Clone BS16877 Report

Search the DGRC for BS16877

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:168
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG12159-RB
Protein status:BS16877.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16877.3prime Sequence

624 bp (624 high quality bases) assembled on 2007-05-15

> BS16877.3prime
ATGGTCTAGAAAGCTTTTAAACCTGAACCAACTCGAACAGGGTGTGGTCC
TCTTCGTCACTATTCACGTCCTCGATGGCCATGGGCAGTGGTGTCAGCTC
CTGGTTGGCGCGGTCGCCCTGCACGCCGTACTTGCGCTCCGCCCGGGAAA
GTCGGAGCCTATAAACCCTCATAATAAGCAGCAGTATTGCAGTACTGGTG
ATTCCCACGAGGATGTAGACAACAGCCTGGCCCGGAAAGTCCACATCGGG
GGACATGGGAGAGCGTTCAACATGAACATCATCCACGGGAAGACCTCCCG
GAGGCTGCACCATTTCCGGTGCCTTGGCATCTCCTGGTGAAACTTGTGTG
GCAACCGAAGCACCTGGAGCAACCGGAGCAGGTCCGCCATCGTCTACGAC
CACCATAGAATCCTTTGGTCCTGCCGGAGGATTCTCTGCTTGCGATTTCT
TCACGACTGGCTTTTTGGCCTCCACCTCAGCAGCCGGCGCACTCTGCTCC
GCAATTACCACCGTCTTTTGGGGCGTCTGGGTGGCTGCGTCACAGGATTG
CTGGTGGAAGAACAGCAGCAGCAGTGCTGCAGCCACTAAGCAGAAGCAGC
GACAGGACATGTCGACTGATAACT

BS16877.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:29:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12159-PB 594 CG12159-RB 1..594 610..17 2970 100 Minus
CG12159-PA 609 CG12159-RA 1..579 610..32 2895 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12159-RB 861 CG12159-RB 127..720 610..17 2970 100 Minus
CG12159-RA 889 CG12159-RA 127..705 610..32 2895 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:13:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7915900..7916352 158..610 2265 100 Plus
2R 25286936 2R 7915395..7915523 32..160 645 100 Plus
Blast to na_te.dros performed on 2015-02-04 21:13:56 has no hits.

BS16877.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:29:23 Download gff for BS16877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12159-PB 1..594 17..610 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:30:49 Download gff for BS16877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12159-RB 127..720 17..610 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:56:12 Download gff for BS16877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12159-RB 127..720 17..610 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:56:12 Download gff for BS16877.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7915395..7915521 32..158 100 <- Plus
2R 7915901..7916352 159..610 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:30:49 Download gff for BS16877.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3802900..3803026 32..158 100 <- Plus
arm_2R 3803406..3803857 159..610 100   Plus

BS16877.5prime Sequence

624 bp (624 high quality bases) assembled on 2007-05-15

> BS16877.5prime
GAAGTTATCAGTCGACATGTCCTGTCGCTGCTTCTGCTTAGTGGCTGCAG
CACTGCTGCTGCTGTTCTTCCACCAGCAATCCTGTGACGCAGCCACCCAG
ACGCCCCAAAAGACGGTGGTAATTGCGGAGCAGAGTGCGCCGGCTGCTGA
GGTGGAGGCCAAAAAGCCAGTCGTGAAGAAATCGCAAGCAGAGAATCCTC
CGGCAGGACCAAAGGATTCTATGGTGGTCGTAGACGATGGCGGACCTGCT
CCGGTTGCTCCAGGTGCTTCGGTTGCCACACAAGTTTCACCAGGAGATGC
CAAGGCACCGGAAATGGTGCAGCCTCCGGGAGGTCTTCCCGTGGATGATG
TTCATGTTGAACGCTCTCCCATGTCCCCCGATGTGGACTTTCCGGGCCAG
GCTGTTGTCTACATCCTCGTGGGAATCACCAGTACTGCAATACTGCTGCT
TATTATGAGGGTTTATAGGCTCCGACTTTCCCGGGCGGAGCGCAAGTACG
GCGTGCAGGGCGACCGCGCCAACCAGGAGCTGACACCACTGCCCATGGCC
ATCGAGGACGTGAATAGTGACGAAGAGGACCACACCCTGTTCGAGTTGGT
TCAGGTTTAAAAGCTTTCTAGACC

BS16877.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:23:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG12159-PB 594 CG12159-RB 1..594 17..610 2970 100 Plus
CG12159-PA 609 CG12159-RA 1..579 17..595 2895 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12159-RB 861 CG12159-RB 127..720 17..610 2970 100 Plus
CG12159-RA 889 CG12159-RA 127..705 17..595 2895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7915900..7916352 469..17 2265 100 Minus
2R 25286936 2R 7915395..7915523 595..467 645 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:04:27 has no hits.

BS16877.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:23:18 Download gff for BS16877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12159-PB 1..594 17..610 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:29:14 Download gff for BS16877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12159-RB 127..720 17..610 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:58:15 Download gff for BS16877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12159-RB 127..720 17..610 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:58:15 Download gff for BS16877.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7915395..7915521 469..595 100 <- Minus
2R 7915901..7916352 17..468 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:29:14 Download gff for BS16877.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3802900..3803026 469..595 100 <- Minus
arm_2R 3803406..3803857 17..468 100   Minus

BS16877.complete Sequence

626 bp assembled on 2007-05-07

GenBank Submission: FJ638205

> BS16877.complete
GAAGTTATCAGTCGACATGTCCTGTCGCTGCTTCTGCTTAGTGGCTGCAG
CACTGCTGCTGCTGTTCTTCCACCAGCAATCCTGTGACGCAGCCACCCAG
ACGCCCCAAAAGACGGTGGTAATTGCGGAGCAGAGTGCGCCGGCTGCTGA
GGTGGAGGCCAAAAAGCCAGTCGTGAAGAAATCGCAAGCAGAGAATCCTC
CGGCAGGACCAAAGGATTCTATGGTGGTCGTAGACGATGGCGGACCTGCT
CCGGTTGCTCCAGGTGCTTCGGTTGCCACACAAGTTTCACCAGGAGATGC
CAAGGCACCGGAAATGGTGCAGCCTCCGGGAGGTCTTCCCGTGGATGATG
TTCATGTTGAACGCTCTCCCATGTCCCCCGATGTGGACTTTCCGGGCCAG
GCTGTTGTCTACATCCTCGTGGGAATCACCAGTACTGCAATACTGCTGCT
TATTATGAGGGTTTATAGGCTCCGACTTTCCCGGGCGGAGCGCAAGTACG
GCGTGCAGGGCGACCGCGCCAACCAGGAGCTGACACCACTGCCCATGGCC
ATCGAGGACGTGAATAGTGACGAAGAGGACCACACCCTGTTCGAGTTGGT
TCAGGTTTAAAAGCTTTCTAGACCAT

BS16877.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12159-RB 594 CG12159-PB 1..594 17..610 2970 100 Plus
CG12159-RA 609 CG12159-PA 1..579 17..595 2895 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12159-RB 861 CG12159-RB 127..720 17..610 2970 100 Plus
CG12159-RA 889 CG12159-RA 127..705 17..595 2895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:48:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7915900..7916352 469..17 2265 100 Minus
2R 25286936 2R 7915395..7915523 595..467 645 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:48:30 has no hits.

BS16877.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:38 Download gff for BS16877.complete
Subject Subject Range Query Range Percent Splice Strand
CG12159-RB 1..594 17..610 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:23 Download gff for BS16877.complete
Subject Subject Range Query Range Percent Splice Strand
CG12159-RB 112..705 17..610 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:53 Download gff for BS16877.complete
Subject Subject Range Query Range Percent Splice Strand
CG12159-RB 127..718 17..608 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:39 Download gff for BS16877.complete
Subject Subject Range Query Range Percent Splice Strand
CG12159-RB 112..705 17..610 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:54 Download gff for BS16877.complete
Subject Subject Range Query Range Percent Splice Strand
CG12159-RB 127..718 17..608 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:54 Download gff for BS16877.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7915395..7915521 469..595 100 <- Minus
2R 7915901..7916352 17..468 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:53 Download gff for BS16877.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3802900..3803026 469..595 100 <- Minus
arm_2R 3803406..3803857 17..468 100   Minus

BS16877.pep Sequence

Translation from 16 to 609

> BS16877.pep
MSCRCFCLVAAALLLLFFHQQSCDAATQTPQKTVVIAEQSAPAAEVEAKK
PVVKKSQAENPPAGPKDSMVVVDDGGPAPVAPGASVATQVSPGDAKAPEM
VQPPGGLPVDDVHVERSPMSPDVDFPGQAVVYILVGITSTAILLLIMRVY
RLRLSRAERKYGVQGDRANQELTPLPMAIEDVNSDEEDHTLFELVQV*

BS16877.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12159-PB 197 CG12159-PB 1..197 1..197 1004 100 Plus
CG12159-PA 202 CG12159-PA 1..194 1..194 988 99.5 Plus