Clone Sequence Records
BS16877.3prime Sequence
624 bp (624 high quality bases) assembled on 2007-05-15
> BS16877.3prime
ATGGTCTAGAAAGCTTTTAAACCTGAACCAACTCGAACAGGGTGTGGTCC
TCTTCGTCACTATTCACGTCCTCGATGGCCATGGGCAGTGGTGTCAGCTC
CTGGTTGGCGCGGTCGCCCTGCACGCCGTACTTGCGCTCCGCCCGGGAAA
GTCGGAGCCTATAAACCCTCATAATAAGCAGCAGTATTGCAGTACTGGTG
ATTCCCACGAGGATGTAGACAACAGCCTGGCCCGGAAAGTCCACATCGGG
GGACATGGGAGAGCGTTCAACATGAACATCATCCACGGGAAGACCTCCCG
GAGGCTGCACCATTTCCGGTGCCTTGGCATCTCCTGGTGAAACTTGTGTG
GCAACCGAAGCACCTGGAGCAACCGGAGCAGGTCCGCCATCGTCTACGAC
CACCATAGAATCCTTTGGTCCTGCCGGAGGATTCTCTGCTTGCGATTTCT
TCACGACTGGCTTTTTGGCCTCCACCTCAGCAGCCGGCGCACTCTGCTCC
GCAATTACCACCGTCTTTTGGGGCGTCTGGGTGGCTGCGTCACAGGATTG
CTGGTGGAAGAACAGCAGCAGCAGTGCTGCAGCCACTAAGCAGAAGCAGC
GACAGGACATGTCGACTGATAACT
BS16877.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:29:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12159-PB | 594 | CG12159-RB | 1..594 | 610..17 | 2970 | 100 | Minus |
CG12159-PA | 609 | CG12159-RA | 1..579 | 610..32 | 2895 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:13:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12159-RB | 861 | CG12159-RB | 127..720 | 610..17 | 2970 | 100 | Minus |
CG12159-RA | 889 | CG12159-RA | 127..705 | 610..32 | 2895 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:13:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7915900..7916352 | 158..610 | 2265 | 100 | Plus |
2R | 25286936 | 2R | 7915395..7915523 | 32..160 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 21:13:56 has no hits.
BS16877.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:29:23 Download gff for
BS16877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12159-PB | 1..594 | 17..610 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:30:49 Download gff for
BS16877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12159-RB | 127..720 | 17..610 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:56:12 Download gff for
BS16877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12159-RB | 127..720 | 17..610 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:56:12 Download gff for
BS16877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7915395..7915521 | 32..158 | 100 | <- | Plus |
2R | 7915901..7916352 | 159..610 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:30:49 Download gff for
BS16877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3802900..3803026 | 32..158 | 100 | <- | Plus |
arm_2R | 3803406..3803857 | 159..610 | 100 | | Plus |
BS16877.5prime Sequence
624 bp (624 high quality bases) assembled on 2007-05-15
> BS16877.5prime
GAAGTTATCAGTCGACATGTCCTGTCGCTGCTTCTGCTTAGTGGCTGCAG
CACTGCTGCTGCTGTTCTTCCACCAGCAATCCTGTGACGCAGCCACCCAG
ACGCCCCAAAAGACGGTGGTAATTGCGGAGCAGAGTGCGCCGGCTGCTGA
GGTGGAGGCCAAAAAGCCAGTCGTGAAGAAATCGCAAGCAGAGAATCCTC
CGGCAGGACCAAAGGATTCTATGGTGGTCGTAGACGATGGCGGACCTGCT
CCGGTTGCTCCAGGTGCTTCGGTTGCCACACAAGTTTCACCAGGAGATGC
CAAGGCACCGGAAATGGTGCAGCCTCCGGGAGGTCTTCCCGTGGATGATG
TTCATGTTGAACGCTCTCCCATGTCCCCCGATGTGGACTTTCCGGGCCAG
GCTGTTGTCTACATCCTCGTGGGAATCACCAGTACTGCAATACTGCTGCT
TATTATGAGGGTTTATAGGCTCCGACTTTCCCGGGCGGAGCGCAAGTACG
GCGTGCAGGGCGACCGCGCCAACCAGGAGCTGACACCACTGCCCATGGCC
ATCGAGGACGTGAATAGTGACGAAGAGGACCACACCCTGTTCGAGTTGGT
TCAGGTTTAAAAGCTTTCTAGACC
BS16877.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:23:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12159-PB | 594 | CG12159-RB | 1..594 | 17..610 | 2970 | 100 | Plus |
CG12159-PA | 609 | CG12159-RA | 1..579 | 17..595 | 2895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:04:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12159-RB | 861 | CG12159-RB | 127..720 | 17..610 | 2970 | 100 | Plus |
CG12159-RA | 889 | CG12159-RA | 127..705 | 17..595 | 2895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:04:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7915900..7916352 | 469..17 | 2265 | 100 | Minus |
2R | 25286936 | 2R | 7915395..7915523 | 595..467 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:04:27 has no hits.
BS16877.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:23:18 Download gff for
BS16877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12159-PB | 1..594 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:29:14 Download gff for
BS16877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12159-RB | 127..720 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:58:15 Download gff for
BS16877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12159-RB | 127..720 | 17..610 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:58:15 Download gff for
BS16877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7915395..7915521 | 469..595 | 100 | <- | Minus |
2R | 7915901..7916352 | 17..468 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:29:14 Download gff for
BS16877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3802900..3803026 | 469..595 | 100 | <- | Minus |
arm_2R | 3803406..3803857 | 17..468 | 100 | | Minus |
BS16877.complete Sequence
626 bp assembled on 2007-05-07
GenBank Submission: FJ638205
> BS16877.complete
GAAGTTATCAGTCGACATGTCCTGTCGCTGCTTCTGCTTAGTGGCTGCAG
CACTGCTGCTGCTGTTCTTCCACCAGCAATCCTGTGACGCAGCCACCCAG
ACGCCCCAAAAGACGGTGGTAATTGCGGAGCAGAGTGCGCCGGCTGCTGA
GGTGGAGGCCAAAAAGCCAGTCGTGAAGAAATCGCAAGCAGAGAATCCTC
CGGCAGGACCAAAGGATTCTATGGTGGTCGTAGACGATGGCGGACCTGCT
CCGGTTGCTCCAGGTGCTTCGGTTGCCACACAAGTTTCACCAGGAGATGC
CAAGGCACCGGAAATGGTGCAGCCTCCGGGAGGTCTTCCCGTGGATGATG
TTCATGTTGAACGCTCTCCCATGTCCCCCGATGTGGACTTTCCGGGCCAG
GCTGTTGTCTACATCCTCGTGGGAATCACCAGTACTGCAATACTGCTGCT
TATTATGAGGGTTTATAGGCTCCGACTTTCCCGGGCGGAGCGCAAGTACG
GCGTGCAGGGCGACCGCGCCAACCAGGAGCTGACACCACTGCCCATGGCC
ATCGAGGACGTGAATAGTGACGAAGAGGACCACACCCTGTTCGAGTTGGT
TCAGGTTTAAAAGCTTTCTAGACCAT
BS16877.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:48:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12159-RB | 594 | CG12159-PB | 1..594 | 17..610 | 2970 | 100 | Plus |
CG12159-RA | 609 | CG12159-PA | 1..579 | 17..595 | 2895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:48:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12159-RB | 861 | CG12159-RB | 127..720 | 17..610 | 2970 | 100 | Plus |
CG12159-RA | 889 | CG12159-RA | 127..705 | 17..595 | 2895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:48:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7915900..7916352 | 469..17 | 2265 | 100 | Minus |
2R | 25286936 | 2R | 7915395..7915523 | 595..467 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:48:30 has no hits.
BS16877.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:38 Download gff for
BS16877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12159-RB | 1..594 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:23 Download gff for
BS16877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12159-RB | 112..705 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:53 Download gff for
BS16877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12159-RB | 127..718 | 17..608 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:39 Download gff for
BS16877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12159-RB | 112..705 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:54 Download gff for
BS16877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12159-RB | 127..718 | 17..608 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:54 Download gff for
BS16877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7915395..7915521 | 469..595 | 100 | <- | Minus |
2R | 7915901..7916352 | 17..468 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:53 Download gff for
BS16877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3802900..3803026 | 469..595 | 100 | <- | Minus |
arm_2R | 3803406..3803857 | 17..468 | 100 | | Minus |
BS16877.pep Sequence
Translation from 16 to 609
> BS16877.pep
MSCRCFCLVAAALLLLFFHQQSCDAATQTPQKTVVIAEQSAPAAEVEAKK
PVVKKSQAENPPAGPKDSMVVVDDGGPAPVAPGASVATQVSPGDAKAPEM
VQPPGGLPVDDVHVERSPMSPDVDFPGQAVVYILVGITSTAILLLIMRVY
RLRLSRAERKYGVQGDRANQELTPLPMAIEDVNSDEEDHTLFELVQV*
BS16877.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12159-PB | 197 | CG12159-PB | 1..197 | 1..197 | 1004 | 100 | Plus |
CG12159-PA | 202 | CG12159-PA | 1..194 | 1..194 | 988 | 99.5 | Plus |