Clone Sequence Records
BS16878.complete Sequence
1724 bp assembled on 2009-12-07
GenBank Submission: KX800172
> BS16878.complete
GAAGTTATCAGTCGACATGTCAGCTCCAGCGGCAGGTGCGGCGTCTGCCG
TCCTGGACTTTGACGACATCCTGGTCGAGATCGGAGAATTCGGACGCTTT
CAGCGGCGGAACTATCTGCTCATATGCTTGCCCGTACTTTTTGCTGCCGC
CAATAGCCTGTCGTATGTTTTCACGGCAGGATCGCCGACCTATCGATGCT
ACGTGCCCGAGTGCGATAAGCTGGTTGATGCGGAATATGGAGCGAATTGG
GTGTCGATTGCCGTGCCCGGAAGCTGGAGCAAGCGGGGCCATTTTACGCC
GTCCACCTGCGAAAGGTTCGTGGCGAACGGTGACCATCTTGAGTCCTCAT
CGGATCCTTGGAGTGCGTGGCCTTTGGATCAGTGCTTTGCTGAGAATTTC
ACGACGGAAACGGAGCGATGCAATCAGTTTGTGTACGGCAGTTCGGAACG
GACCATTGTGCAGCAGTGGGGACTACAATGCCCCGAGAATCTCTGGAAGC
TGGCATTCGTGGGCACTATACACTTTGCTGGTCTGGTTGTGGGAACAGCT
CTATCCGGCTACCTCGCCGATCGATATGGACGCAAGCACATTTTCCTCTT
CTGCATCGTGTTCATGGCGTTGACGGGAGTGGCGCAGGCGCTGTCCTGGG
ACTACATAAGTTTCCTGTTCTTTGCCTTGCTGAATGCAGTGGGCACTTCC
GGTGTCTATCCGCTGGCTTTCATCATTGGGGTGGAAATGGTCGGGCCGCG
GAAACGCGAAATGTCCTCCATTGTGCTCAACTACTTCTATGCCGTGGGCG
AGGCACTCCTGGGCCTGTCCGTTTTCCTGCCCGACTGGCGGCAATTGCAA
CTGGCGCTCTCTGTACCGCCGCTCATCTGCGTGGCCTACTTTTGGCTGGT
ACCGGAGTCCGTCCGGTGGCTGCTGGCTCGTAACCGGCGGGAGCAAGCGG
GAGTCATCATCCGGCGGGCCGCAAAGGTTAACAGGCGAGACATCTCCGTC
GAGCTGATGGCCAGCTTCAAGCAACAGGAGCTTGATGCAGAAACGGGCCA
AGAGGATGATGTCGAGGGTGGCCTGCACGTAAAGAAGGATGACAAGATCT
GGTTGGCCGTCAAGGAGGTGGCGCGCTCTCACATTTTGATGGGCAGATAC
GCCATATTGCTGCTGATTTGGGCCGTCAATGCCATCGTCTACTATGGACT
CTCGCTCAACGCCACCAGTTTGAGTGGCAACAAGTACCTAAACTTCGCCC
TGGTTTGCCTCGTAGAGATACCCGGCTACAGCCTCGCATGGCTGTTCCTG
CGGAGATTTGGACGACGTGTGGCACTTTCTGGCTCCTTGCTGCTCTGCTC
TATCACGTGTGTGGCCAGCGGATTCGTTACACTAGGTGCCAACTGGCTGG
TTGTGACGCTCTTTCTGGTCGGAAAACTGGGCATCACCTCCTCCTTTGCA
GTCATCTACACGTTCACAGCGGAAATGATGCCCACGGTCATTAGGAGCGG
CGGCGTTGGTGTGATGTCCACATTTGCCCGCTTCGGTGCAATGCTGGCTC
CATTTGTGCCCCTATTGGCTTCGTACTATGACCCACTACCTCTGCTACTT
TTCGGGACACTATCGCTCGTGGCTGGACTCCTCTCGCTGTTACTGCCGGA
AACCTTCAACCGAAAACTACCGGATACGGTGGAAGAGGCGATTGCATTGG
GAAAGTGAAAGCTTTCTAGACCAT
BS16878.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:41:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4630-RA | 1692 | CG4630-PA | 1..1692 | 17..1708 | 8460 | 100 | Plus |
CG4630-RB | 1749 | CG4630-PB | 1..1369 | 17..1385 | 6845 | 100 | Plus |
CG4630-RB | 1749 | CG4630-PB | 1427..1749 | 1386..1708 | 1615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4630-RA | 2121 | CG4630-RA | 319..2010 | 17..1708 | 8460 | 100 | Plus |
CG4630-RB | 2074 | CG4630-RB | 215..1583 | 17..1385 | 6845 | 100 | Plus |
CG4630-RB | 2074 | CG4630-RB | 1641..1963 | 1386..1708 | 1615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13216761..13217479 | 1291..573 | 3595 | 100 | Minus |
2R | 25286936 | 2R | 13217589..13218145 | 573..17 | 2785 | 100 | Minus |
2R | 25286936 | 2R | 13215855..13215967 | 1679..1567 | 565 | 100 | Minus |
2R | 25286936 | 2R | 13216157..13216263 | 1488..1382 | 535 | 100 | Minus |
2R | 25286936 | 2R | 13216602..13216698 | 1387..1291 | 485 | 100 | Minus |
2R | 25286936 | 2R | 13216022..13216104 | 1568..1486 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:41:22 has no hits.
BS16878.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:17 Download gff for
BS16878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4630-RA | 1..1692 | 17..1708 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:31 Download gff for
BS16878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4630-RA | 319..2009 | 17..1707 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:54:48 Download gff for
BS16878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4630-RA | 319..2009 | 17..1707 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:25 Download gff for
BS16878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4630-RA | 319..2009 | 17..1707 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:34 Download gff for
BS16878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4630-RA | 319..2009 | 17..1707 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:34 Download gff for
BS16878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13215771..13215799 | 1679..1707 | 100 | <- | Minus |
2R | 13215856..13215966 | 1568..1678 | 100 | <- | Minus |
2R | 13216023..13216103 | 1487..1567 | 100 | <- | Minus |
2R | 13216159..13216259 | 1386..1486 | 100 | <- | Minus |
2R | 13216604..13216697 | 1292..1385 | 100 | <- | Minus |
2R | 13216761..13217478 | 574..1291 | 100 | <- | Minus |
2R | 13217589..13218145 | 17..573 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:54:48 Download gff for
BS16878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9103276..9103304 | 1679..1707 | 100 | <- | Minus |
arm_2R | 9103361..9103471 | 1568..1678 | 100 | <- | Minus |
arm_2R | 9103528..9103608 | 1487..1567 | 100 | <- | Minus |
arm_2R | 9103664..9103764 | 1386..1486 | 100 | <- | Minus |
arm_2R | 9104109..9104202 | 1292..1385 | 100 | <- | Minus |
arm_2R | 9104266..9104983 | 574..1291 | 100 | <- | Minus |
arm_2R | 9105094..9105650 | 17..573 | 100 | | Minus |
BS16878.3prime Sequence
912 bp (793 high quality bases) assembled on 2007-05-15
> BS16878.3prime
ATGGTCTAGAAAGCTTTCACTTTCCCAATGCAATCGCCTCTTCCACCGTA
TCCGGTAGTTTTCGGTTGAAGGTTTCCGGCAGTAACAGCGAGAGGAGTCC
AGCCACGAGCGATAGTGTCCCGAAAAGTAGCAGAGGTAGTGGGTCATAGT
ACGAAGCCAATAGGGGCACAAATGGAGCCAGCATTGCACCGAAGCGGGCA
AATGTGGACATCACACCAACGCCGCCGCTCCTAATGACCGTGGGCATCAT
TTCCGCTGTGAACGTGTAGATGACTGCAAAGGAGGAGGTGATGCCCAGTT
TTCCGACCAGAAAGAGCGTCACAACCAGCCAGTTGGCACCTAGTGTAACG
AATCCGCTGGCCACACACGTGATAGAGCAGAGCAGCAAGGAGCCAGAAAG
TGCCACACGTCGTCCAAATCTCCGCAGGAACAGCCATGCGAGGCTGTAGC
CGGGTATCTCTACGAGGCAAACCAGGGCGAAGTTTAGGTACTTGTTGCCA
CTCAAACTGGTGGCGTTGAGCGAGAGTCCATAGTAGACGATGGCATTGAC
GGCCCAAATCAGCAGCAATATGGCGTATCTGCCCATCAAAATGTGAGAGC
GCGCCACCTCCTTGACGGCCAACCAGATCTTGTCATCCTTCTTTACGTGC
AGGCCACCCTCGACATCATCCTCTTGGCCCGTTTCTGCATCAAGCTCCTG
TTGCTTGAAGCTGGCCATCAGCTCGACGGAGATGTCTCGCCTGTTAACCT
TTGCGGCCCGCCGGATGATGACTCCCGCTTGCTCCCGCCGGTTACGAGCC
AGCAGCCACCGGACGGACTCCGGTACCAGCCAAAAGTANGCCACGCAGAT
GAGCGGCGGTACAGAGAGCGCCAGTTGCAATTGCCGCCAGTCGGGCAGGA
AAACGGACAGGC
BS16878.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:29:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4630-PA | 1692 | CG4630-RA | 797..1692 | 912..17 | 4461 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:40:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4630-RA | 2121 | CG4630-RA | 1115..2010 | 912..17 | 4469 | 99.9 | Minus |
CG4630-RB | 2074 | CG4630-RB | 1011..1583 | 912..340 | 2854 | 99.8 | Minus |
CG4630-RB | 2074 | CG4630-RB | 1641..1963 | 339..17 | 1615 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:40:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13216761..13217239 | 434..912 | 2384 | 99.8 | Plus |
2R | 25286936 | 2R | 13215855..13215967 | 46..158 | 565 | 100 | Plus |
2R | 25286936 | 2R | 13216157..13216263 | 237..343 | 535 | 100 | Plus |
2R | 25286936 | 2R | 13216602..13216698 | 338..434 | 485 | 100 | Plus |
2R | 25286936 | 2R | 13216022..13216104 | 157..239 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:40:16 has no hits.
BS16878.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:29:32 Download gff for
BS16878.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4630-PA | 797..1692 | 17..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:49:40 Download gff for
BS16878.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4630-RA | 1115..2018 | 8..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:14:04 Download gff for
BS16878.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4630-RA | 1115..2018 | 8..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:14:04 Download gff for
BS16878.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13215856..13215966 | 47..157 | 100 | <- | Plus |
2R | 13216023..13216103 | 158..238 | 100 | <- | Plus |
2R | 13216159..13216259 | 239..339 | 100 | <- | Plus |
2R | 13216604..13216697 | 340..433 | 100 | <- | Plus |
2R | 13216761..13217239 | 434..912 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:49:40 Download gff for
BS16878.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9103361..9103471 | 47..157 | 100 | <- | Plus |
arm_2R | 9103528..9103608 | 158..238 | 100 | <- | Plus |
arm_2R | 9103664..9103764 | 239..339 | 100 | <- | Plus |
arm_2R | 9104109..9104202 | 340..433 | 100 | <- | Plus |
arm_2R | 9104266..9104744 | 434..912 | 99 | | Plus |
BS16878.5prime Sequence
862 bp (731 high quality bases) assembled on 2007-05-15
> BS16878.5prime
GAAGTTATCAGTCGACATGTCAGCTCCAGCGGCAGGTGCGGCGTCTGCCG
TCCTGGACTTTGACGACATCCTGGTCGAGATCGGAGAATTCGGACGCTTT
CAGCGGCGGAACTATCTGCTCATATGCTTGCCCGTACTTTTTGCTGCCGC
CAATAGCCTGTCGTATGTTTTCACGGCAGGATCGCCGACCTATCGATGCT
ACGTGCCCGAGTGCGATAAGCTGGTTGATGCGGAATATGGAGCGAATTGG
GTGTCGATTGCCGTGCCCGGAAGCTGGAGCAAGCGGGGCCATTTTACGCC
GTCCACCTGCGAAAGGTTCGTGGCGAACGGTGACCATCTTGAGTCCTCAT
CGGATCCTTGGAGTGCGTGGCCTTTGGATCAGTGCTTTGCTGAGAATTTC
ACGACGGAAACGGAGCGATGCAATCAGTTTGTGTACGGCAGTTCGGAACG
GACCATTGTGCAGCAGTGGGGACTACAATGCCCCGAGAATCTCTGGAAGC
TGGCATTCGTGGGCACTATACACTTTGCTGGTCTGGTTGTGGGAACAGCT
CTATCCGGCTACCTCGCCGATCGATATGGACGCAAGCACATTTTCCTCTT
CTGCATCGTGTTCATGGCGTTGACGGGAGTGGCGCAGGCGCTGTCCTGGG
ACTACATAAGTTTCCTGTTCTTTGCCTTGCTGAATGCAGTGGGCACTTCC
GGTGTCTATCCGCTGGCTTTCATCATTGGGGTGGAAATGGTCGGGCCGCG
GAAACGCGAAATGTCCTCCATTGTGCTCAACTACTTCTATGCCGTGGGCG
AGGCACTCCTGGGCCTGTCCGTTTTCCTGCCCGACTGGCGGCAATTGCAA
CTGGCGCTCTCT
BS16878.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:23:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4630-PA | 1692 | CG4630-RA | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4630-RB | 2074 | CG4630-RB | 215..1060 | 17..862 | 4230 | 100 | Plus |
CG4630-RA | 2121 | CG4630-RA | 319..1164 | 17..862 | 4230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13217589..13218145 | 573..17 | 2785 | 100 | Minus |
2R | 25286936 | 2R | 13217190..13217479 | 862..573 | 1450 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:52:56 has no hits.
BS16878.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:23:23 Download gff for
BS16878.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4630-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:10:51 Download gff for
BS16878.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4630-RA | 314..1164 | 8..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:39 Download gff for
BS16878.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4630-RA | 314..1164 | 8..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:39 Download gff for
BS16878.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13217190..13217478 | 574..862 | 100 | <- | Minus |
2R | 13217589..13218150 | 8..573 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:10:51 Download gff for
BS16878.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9104695..9104983 | 574..862 | 100 | <- | Minus |
arm_2R | 9105094..9105655 | 8..573 | 99 | | Minus |
BS16878.pep Sequence
Translation from 16 to 1707
> BS16878.pep
MSAPAAGAASAVLDFDDILVEIGEFGRFQRRNYLLICLPVLFAAANSLSY
VFTAGSPTYRCYVPECDKLVDAEYGANWVSIAVPGSWSKRGHFTPSTCER
FVANGDHLESSSDPWSAWPLDQCFAENFTTETERCNQFVYGSSERTIVQQ
WGLQCPENLWKLAFVGTIHFAGLVVGTALSGYLADRYGRKHIFLFCIVFM
ALTGVAQALSWDYISFLFFALLNAVGTSGVYPLAFIIGVEMVGPRKREMS
SIVLNYFYAVGEALLGLSVFLPDWRQLQLALSVPPLICVAYFWLVPESVR
WLLARNRREQAGVIIRRAAKVNRRDISVELMASFKQQELDAETGQEDDVE
GGLHVKKDDKIWLAVKEVARSHILMGRYAILLLIWAVNAIVYYGLSLNAT
SLSGNKYLNFALVCLVEIPGYSLAWLFLRRFGRRVALSGSLLLCSITCVA
SGFVTLGANWLVVTLFLVGKLGITSSFAVIYTFTAEMMPTVIRSGGVGVM
STFARFGAMLAPFVPLLASYYDPLPLLLFGTLSLVAGLLSLLLPETFNRK
LPDTVEEAIALGK*
BS16878.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:21:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4630-PA | 563 | CG4630-PA | 1..563 | 1..563 | 2914 | 100 | Plus |
CG4630-PB | 582 | CG4630-PB | 1..582 | 1..563 | 2878 | 96.6 | Plus |
CG7442-PA | 568 | CG7442-PA | 11..548 | 4..562 | 950 | 39.4 | Plus |
CG7458-PA | 572 | CG7458-PA | 39..558 | 16..558 | 932 | 38.5 | Plus |
Orct-PB | 548 | CG6331-PB | 1..523 | 13..563 | 881 | 34.8 | Plus |