus |
| arm_3L | 7810537..7810762 | 1406..1631 | 100 | <- | Minus |
| arm_3L | 7811169..7811323 | 1251..1405 | 100 | <- | Minus |
| arm_3L | 7813088..7813129 | 1209..1250 | 100 | <- | Minus |
| arm_3L | 7823487..7824678 | 17..1208 | 100 | | Minus |
BS16876.3prime Sequence
852 bp (802 high quality bases) assembled on 2007-05-15
> BS16876.3prime
ATGGTCTAGAAAGCTTTTACACATCTTGGAATTTCGATAGACGTGCACGC
AAGTCCATGTTCTCCTGTTTCAACTGCTCCACCTCCTGATGTAATGTTGC
ATTTTCCTTCTCCAAGTAGCGTGCCCGCATCGCAATCTGGTTCTCCTTCT
GGCGCCGGGCATCGCGGGATCGCTTGGCGGCAATGTTGTTCTTCCGGCGA
CGTGCCCAGTACTTGTCGTCCTTGAGCTCATCTGGAACGAATTGCTTGCG
TGACTTTTTGATCATCGGCTGCGGCTTGAGCTCCTCGTCGGAGAAGGCTC
TGGTTCGCGGATCAAAGTCACGGCCCGAGGAGGCGAACGAAAATGTTGAC
TCGGCCGGCGATGGCGGATTTAGCGTGTCCGGACTGATGCAGTCGGATGG
CGAGGGCGACCGCTCTCGCTTTGTGGTTATGTGGCCAAGACCAAGAGACA
GACCCGCTGCGTGACCCAGGGAATCGGACCGGTGGCCCAGGCCACTGGAG
TGGCCCAGATGCGTGCCGGGCAGGCCATCAGGTATGTTGTTCTCCGACAG
GAATTCGTCTAGGTCGGCATATTGTGTTACCTTGAGGTCGGCATCATAGG
GCAGGGTCTTGTCCCACAGATTTGGGCCGAGAAACGCTGTTTGCGCCTCA
ACATTCCAGATGTCGCCCTCCTCCTTGTATTTGTCATCTGGGCAGATGAT
CTCTTTGCTATTCGATGTGGATTTGCCGTTTGATTTGCAAATGAAACCCA
AAAACGGAGATTTCCTGCCTGAGCTGGCTGGCTGAAATCGCGCTTTCAAG
CTGTTCAAATGGTTGTGATGCTCATTGGCGATCACTGCCGCTGCGACGGC
AT
BS16876.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:29:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17888-PD | 1944 | Pdp1-RD | 1109..1944 | 852..17 | 4180 | 100 | Minus |
| CG17888-PG | 855 | Pdp1-RG | 103..855 | 769..17 | 3765 | 100 | Minus |
| CG17888-PE | 855 | Pdp1-RE | 103..855 | 769..17 | 3765 | 100 | Minus |
| CG17888-PC | 1713 | Pdp1-RC | 1000..1713 | 730..17 | 3570 | 100 | Minus |
| CG17888-PH | 1062 | Pdp1-RH | 352..1062 | 727..17 | 3555 | 100 | Minus |
| CG17888-PF | 753 | Pdp1-RF | 43..753 | 727..17 | 3555 | 100 | Minus |
| CG17888-PB | 813 | Pdp1-RB | 103..813 | 727..17 | 3555 | 100 | Minus |
| CG17888-PA | 813 | Pdp1-RA | 103..813 | 727..17 | 3555 | 100 | Minus |
| CG17888-PH | 1062 | Pdp1-RH | 269..355 | 852..766 | 435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:22:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdp1-RD | 4702 | CG17888-RD | 1878..2713 | 852..17 | 4180 | 100 | Minus |
| Pdp1-RO | 2870 | CG17888-RO | 128..881 | 770..17 | 3770 | 100 | Minus |
| Pdp1-RG | 5107 | CG17888-RG | 2366..3118 | 769..17 | 3765 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:22:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7816484..7816725 | 104..345 | 1210 | 100 | Plus |
| 3L | 28110227 | 3L | 7817437..7817662 | 346..571 | 1130 | 100 | Plus |
| 3L | 28110227 | 3L | 7818069..7818224 | 572..727 | 780 | 100 | Plus |
| 3L | 28110227 | 3L | 7816326..7816412 | 17..103 | 435 | 100 | Plus |
| 3L | 28110227 | 3L | 7830386..7830470 | 768..852 | 425 | 100 | Plus |
| 3L | 28110227 | 3L | 7819987..7820032 | 726..771 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:22:16 has no hits.
BS16876.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:29:13 Download gff for
BS16876.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17888-PD | 1109..1944 | 17..852 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:33:55 Download gff for
BS16876.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdp1-RD | 1878..2713 | 17..852 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:54 Download gff for
BS16876.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdp1-RD | 1878..2713 | 17..852 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:54 Download gff for
BS16876.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7816326..7816412 | 17..103 | 100 | <- | Plus |
| 3L | 7816484..7816725 | 104..345 | 100 | <- | Plus |
| 3L | 7817437..7817662 | 346..571 | 100 | <- | Plus |
| 3L | 7818069..7818223 | 572..726 | 100 | <- | Plus |
| 3L | 7819988..7820029 | 727..768 | 100 | <- | Plus |
| 3L | 7830387..7830470 | 769..852 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:33:55 Download gff for
BS16876.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7809426..7809512 | 17..103 | 100 | <- | Plus |
| arm_3L | 7809584..7809825 | 104..345 | 100 | <- | Plus |
| arm_3L | 7810537..7810762 | 346..571 | 100 | <- | Plus |
| arm_3L | 7811169..7811323 | 572..726 | 100 | <- | Plus |
| arm_3L | 7813088..7813129 | 727..768 | 100 | <- | Plus |
| arm_3L | 7823487..7823570 | 769..852 | 100 | | Plus |
BS16876.5prime Sequence
913 bp (811 high quality bases) assembled on 2007-05-15
> BS16876.5prime
GAAGTTATCAGTCGACATGTCGTCGGATACGAATTCGTGTACTAGTTTCT
TTGCCCAGGAGCACGCGAATGCCACATTGTCGCAGTATTTCCAGCAGCTT
AACTCGCACGTTGCTGCTGCAGCGGCGGGCAATAGCGGTGGCAACAGCAG
CAGCAGCAACAACAACAACAGCAGCGGCAACAACAGCAGCAGCGGCAACA
GCGACAGCGGAAATGATGGCAGCATGACAGGATCATCGGGAACCATGGAC
AACCATCGCAGCAGTGTTAGCAGCAATGATTCGGGCAAGAGTAGCGCCAC
AGGAGGCGGCGGGGCAGGTGCCACCAGCAACAATGGCGTGAATGCCTGGG
CCTTGCAGCAGCAGCAACAAACCGCCGCCCTGCACCATCAGCAACAGCAG
CAGCATCAACAGCAGCAGCAACACCAACAGCACCTACAGCAACACCATCA
AGCGCACCATCAGCATGTCCTGCAGCAGCAGCAGCAGCAGCAACAGCAGC
ACTCCCAGCATCAGCATCAGCAGCAACATCACGGCCACCCGTTGCATCCG
CATCATACACACCAGCAGCAACAACAACAACAACAGCAGCAGCAGCCGCC
GCCGCAACACCACCAGCAGCAGCAACAGCAGCACGCACAGCAGCAGCAGC
AGCAGCATCATGCCGCCCAGCTGGCACATACACTGTCATCGGCCGCCGTT
GCTGCTGCAGCCGGGAATACCGGTGGCAACACCAACCCCCACTCCATTTT
CGGCACCGGCAACTTCCACTACAAGACGAACAACTCGTGGACGCTGCCCA
CGCTAACGTACCAGAGGATTTACCAGGAGAATCCCATTACCAGCGCAACT
CCTTCATGGATCCGCAGAGTAATGCCGCTGCAGCTGCAGCAGCTGCTGCT
GCCAGTTGCAATG
BS16876.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:23:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17888-PD | 1944 | Pdp1-RD | 1..819 | 17..835 | 4095 | 100 | Plus |
| CG17888-PD | 1944 | Pdp1-RD | 818..898 | 833..913 | 405 | 100 | Plus |
| CG17888-PH | 1062 | Pdp1-RH | 1..58 | 856..913 | 290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdp1-RJ | 4643 | CG17888-RJ | 752..1650 | 16..913 | 4470 | 99.9 | Plus |
| Pdp1-RD | 4702 | CG17888-RD | 769..1667 | 16..913 | 4470 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7830681..7831579 | 913..16 | 4445 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:13:33 has no hits.
BS16876.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:23:08 Download gff for
BS16876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17888-PD | 1..898 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:32:46 Download gff for
BS16876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdp1-RD | 762..1667 | 9..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:23:13 Download gff for
BS16876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdp1-RD | 762..1667 | 9..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:23:13 Download gff for
BS16876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7830681..7831586 | 9..913 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:32:46 Download gff for
BS16876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7823781..7824686 | 9..913 | 99 | | Minus |
BS16876.pep Sequence
Translation from 16 to 1959
> BS16876.pep
MSSDTNSCTSFFAQEHANATLSQYFQQLNSHVAAAAAGNSGGNSSSSNNN
NSSGNNSSSGNSDSGNDGSMTGSSGTMDNHRSSVSSNDSGKSSATGGGGA
GATSNNGVNAWALQQQQQTAALHHQQQQQHQQQQQHQQHLQQHHQAHHQH
VLQQQQQQQQQHSQHQHQQQHHGHPLHPHHTHQQQQQQQQQQQPPPQHHQ
QQQQQHAQQQQQQHHAAQLAHTLSSAAVAAAAGNTGGNTNPHSIFGTGNF
HYKTNNSWTLPTLTYQRIYQENPHYQRNSFMDPQSNAAAAAAAAAASCNA
AAVAAAAAVASGNQGSNGNASGNGNAVVAATGNGNGGNPGQNNNNNNGNN
SGNSNNNSNNNVSSVQHVANAVAAAVIANEHHNHLNSLKARFQPASSGRK
SPFLGFICKSNGKSTSNSKEIICPDDKYKEEGDIWNVEAQTAFLGPNLWD
KTLPYDADLKVTQYADLDEFLSENNIPDGLPGTHLGHSSGLGHRSDSLGH
AAGLSLGLGHITTKRERSPSPSDCISPDTLNPPSPAESTFSFASSGRDFD
PRTRAFSDEELKPQPMIKKSRKQFVPDELKDDKYWARRRKNNIAAKRSRD
ARRQKENQIAMRARYLEKENATLHQEVEQLKQENMDLRARLSKFQDV*
BS16876.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:20:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdp1-PD | 647 | CG17888-PD | 1..647 | 1..647 | 3432 | 100 | Plus |
| Pdp1-PJ | 633 | CG17888-PJ | 1..633 | 1..647 | 3330 | 97.8 | Plus |
| Pdp1-PL | 581 | CG17888-PL | 3..581 | 113..647 | 1500 | 56.6 | Plus |
| Pdp1-PC | 570 | CG17888-PC | 15..570 | 157..647 | 1419 | 57.4 | Plus |
| Pdp1-PO | 264 | CG17888-PO | 15..264 | 398..647 | 1320 | 100 | Plus |
