Clone Sequence Records
BS16879.complete Sequence
2128 bp assembled on 2009-12-07
GenBank Submission: KX804807
> BS16879.complete
GAAGTTATCAGTCGACATGTACGCCAGACTGCTGCGAAACTTCGGCGCAA
ACGCCAGGTGCTTTGCAACAGAAGCCAGCCCAAAAGTTCGGCCTATCAGC
AAGATCCTTATTTCAAATCGTGGTGAGATCGCATGCAGGGTGATTCGAAC
CGCACGCAAGCTGGGAGTTCGTACCGTGGCCGTGTTCTCGGATCCGGACG
AGAAGAGCATGCACACGCAGTTGGCAGACGAGTCGTACCGCGTGGGGGAA
GCTGCCTCCTCGGCTTCCTATCTTCGCGGTGAACGCATCCTGGACATAGC
CAAGCGTTCGGGCGCCCAGGCCATCCACCCAGGCTACGGCTTCCTCTCCG
AGTCCGTCGAGTTTGCCGAGTTGTGCCAGCGTGAGGGCATCATCTTCATG
GGTCCGCCCAGTTCCGCCATCCGGGACATGGGGATTAAGAGCACCAGCAA
GGCCATAATGGCCGCTGCTGGGGTGCCGATCATCAATGGATACCATGGCG
ATGATCAGTCAGATGAGTGTTTGCAGCGAGAAGCCGACAAAATTGGCTTT
CCCTTGATGATTAAAGCCGTCCGCGGCGGCGGAGGCAAAGGCATGAGAAT
CGCAGAAAAACCGGACGACTTCCTCACCGCTCTGAACTCAGCTCGCACCG
AGTCCGAGAAGTCGTTTGGCGACAGCTCTGTGCTTCTGGAGCGGTACGTC
CGATCTCCACGCCACGTAGAGGTTCAAGTATTTGCGGATCAGTATGGTGA
TGCTGTCTATCTGTGGGAAAGAGATTGCTCCGTGCAAAGACGTCATCAAA
AGATTATTGAAGAGGCGCCAGCTCCAGGTTTGTCGGAAGATTTGCGTCGT
GAGCTGGGCGAGGCTGCTGTTCGTGCAGCGAAAGCTGTGGGCTACGTAGG
AGCTGGCACCGTGGAGTTCATTCTAGACAAAGAAGATCTCTCTTTCCACT
TCATGGAAATGAATACCCGCCTGCAGGTGGAGCATCCTATAACGGAAATG
ATTACGGGCACCGATTTGGTTGAATGGCAGATTCGCATTGCCGCCGGTGA
GCCATTACCCCTGAAGCAATCTGAGATTACGCGGCGTGGCCACGCATTTG
AAGCTCGCATTTATGCAGAAAATCCTCGCGGAGGCTTTCTGCCCGGAGCC
GGACCCCTGCGATATTTGTCTACTCCCCAACCATCAAACAACGTTCGCGT
GGAGACGGGTGTCCGAGAAGGAGATGAGGTGTCTGTGCACTACGACCCCA
TGATTGCCAAGCTAGTCGTTTGGGGCGAAAACCGCACACAAGCGCTTAAC
TCATTGGTTGCCCGCCTGGGTGAATATCATATATCTGGTCTGGACACTAA
CATTAATTTCCTCATCGACCTTGCGTCGCATCCTGAGTTTCAGCTGGCCA
ATGTGCACACTGGCTTTATCGATGAGCAGTTCGATACTCTATTTCCGCCA
ATTATCATCAGTCCGCAGCAAGTCAGCCAAGCTGCTTTGGCGCTAGTCTT
AAACGAGTTGCAGGCAGCCTTTAGGAACGGAAACAAAGATCAGGATCCAT
TTGTTGCCACCCCTAACGCTCGTCTGAATTACTCTTTGGTTCGCAGATAT
GACTTGAAAGCCAATGAGAAGGTCTATTCTGTGGCTGTCAAGTTTGATGG
CGAGGATATGCAAATTCAGGTGGATAATGGCGACTGGCAGGATGCAAAGG
TCGAAAGAGTTCAGGATGGAAGTCGTCTAAAAATTCGTGCCAATATCAAT
AGCAACGTCACCACATATAATGCTAGTATTGATGGCACTAGTGTCTCTTT
GTTTTCGGAAAGTGGCAAGGTCGATTTTGAGGTGGGACAGCCGAAATTCT
TAAGTGCCCAGGGCGATCAATTGGGTGCAGTTGGGTCTCGCATAGTGGCT
CCCATGCCCGGGATTTTAGAGAAGGTGCTGGTAAAGCCCGGTGACAAGGT
CAAGAAGGGCGAAAACTTGGCAGTGCTTATTGCCATGAAAATGGAACACA
TTCTAAAAGCTCCAAAGGACGCCACCATTAAGTCTATTGGAGGAGCCGCG
GGCGATAACGTTGCTAAGGGAGCGGCCGTGATTACATTCGTCGACGAGGA
AGTAGAAAAGTAAAGCTTTCTAGACCAT
BS16879.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:55:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2118-RC | 2097 | CG2118-PC | 1..2097 | 17..2113 | 10485 | 100 | Plus |
| CG2118-RA | 2097 | CG2118-PA | 1..2097 | 17..2113 | 10485 | 100 | Plus |
| CG2118-RD | 1905 | CG2118-PD | 1..1905 | 209..2113 | 9525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:55:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2118-RC | 2920 | CG2118-RC | 290..2386 | 17..2113 | 10485 | 100 | Plus |
| CG2118-RA | 2387 | CG2118-RA | 111..2207 | 17..2113 | 10485 | 100 | Plus |
| CG2118-RB | 2297 | CG2118-RB | 31..2117 | 27..2113 | 10435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:55:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31792705..31793473 | 823..55 | 3845 | 100 | Minus |
| 3R | 32079331 | 3R | 31792144..31792650 | 1330..824 | 2535 | 100 | Minus |
| 3R | 32079331 | 3R | 31791793..31792084 | 1622..1331 | 1460 | 100 | Minus |
| 3R | 32079331 | 3R | 31791550..31791738 | 1810..1622 | 945 | 100 | Minus |
| 3R | 32079331 | 3R | 31791314..31791485 | 1982..1811 | 860 | 100 | Minus |
| 3R | 32079331 | 3R | 31791126..31791257 | 2113..1982 | 660 | 100 | Minus |
| 3R | 32079331 | 3R | 31793575..31793618 | 60..17 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:55:38 has no hits.
BS16879.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:14 Download gff for
BS16879.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RA | 111..2199 | 17..2105 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:01:28 Download gff for
BS16879.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RA | 111..2199 | 17..2105 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:20 Download gff for
BS16879.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RA | 111..2199 | 17..2105 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:58 Download gff for
BS16879.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RA | 111..2199 | 17..2105 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:58 Download gff for
BS16879.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31791134..31791256 | 1983..2105 | 100 | <- | Minus |
| 3R | 31791314..31791485 | 1811..1982 | 100 | <- | Minus |
| 3R | 31791550..31791737 | 1623..1810 | 100 | <- | Minus |
| 3R | 31791793..31792084 | 1331..1622 | 100 | <- | Minus |
| 3R | 31792144..31792650 | 824..1330 | 100 | <- | Minus |
| 3R | 31792705..31793470 | 58..823 | 100 | <- | Minus |
| 3R | 31793578..31793618 | 17..57 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:01:28 Download gff for
BS16879.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27616856..27616978 | 1983..2105 | 100 | <- | Minus |
| arm_3R | 27617036..27617207 | 1811..1982 | 100 | <- | Minus |
| arm_3R | 27617272..27617459 | 1623..1810 | 100 | <- | Minus |
| arm_3R | 27617515..27617806 | 1331..1622 | 100 | <- | Minus |
| arm_3R | 27617866..27618372 | 824..1330 | 100 | <- | Minus |
| arm_3R | 27618427..27619192 | 58..823 | 100 | <- | Minus |
| arm_3R | 27619300..27619340 | 17..57 | 100 | | Minus |
BS16879.3prime Sequence
908 bp (831 high quality bases) assembled on 2007-05-15
> BS16879.3prime
ATGGTCTAGAAAGCTTTACTTTTCTACTTCCTCGTCGACGAATGTAATCA
CGGCCGCTCCCTTAGCAACGTTATCGCCCGCGGCTCCTCCAATAGACTTA
ATGGTGGCGTCCTTTGGAGCTTTTAGAATGTGTTCCATTTTCATGGCAAT
AAGCACTGCCAAGTTTTCGCCCTTCTTGACCTTGTCACCGGGCTTTACCA
GCACCTTCTCTAAAATCCCGGGCATGGGAGCCACTATGCGAGACCCAACT
GCACCCAATTGATCGCCCTGGGCACTTAAGAATTTCGGCTGTCCCACCTC
AAAATCGACCTTGCCACTTTCCGAAAACAAAGAGACACTAGTGCCATCAA
TACTAGCATTATATGTGGTGACGTTGCTATTGATATTGGCACGAATTTTT
AGACGACTTCCATCCTGAACTCTTTCGACCTTTGCATCCTGCCAGTCGCC
ATTATCCACCTGAATTTGCATATCCTCGCCATCAAACTTGACAGCCACAG
AATAGACCTTCTCATTGGCTTTCAAGTCATATCTGCGAACCAAAGAGTAA
TTCAGACGAGCGTTAGGGGTGGCAACAAATGGATCCTGATCTTTGTTTCC
GTTCCTAAAGGCTGCCTGCAACTCGTTTAAGACTAGCGCCAAAGCAGCTT
GGCTGACTTGCTGCGGACTGATGATAATTGGCGGAAATAGAGTATCGAAC
TGCTCATCGATAAAGCCAGTGTGCACATTGGCCAGCTGAAACTCAGGATG
CGACGCAAGGTCGATGAGGAAATTAATGTTAGTGTCCAGACCAGATATAT
GATATTCACCCAGGCGGGGCAACAATGAGTTAAGCGCTTGTGTGCGGTTT
TCGCCCCCAACGACTAGCTTGGGCATCATGGGGTCGTAGTGCACAGACAC
CTCATCTC
BS16879.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:26:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2118-PA | 2097 | CG2118-RA | 1295..2097 | 818..16 | 4015 | 100 | Minus |
| CG2118-PB | 1905 | CG2118-RB | 1103..1905 | 818..16 | 4015 | 100 | Minus |
| CG2118-PA | 2097 | CG2118-RA | 1205..1290 | 908..823 | 355 | 96.5 | Minus |
| CG2118-PB | 1905 | CG2118-RB | 1013..1098 | 908..823 | 355 | 96.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:34:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2118-RD | 2166 | CG2118-RD | 1094..1986 | 908..16 | 4375 | 99.4 | Minus |
| CG2118-RC | 2920 | CG2118-RC | 1494..2386 | 908..16 | 4375 | 99.4 | Minus |
| CG2118-RB | 2297 | CG2118-RB | 1225..2117 | 908..16 | 4375 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:34:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31791793..31792084 | 507..798 | 1460 | 100 | Plus |
| 3R | 32079331 | 3R | 31791550..31791738 | 319..507 | 945 | 100 | Plus |
| 3R | 32079331 | 3R | 31791314..31791485 | 147..318 | 860 | 100 | Plus |
| 3R | 32079331 | 3R | 31791126..31791257 | 16..147 | 660 | 100 | Plus |
| 3R | 32079331 | 3R | 31792144..31792253 | 799..908 | 460 | 94.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:34:16 has no hits.
BS16879.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:26:13 Download gff for
BS16879.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-PB | 1013..1905 | 16..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:50:00 Download gff for
BS16879.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RB | 1225..2117 | 16..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:05:15 Download gff for
BS16879.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RB | 1225..2117 | 16..908 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:05:15 Download gff for
BS16879.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31791550..31791737 | 319..506 | 100 | <- | Plus |
| 3R | 31791126..31791256 | 16..146 | 100 | <- | Plus |
| 3R | 31791314..31791485 | 147..318 | 100 | <- | Plus |
| 3R | 31791793..31792084 | 507..798 | 100 | <- | Plus |
| 3R | 31792144..31792253 | 799..908 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:50:00 Download gff for
BS16879.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27616848..27616978 | 16..146 | 100 | <- | Plus |
| arm_3R | 27617036..27617207 | 147..318 | 100 | <- | Plus |
| arm_3R | 27617272..27617459 | 319..506 | 100 | <- | Plus |
| arm_3R | 27617515..27617806 | 507..798 | 100 | <- | Plus |
| arm_3R | 27617866..27617975 | 799..908 | 95 | | Plus |
BS16879.5prime Sequence
834 bp (764 high quality bases) assembled on 2007-05-15
> BS16879.5prime
GAAGTTATCAGTCGACATGTACGCCAGACTGCTGCGAAACTTCGGCGCAA
ACGCCAGGTGCTTTGCAACAGAAGCCAGCCCAAAAGTTCGGCCTATCAGC
AAGATCCTTATTTCAAATCGTGGTGAGATCGCATGCAGGGTGATTCGAAC
CGCACGCAAGCTGGGAGTTCGTACCGTGGCCGTGTTCTCGGATCCGGACG
AGAAGAGCATGCACACGCAGTTGGCAGACGAGTCGTACCGCGTGGGGGAA
GCTGCCTCCTCGGCTTCCTATCTTCGCGGTGAACGCATCCTGGACATAGC
CAAGCGTTCGGGCGCCCAGGCCATCCACCCAGGCTACGGCTTCCTCTCCG
AGTCCGTCGAGTTTGCCGAGTTGTGCCAGCGTGAGGGCATCATCTTCATG
GGTCCGCCCAGTTCCGCCATCCGGGACATGGGGATTAAGAGCACCAGCAA
GGCCATAATGGCCGCTGCTGGGGTGCCGATCATCAATGGATACCATGGCG
ATGATCAGTCAGATGAGTGTTTGCAGCGAGAAGCCGACAAAATTGGCTTT
CCCTTGATGATTAAAGCCGTCCGCGGCGGCGGAGGCAAAGGCATGAGAAT
CGCAGAAAAACCGGACGACTTCCTCACCGCTCTGAACTCAGCTCGCACCG
AGTCCGAGAAGTCGTTTGGCGACAGCTCTGTGCTTCTGGAGCGGTACGTC
CGATCTCCACGCCACGTAGAGGTTCAAGTATTTGCGGATCAGTATGGTGA
TGCTGTCTATCTGTGGGAAAGAGATTGCTCCGTGCAAAGACGTCATCAAA
AGAATATTGAAGAGGCGCCAGCTCCAGGTTTGTC
BS16879.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:20:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2118-PA | 2097 | CG2118-RA | 1..818 | 17..834 | 4065 | 99.8 | Plus |
| CG2118-PB | 1905 | CG2118-RB | 1..626 | 209..834 | 3105 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2118-RC | 2920 | CG2118-RC | 290..1107 | 17..834 | 4075 | 99.9 | Plus |
| CG2118-RA | 2387 | CG2118-RA | 111..928 | 17..834 | 4075 | 99.9 | Plus |
| CG2118-RB | 2297 | CG2118-RB | 31..838 | 27..834 | 4025 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31792705..31793473 | 823..55 | 3830 | 99.9 | Minus |
| 3R | 32079331 | 3R | 31793575..31793618 | 60..17 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:11:29 has no hits.
BS16879.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:20:33 Download gff for
BS16879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-PA | 1..818 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:32:19 Download gff for
BS16879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RA | 111..928 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:14:37 Download gff for
BS16879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RA | 111..928 | 17..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:14:37 Download gff for
BS16879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31792699..31793470 | 58..829 | 99 | <- | Minus |
| 3R | 31793578..31793618 | 17..57 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:32:19 Download gff for
BS16879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27618421..27619192 | 58..829 | 99 | <- | Minus |
| arm_3R | 27619300..27619340 | 17..57 | 100 | | Minus |
BS16879.pep Sequence
Translation from 16 to 2112
> BS16879.pep
MYARLLRNFGANARCFATEASPKVRPISKILISNRGEIACRVIRTARKLG
VRTVAVFSDPDEKSMHTQLADESYRVGEAASSASYLRGERILDIAKRSGA
QAIHPGYGFLSESVEFAELCQREGIIFMGPPSSAIRDMGIKSTSKAIMAA
AGVPIINGYHGDDQSDECLQREADKIGFPLMIKAVRGGGGKGMRIAEKPD
DFLTALNSARTESEKSFGDSSVLLERYVRSPRHVEVQVFADQYGDAVYLW
ERDCSVQRRHQKIIEEAPAPGLSEDLRRELGEAAVRAAKAVGYVGAGTVE
FILDKEDLSFHFMEMNTRLQVEHPITEMITGTDLVEWQIRIAAGEPLPLK
QSEITRRGHAFEARIYAENPRGGFLPGAGPLRYLSTPQPSNNVRVETGVR
EGDEVSVHYDPMIAKLVVWGENRTQALNSLVARLGEYHISGLDTNINFLI
DLASHPEFQLANVHTGFIDEQFDTLFPPIIISPQQVSQAALALVLNELQA
AFRNGNKDQDPFVATPNARLNYSLVRRYDLKANEKVYSVAVKFDGEDMQI
QVDNGDWQDAKVERVQDGSRLKIRANINSNVTTYNASIDGTSVSLFSESG
KVDFEVGQPKFLSAQGDQLGAVGSRIVAPMPGILEKVLVKPGDKVKKGEN
LAVLIAMKMEHILKAPKDATIKSIGGAAGDNVAKGAAVITFVDEEVEK*
BS16879.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:39:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2118-PC | 698 | CG2118-PC | 1..698 | 1..698 | 3551 | 100 | Plus |
| CG2118-PA | 698 | CG2118-PA | 1..698 | 1..698 | 3551 | 100 | Plus |
| CG2118-PD | 634 | CG2118-PD | 1..634 | 65..698 | 3231 | 100 | Plus |
| CG2118-PB | 634 | CG2118-PB | 1..634 | 65..698 | 3231 | 100 | Plus |
| CG1516-PB | 1181 | CG1516-PB | 37..485 | 25..470 | 877 | 40.2 | Plus |
