Clone BS16878 Report

Search the DGRC for BS16878

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:168
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG4630-RA
Protein status:BS16878.pep: full length peptide match
Sequenced Size:1724

Clone Sequence Records

BS16878.complete Sequence

1724 bp assembled on 2009-12-07

GenBank Submission: KX800172

> BS16878.complete
GAAGTTATCAGTCGACATGTCAGCTCCAGCGGCAGGTGCGGCGTCTGCCG
TCCTGGACTTTGACGACATCCTGGTCGAGATCGGAGAATTCGGACGCTTT
CAGCGGCGGAACTATCTGCTCATATGCTTGCCCGTACTTTTTGCTGCCGC
CAATAGCCTGTCGTATGTTTTCACGGCAGGATCGCCGACCTATCGATGCT
ACGTGCCCGAGTGCGATAAGCTGGTTGATGCGGAATATGGAGCGAATTGG
GTGTCGATTGCCGTGCCCGGAAGCTGGAGCAAGCGGGGCCATTTTACGCC
GTCCACCTGCGAAAGGTTCGTGGCGAACGGTGACCATCTTGAGTCCTCAT
CGGATCCTTGGAGTGCGTGGCCTTTGGATCAGTGCTTTGCTGAGAATTTC
ACGACGGAAACGGAGCGATGCAATCAGTTTGTGTACGGCAGTTCGGAACG
GACCATTGTGCAGCAGTGGGGACTACAATGCCCCGAGAATCTCTGGAAGC
TGGCATTCGTGGGCACTATACACTTTGCTGGTCTGGTTGTGGGAACAGCT
CTATCCGGCTACCTCGCCGATCGATATGGACGCAAGCACATTTTCCTCTT
CTGCATCGTGTTCATGGCGTTGACGGGAGTGGCGCAGGCGCTGTCCTGGG
ACTACATAAGTTTCCTGTTCTTTGCCTTGCTGAATGCAGTGGGCACTTCC
GGTGTCTATCCGCTGGCTTTCATCATTGGGGTGGAAATGGTCGGGCCGCG
GAAACGCGAAATGTCCTCCATTGTGCTCAACTACTTCTATGCCGTGGGCG
AGGCACTCCTGGGCCTGTCCGTTTTCCTGCCCGACTGGCGGCAATTGCAA
CTGGCGCTCTCTGTACCGCCGCTCATCTGCGTGGCCTACTTTTGGCTGGT
ACCGGAGTCCGTCCGGTGGCTGCTGGCTCGTAACCGGCGGGAGCAAGCGG
GAGTCATCATCCGGCGGGCCGCAAAGGTTAACAGGCGAGACATCTCCGTC
GAGCTGATGGCCAGCTTCAAGCAACAGGAGCTTGATGCAGAAACGGGCCA
AGAGGATGATGTCGAGGGTGGCCTGCACGTAAAGAAGGATGACAAGATCT
GGTTGGCCGTCAAGGAGGTGGCGCGCTCTCACATTTTGATGGGCAGATAC
GCCATATTGCTGCTGATTTGGGCCGTCAATGCCATCGTCTACTATGGACT
CTCGCTCAACGCCACCAGTTTGAGTGGCAACAAGTACCTAAACTTCGCCC
TGGTTTGCCTCGTAGAGATACCCGGCTACAGCCTCGCATGGCTGTTCCTG
CGGAGATTTGGACGACGTGTGGCACTTTCTGGCTCCTTGCTGCTCTGCTC
TATCACGTGTGTGGCCAGCGGATTCGTTACACTAGGTGCCAACTGGCTGG
TTGTGACGCTCTTTCTGGTCGGAAAACTGGGCATCACCTCCTCCTTTGCA
GTCATCTACACGTTCACAGCGGAAATGATGCCCACGGTCATTAGGAGCGG
CGGCGTTGGTGTGATGTCCACATTTGCCCGCTTCGGTGCAATGCTGGCTC
CATTTGTGCCCCTATTGGCTTCGTACTATGACCCACTACCTCTGCTACTT
TTCGGGACACTATCGCTCGTGGCTGGACTCCTCTCGCTGTTACTGCCGGA
AACCTTCAACCGAAAACTACCGGATACGGTGGAAGAGGCGATTGCATTGG
GAAAGTGAAAGCTTTCTAGACCAT

BS16878.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG4630-RA 1692 CG4630-PA 1..1692 17..1708 8460 100 Plus
CG4630-RB 1749 CG4630-PB 1..1369 17..1385 6845 100 Plus
CG4630-RB 1749 CG4630-PB 1427..1749 1386..1708 1615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4630-RA 2121 CG4630-RA 319..2010 17..1708 8460 100 Plus
CG4630-RB 2074 CG4630-RB 215..1583 17..1385 6845 100 Plus
CG4630-RB 2074 CG4630-RB 1641..1963 1386..1708 1615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13216761..13217479 1291..573 3595 100 Minus
2R 25286936 2R 13217589..13218145 573..17 2785 100 Minus
2R 25286936 2R 13215855..13215967 1679..1567 565 100 Minus
2R 25286936 2R 13216157..13216263 1488..1382 535 100 Minus
2R 25286936 2R 13216602..13216698 1387..1291 485 100 Minus
2R 25286936 2R 13216022..13216104 1568..1486 415 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:41:22 has no hits.

BS16878.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:17 Download gff for BS16878.complete
Subject Subject Range Query Range Percent Splice Strand
CG4630-RA 1..1692 17..1708 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:31 Download gff for BS16878.complete
Subject Subject Range Query Range Percent Splice Strand
CG4630-RA 319..2009 17..1707 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:54:48 Download gff for BS16878.complete
Subject Subject Range Query Range Percent Splice Strand
CG4630-RA 319..2009 17..1707 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:25 Download gff for BS16878.complete
Subject Subject Range Query Range Percent Splice Strand
CG4630-RA 319..2009 17..1707 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:34 Download gff for BS16878.complete
Subject Subject Range Query Range Percent Splice Strand
CG4630-RA 319..2009 17..1707 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:34 Download gff for BS16878.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13215771..13215799 1679..1707 100 <- Minus
2R 13215856..13215966 1568..1678 100 <- Minus
2R 13216023..13216103 1487..1567 100 <- Minus
2R 13216159..13216259 1386..1486 100 <- Minus
2R 13216604..13216697 1292..1385 100 <- Minus
2R 13216761..13217478 574..1291 100 <- Minus
2R 13217589..13218145 17..573 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:54:48 Download gff for BS16878.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9103276..9103304 1679..1707 100 <- Minus
arm_2R 9103361..9103471 1568..1678 100 <- Minus
arm_2R 9103528..9103608 1487..1567 100 <- Minus
arm_2R 9103664..9103764 1386..1486 100 <- Minus
arm_2R 9104109..9104202 1292..1385 100 <- Minus
arm_2R 9104266..9104983 574..1291 100 <- Minus
arm_2R 9105094..9105650 17..573 100   Minus

BS16878.3prime Sequence

912 bp (793 high quality bases) assembled on 2007-05-15

> BS16878.3prime
ATGGTCTAGAAAGCTTTCACTTTCCCAATGCAATCGCCTCTTCCACCGTA
TCCGGTAGTTTTCGGTTGAAGGTTTCCGGCAGTAACAGCGAGAGGAGTCC
AGCCACGAGCGATAGTGTCCCGAAAAGTAGCAGAGGTAGTGGGTCATAGT
ACGAAGCCAATAGGGGCACAAATGGAGCCAGCATTGCACCGAAGCGGGCA
AATGTGGACATCACACCAACGCCGCCGCTCCTAATGACCGTGGGCATCAT
TTCCGCTGTGAACGTGTAGATGACTGCAAAGGAGGAGGTGATGCCCAGTT
TTCCGACCAGAAAGAGCGTCACAACCAGCCAGTTGGCACCTAGTGTAACG
AATCCGCTGGCCACACACGTGATAGAGCAGAGCAGCAAGGAGCCAGAAAG
TGCCACACGTCGTCCAAATCTCCGCAGGAACAGCCATGCGAGGCTGTAGC
CGGGTATCTCTACGAGGCAAACCAGGGCGAAGTTTAGGTACTTGTTGCCA
CTCAAACTGGTGGCGTTGAGCGAGAGTCCATAGTAGACGATGGCATTGAC
GGCCCAAATCAGCAGCAATATGGCGTATCTGCCCATCAAAATGTGAGAGC
GCGCCACCTCCTTGACGGCCAACCAGATCTTGTCATCCTTCTTTACGTGC
AGGCCACCCTCGACATCATCCTCTTGGCCCGTTTCTGCATCAAGCTCCTG
TTGCTTGAAGCTGGCCATCAGCTCGACGGAGATGTCTCGCCTGTTAACCT
TTGCGGCCCGCCGGATGATGACTCCCGCTTGCTCCCGCCGGTTACGAGCC
AGCAGCCACCGGACGGACTCCGGTACCAGCCAAAAGTANGCCACGCAGAT
GAGCGGCGGTACAGAGAGCGCCAGTTGCAATTGCCGCCAGTCGGGCAGGA
AAACGGACAGGC

BS16878.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4630-PA 1692 CG4630-RA 797..1692 912..17 4461 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG4630-RA 2121 CG4630-RA 1115..2010 912..17 4469 99.9 Minus
CG4630-RB 2074 CG4630-RB 1011..1583 912..340 2854 99.8 Minus
CG4630-RB 2074 CG4630-RB 1641..1963 339..17 1615 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13216761..13217239 434..912 2384 99.8 Plus
2R 25286936 2R 13215855..13215967 46..158 565 100 Plus
2R 25286936 2R 13216157..13216263 237..343 535 100 Plus
2R 25286936 2R 13216602..13216698 338..434 485 100 Plus
2R 25286936 2R 13216022..13216104 157..239 415 100 Plus
Blast to na_te.dros performed on 2015-02-12 23:40:16 has no hits.

BS16878.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:29:32 Download gff for BS16878.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4630-PA 797..1692 17..912 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:49:40 Download gff for BS16878.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4630-RA 1115..2018 8..912 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:14:04 Download gff for BS16878.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4630-RA 1115..2018 8..912 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:14:04 Download gff for BS16878.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13215856..13215966 47..157 100 <- Plus
2R 13216023..13216103 158..238 100 <- Plus
2R 13216159..13216259 239..339 100 <- Plus
2R 13216604..13216697 340..433 100 <- Plus
2R 13216761..13217239 434..912 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:49:40 Download gff for BS16878.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9103361..9103471 47..157 100 <- Plus
arm_2R 9103528..9103608 158..238 100 <- Plus
arm_2R 9103664..9103764 239..339 100 <- Plus
arm_2R 9104109..9104202 340..433 100 <- Plus
arm_2R 9104266..9104744 434..912 99   Plus

BS16878.5prime Sequence

862 bp (731 high quality bases) assembled on 2007-05-15

> BS16878.5prime
GAAGTTATCAGTCGACATGTCAGCTCCAGCGGCAGGTGCGGCGTCTGCCG
TCCTGGACTTTGACGACATCCTGGTCGAGATCGGAGAATTCGGACGCTTT
CAGCGGCGGAACTATCTGCTCATATGCTTGCCCGTACTTTTTGCTGCCGC
CAATAGCCTGTCGTATGTTTTCACGGCAGGATCGCCGACCTATCGATGCT
ACGTGCCCGAGTGCGATAAGCTGGTTGATGCGGAATATGGAGCGAATTGG
GTGTCGATTGCCGTGCCCGGAAGCTGGAGCAAGCGGGGCCATTTTACGCC
GTCCACCTGCGAAAGGTTCGTGGCGAACGGTGACCATCTTGAGTCCTCAT
CGGATCCTTGGAGTGCGTGGCCTTTGGATCAGTGCTTTGCTGAGAATTTC
ACGACGGAAACGGAGCGATGCAATCAGTTTGTGTACGGCAGTTCGGAACG
GACCATTGTGCAGCAGTGGGGACTACAATGCCCCGAGAATCTCTGGAAGC
TGGCATTCGTGGGCACTATACACTTTGCTGGTCTGGTTGTGGGAACAGCT
CTATCCGGCTACCTCGCCGATCGATATGGACGCAAGCACATTTTCCTCTT
CTGCATCGTGTTCATGGCGTTGACGGGAGTGGCGCAGGCGCTGTCCTGGG
ACTACATAAGTTTCCTGTTCTTTGCCTTGCTGAATGCAGTGGGCACTTCC
GGTGTCTATCCGCTGGCTTTCATCATTGGGGTGGAAATGGTCGGGCCGCG
GAAACGCGAAATGTCCTCCATTGTGCTCAACTACTTCTATGCCGTGGGCG
AGGCACTCCTGGGCCTGTCCGTTTTCCTGCCCGACTGGCGGCAATTGCAA
CTGGCGCTCTCT

BS16878.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG4630-PA 1692 CG4630-RA 1..846 17..862 4230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4630-RB 2074 CG4630-RB 215..1060 17..862 4230 100 Plus
CG4630-RA 2121 CG4630-RA 319..1164 17..862 4230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13217589..13218145 573..17 2785 100 Minus
2R 25286936 2R 13217190..13217479 862..573 1450 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:52:56 has no hits.

BS16878.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:23:23 Download gff for BS16878.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4630-PA 1..846 17..862 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:10:51 Download gff for BS16878.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4630-RA 314..1164 8..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:39 Download gff for BS16878.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4630-RA 314..1164 8..862 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:39 Download gff for BS16878.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13217190..13217478 574..862 100 <- Minus
2R 13217589..13218150 8..573 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:10:51 Download gff for BS16878.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9104695..9104983 574..862 100 <- Minus
arm_2R 9105094..9105655 8..573 99   Minus

BS16878.pep Sequence

Translation from 16 to 1707

> BS16878.pep
MSAPAAGAASAVLDFDDILVEIGEFGRFQRRNYLLICLPVLFAAANSLSY
VFTAGSPTYRCYVPECDKLVDAEYGANWVSIAVPGSWSKRGHFTPSTCER
FVANGDHLESSSDPWSAWPLDQCFAENFTTETERCNQFVYGSSERTIVQQ
WGLQCPENLWKLAFVGTIHFAGLVVGTALSGYLADRYGRKHIFLFCIVFM
ALTGVAQALSWDYISFLFFALLNAVGTSGVYPLAFIIGVEMVGPRKREMS
SIVLNYFYAVGEALLGLSVFLPDWRQLQLALSVPPLICVAYFWLVPESVR
WLLARNRREQAGVIIRRAAKVNRRDISVELMASFKQQELDAETGQEDDVE
GGLHVKKDDKIWLAVKEVARSHILMGRYAILLLIWAVNAIVYYGLSLNAT
SLSGNKYLNFALVCLVEIPGYSLAWLFLRRFGRRVALSGSLLLCSITCVA
SGFVTLGANWLVVTLFLVGKLGITSSFAVIYTFTAEMMPTVIRSGGVGVM
STFARFGAMLAPFVPLLASYYDPLPLLLFGTLSLVAGLLSLLLPETFNRK
LPDTVEEAIALGK*

BS16878.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:21:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4630-PA 563 CG4630-PA 1..563 1..563 2914 100 Plus
CG4630-PB 582 CG4630-PB 1..582 1..563 2878 96.6 Plus
CG7442-PA 568 CG7442-PA 11..548 4..562 950 39.4 Plus
CG7458-PA 572 CG7458-PA 39..558 16..558 932 38.5 Plus
Orct-PB 548 CG6331-PB 1..523 13..563 881 34.8 Plus