Clone BS16880 Report

Search the DGRC for BS16880

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:168
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG10418-RA
Protein status:BS16880.pep: Imported from assembly
Sequenced Size:320

Clone Sequence Records

BS16880.5prime Sequence

318 bp (318 high quality bases) assembled on 2007-05-15

> BS16880.5prime
GAAGTTATCAGTCGACATGCTCTTTTACTCCTTCTTCAAGTCGCTGGTGG
GCAAGGAAGTCGTTGTGGAGTTGAAAAACGACCTCAGCATATGTGGCACC
CTGCACTCGGTGGATCAGTACCTGAACATCAAGCTGACGGATATCAGTGT
CACAGATCCGGACAAGTACCCCCACATGCTGAGCGTCAAGAACTGCTTCA
TCCGTGGCTCCGTGGTGCGATACGTGCAGCTGCCGGGCGACGAGGTGGAC
ACCCAGCTGCTCCAGGATGCGGCGCGAAAGGAGGCTGTTGTGAGCACAAG
ATAAAAGCTTTCTAGACC

BS16880.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10418-PA 288 CG10418-RA 1..288 17..304 1440 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10418-RA 437 CG10418-RA 40..327 17..304 1440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12336907..12337126 85..304 1100 100 Plus
3L 28110227 3L 12336778..12336846 19..87 345 100 Plus
Blast to na_te.dros performed on 2015-02-11 02:23:58 has no hits.

BS16880.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:20:37 Download gff for BS16880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10418-PA 1..288 17..304 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:59:41 Download gff for BS16880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10418-RA 32..327 9..304 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:02:26 Download gff for BS16880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10418-RA 32..327 9..304 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:02:26 Download gff for BS16880.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12336771..12336846 7..87 93 -> Plus
3L 12336910..12337126 88..304 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:59:41 Download gff for BS16880.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12329871..12329946 7..87 93 -> Plus
arm_3L 12330010..12330226 88..304 100   Plus

BS16880.3prime Sequence

318 bp (318 high quality bases) assembled on 2007-05-15

> BS16880.3prime
ATGGTCTAGAAAGCTTTTATCTTGTGCTCACAACAGCCTCCTTTCGCGCC
GCATCCTGGAGCAGCTGGGTGTCCACCTCGTCGCCCGGCAGCTGCACGTA
TCGCACCACGGAGCCACGGATGAAGCAGTTCTTGACGCTCAGCATGTGGG
GGTACTTGTCCGGATCTGTGACACTGATATCCGTCAGCTTGATGTTCAGG
TACTGATCCACCGAGTGCAGGGTGCCACATATGCTGAGGTCGTTTTTCAA
CTCCACAACGACTTCCTTGCCCACCAGCGACTTGAAGAAGGAGTAAAAGA
GCATGTCGACTGATAACT

BS16880.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:26:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG10418-PA 288 CG10418-RA 1..288 304..17 1440 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10418-RA 437 CG10418-RA 40..327 304..17 1440 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12336907..12337126 236..17 1100 100 Minus
3L 28110227 3L 12336778..12336846 302..234 345 100 Minus
Blast to na_te.dros performed on 2015-02-12 23:36:53 has no hits.

BS16880.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:26:23 Download gff for BS16880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10418-PA 1..288 17..304 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:48:26 Download gff for BS16880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10418-RA 32..327 17..312 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:12:58 Download gff for BS16880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10418-RA 32..327 17..312 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:12:58 Download gff for BS16880.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12336771..12336846 234..314 93 -> Minus
3L 12336910..12337126 17..233 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:48:26 Download gff for BS16880.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12329871..12329946 234..314 93 -> Minus
arm_3L 12330010..12330226 17..233 100   Minus

BS16880.complete Sequence

320 bp assembled on 2010-02-09

GenBank Submission: KX803824

> BS16880.complete
GAAGTTATCAGTCGACATGCTCTTTTACTCCTTCTTCAAGTCGCTGGTGG
GCAAGGAAGTCGTTGTGGAGTTGAAAAACGACCTCAGCATATGTGGCACC
CTGCACTCGGTGGATCAGTACCTGAACATCAAGCTGACGGATATCAGTGT
CACAGATCCGGACAAGTACCCCCACATGCTGAGCGTCAAGAACTGCTTCA
TCCGTGGCTCCGTGGTGCGATACGTGCAGCTGCCGGGCGACGAGGTGGAC
ACCCAGCTGCTCCAGGATGCGGCGCGAAAGGAGGCTGTTGTGAGCACAAG
ATAAAAGCTTTCTAGACCAT

BS16880.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:51:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10418-RA 288 CG10418-PA 1..288 17..304 1440 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG10418-RA 437 CG10418-RA 40..327 17..304 1440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12336907..12337126 85..304 1100 100 Plus
3L 28110227 3L 12336778..12336846 19..87 345 100 Plus
Blast to na_te.dros performed on 2014-11-27 12:51:23 has no hits.

BS16880.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:43 Download gff for BS16880.complete
Subject Subject Range Query Range Percent Splice Strand
CG10418-RA 40..325 17..302 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:25:01 Download gff for BS16880.complete
Subject Subject Range Query Range Percent Splice Strand
CG10418-RA 40..325 17..302 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:59:51 Download gff for BS16880.complete
Subject Subject Range Query Range Percent Splice Strand
CG10418-RA 40..325 17..302 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:09 Download gff for BS16880.complete
Subject Subject Range Query Range Percent Splice Strand
CG10418-RA 40..325 17..302 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:09 Download gff for BS16880.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12336777..12336846 17..87 98 -> Plus
3L 12336910..12337124 88..302 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:25:01 Download gff for BS16880.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12329877..12329946 17..87 98 -> Plus
arm_3L 12330010..12330224 88..302 100   Plus

BS16880.pep Sequence

Translation from 90 to 314

> BS16880.pep
MWHPALGGSVPEHQADGYQCHRSGQVPPHAERQELLHPWLRGAIRAAAGR
RGGHPAAPGCGAKGGCCEHKIKAF*
Sequence BS16880.pep has no blast hits.