Clone Sequence Records
BS16880.5prime Sequence
318 bp (318 high quality bases) assembled on 2007-05-15
> BS16880.5prime
GAAGTTATCAGTCGACATGCTCTTTTACTCCTTCTTCAAGTCGCTGGTGG
GCAAGGAAGTCGTTGTGGAGTTGAAAAACGACCTCAGCATATGTGGCACC
CTGCACTCGGTGGATCAGTACCTGAACATCAAGCTGACGGATATCAGTGT
CACAGATCCGGACAAGTACCCCCACATGCTGAGCGTCAAGAACTGCTTCA
TCCGTGGCTCCGTGGTGCGATACGTGCAGCTGCCGGGCGACGAGGTGGAC
ACCCAGCTGCTCCAGGATGCGGCGCGAAAGGAGGCTGTTGTGAGCACAAG
ATAAAAGCTTTCTAGACC
BS16880.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:20:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10418-PA | 288 | CG10418-RA | 1..288 | 17..304 | 1440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:24:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10418-RA | 437 | CG10418-RA | 40..327 | 17..304 | 1440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:23:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12336907..12337126 | 85..304 | 1100 | 100 | Plus |
3L | 28110227 | 3L | 12336778..12336846 | 19..87 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:23:58 has no hits.
BS16880.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:20:37 Download gff for
BS16880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10418-PA | 1..288 | 17..304 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:59:41 Download gff for
BS16880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10418-RA | 32..327 | 9..304 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:02:26 Download gff for
BS16880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10418-RA | 32..327 | 9..304 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:02:26 Download gff for
BS16880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12336771..12336846 | 7..87 | 93 | -> | Plus |
3L | 12336910..12337126 | 88..304 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:59:41 Download gff for
BS16880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12329871..12329946 | 7..87 | 93 | -> | Plus |
arm_3L | 12330010..12330226 | 88..304 | 100 | | Plus |
BS16880.3prime Sequence
318 bp (318 high quality bases) assembled on 2007-05-15
> BS16880.3prime
ATGGTCTAGAAAGCTTTTATCTTGTGCTCACAACAGCCTCCTTTCGCGCC
GCATCCTGGAGCAGCTGGGTGTCCACCTCGTCGCCCGGCAGCTGCACGTA
TCGCACCACGGAGCCACGGATGAAGCAGTTCTTGACGCTCAGCATGTGGG
GGTACTTGTCCGGATCTGTGACACTGATATCCGTCAGCTTGATGTTCAGG
TACTGATCCACCGAGTGCAGGGTGCCACATATGCTGAGGTCGTTTTTCAA
CTCCACAACGACTTCCTTGCCCACCAGCGACTTGAAGAAGGAGTAAAAGA
GCATGTCGACTGATAACT
BS16880.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:26:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10418-PA | 288 | CG10418-RA | 1..288 | 304..17 | 1440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:36:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10418-RA | 437 | CG10418-RA | 40..327 | 304..17 | 1440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:36:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12336907..12337126 | 236..17 | 1100 | 100 | Minus |
3L | 28110227 | 3L | 12336778..12336846 | 302..234 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:36:53 has no hits.
BS16880.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:26:23 Download gff for
BS16880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10418-PA | 1..288 | 17..304 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:48:26 Download gff for
BS16880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10418-RA | 32..327 | 17..312 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:12:58 Download gff for
BS16880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10418-RA | 32..327 | 17..312 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:12:58 Download gff for
BS16880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12336771..12336846 | 234..314 | 93 | -> | Minus |
3L | 12336910..12337126 | 17..233 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:48:26 Download gff for
BS16880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12329871..12329946 | 234..314 | 93 | -> | Minus |
arm_3L | 12330010..12330226 | 17..233 | 100 | | Minus |
BS16880.complete Sequence
320 bp assembled on 2010-02-09
GenBank Submission: KX803824
> BS16880.complete
GAAGTTATCAGTCGACATGCTCTTTTACTCCTTCTTCAAGTCGCTGGTGG
GCAAGGAAGTCGTTGTGGAGTTGAAAAACGACCTCAGCATATGTGGCACC
CTGCACTCGGTGGATCAGTACCTGAACATCAAGCTGACGGATATCAGTGT
CACAGATCCGGACAAGTACCCCCACATGCTGAGCGTCAAGAACTGCTTCA
TCCGTGGCTCCGTGGTGCGATACGTGCAGCTGCCGGGCGACGAGGTGGAC
ACCCAGCTGCTCCAGGATGCGGCGCGAAAGGAGGCTGTTGTGAGCACAAG
ATAAAAGCTTTCTAGACCAT
BS16880.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:51:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10418-RA | 288 | CG10418-PA | 1..288 | 17..304 | 1440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:51:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10418-RA | 437 | CG10418-RA | 40..327 | 17..304 | 1440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:51:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12336907..12337126 | 85..304 | 1100 | 100 | Plus |
3L | 28110227 | 3L | 12336778..12336846 | 19..87 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:51:23 has no hits.
BS16880.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:43 Download gff for
BS16880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10418-RA | 40..325 | 17..302 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:25:01 Download gff for
BS16880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10418-RA | 40..325 | 17..302 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:59:51 Download gff for
BS16880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10418-RA | 40..325 | 17..302 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:09 Download gff for
BS16880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10418-RA | 40..325 | 17..302 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:09 Download gff for
BS16880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12336777..12336846 | 17..87 | 98 | -> | Plus |
3L | 12336910..12337124 | 88..302 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:25:01 Download gff for
BS16880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12329877..12329946 | 17..87 | 98 | -> | Plus |
arm_3L | 12330010..12330224 | 88..302 | 100 | | Plus |
BS16880.pep Sequence
Translation from 90 to 314
> BS16880.pep
MWHPALGGSVPEHQADGYQCHRSGQVPPHAERQELLHPWLRGAIRAAAGR
RGGHPAAPGCGAKGGCCEHKIKAF*
Sequence BS16880.pep has no blast hits.