Clone Sequence Records
BS16885.complete Sequence
803 bp assembled on 2010-02-09
GenBank Submission: KX805469
> BS16885.complete
GAAGTTATCAGTCGACATGTCGTCCAGTGAACGAGTGGCCAAAGTGGTGC
TGGTGGACATCGAGGGCACCACCACTTCGATTAGCTTTGTGCACGATGTC
CTGTTTCCCTACGCCAAGCAGAATGTGGAAAAGTTCCTGAGGGATTCGTG
GGAAGAAGATGATATAAAGCGTATTGTCCAGGATCTACAGCAAGTGCCCC
AGTATGCGGACTACAAGGCCCTGTTAAGTGGTCCACCTACGGAAGTGGAT
GTAGATCTGATTGCAGGCTTTGTGCGCTATTTAATTGATCAGGATCTGAA
GGTCACGCCAATGAAAACGCTGCAGGGCTTGATTTGGGCGCAGGGCTACG
CTAATGGAGAGCTGAAGGGCCATGTATACGAAGACGTCCCTGCAGCTTTT
GAGGCTTGGCGTGCTGCTGGCCTCCAGATTGCAGTCTACTCCAGCGGCAG
TGTGGCTGCCCAAAAGCTGATATTCGGTCATAGTTTGGCCGGGAACCTGC
AGCCGTACTTGAGTGCTTATTTCGACACCCATGTGGGCCACAAACAGGAA
CAGCAGTCCTATAAAAACATTGCCAAGCAATTGAAGGAGGACCCGAAGCA
GATACTCTTTCTCACGGATATTCCAGGAGAAGCGGCCGCCGCTCGCTGTG
CGGGCTTGCAAGCCATAATTCTGAAGCGTCCTGGAAACGCCGCCCTAGCA
GACGATCAAAAAACTGGATTCGAGTTGATTCCGGACTTTAAACCACTTCA
CAACCTGAAAGTTCCGGTCAATAAATCCCAGGCTTAGAAGCTTTCTAGAC
CAT
BS16885.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:28:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12173-RA | 771 | CG12173-PA | 1..771 | 17..787 | 3855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:28:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12173-RA | 867 | CG12173-RA | 79..849 | 17..787 | 3855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:28:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5256248..5256603 | 372..17 | 1780 | 100 | Minus |
3R | 32079331 | 3R | 5255682..5255938 | 629..373 | 1285 | 100 | Minus |
3R | 32079331 | 3R | 5255462..5255621 | 787..628 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:28:42 has no hits.
BS16885.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:33 Download gff for
BS16885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12173-RA | 49..819 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:03 Download gff for
BS16885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12173-RA | 79..849 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:21:15 Download gff for
BS16885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12173-RA | 49..819 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:29:48 Download gff for
BS16885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12173-RA | 79..849 | 17..787 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:29:48 Download gff for
BS16885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5255462..5255619 | 630..787 | 100 | <- | Minus |
3R | 5255682..5255938 | 373..629 | 100 | <- | Minus |
3R | 5256248..5256603 | 17..372 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:03 Download gff for
BS16885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1081184..1081341 | 630..787 | 100 | <- | Minus |
arm_3R | 1081404..1081660 | 373..629 | 100 | <- | Minus |
arm_3R | 1081970..1082325 | 17..372 | 100 | | Minus |
BS16885.3prime Sequence
801 bp (801 high quality bases) assembled on 2007-05-15
> BS16885.3prime
ATGGTCTAGAAAGCTTCTAAGCCTGGGATTTATTGACCGGAACTTTCAGG
TTGTGAAGTGGTTTAAAGTCCGGAATCAACTCGAATCCAGTTTTTTGATC
GTCTGCTAGGGCGGCGTTTCCAGGACGCTTCAGAATTATGGCTTGCAAGC
CCGCACAGCGAGCGGCGGCCGCTTCTCCTGGAATATCCGTGAGAAAGAGT
ATCTGCTTCGGGTCCTCCTTCAATTGCTTGGCAATGTTTTTATAGGACTG
CTGTTCCTGTTTGTGGCCCACATGGGTGTCGAAATAAGCACTCAAGTACG
GCTGCAGGTTCCCGGCCAAACTATGACCGAATATCAGCTTTTGGGCAGCC
ACACTGCCGCTGGAGTAGACTGCAATCTGGAGGCCAGCAGCACGCCAAGC
CTCAAAAGCTGCAGGGACGTCTTCGTATACATGGCCCTTCAGCTCTCCAT
TAGCGTAGCCCTGCGCCCAAATCAAGCCCTGCAGCGTTTTCATTGGCGTG
ACCTTCAGATCCTGATCAATTAAATAGCGCACAAAGCCTGCAATCAGATC
TACATCCACTTCCGTAGGTGGACCACTTAACAGGGCCTTGTAGTCCGCAT
ACTGGGGCACTTGCTGTAGATCCTGGACAATACGCTTTATATCATCTTCT
TCCCACGAATCCCTCAGGAACTTTTCCACATTCTGCTTGGCGTAGGGAAA
CAGGACATCGTGCACAAAGCTAATCGAAGTGGTGGTGCCCTCGATGTCCA
CCAGCACCACTTTGGCCACTCGTTCACTGGACGACATGTCGACTGATAAC
T
BS16885.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:26:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12173-PA | 771 | CG12173-RA | 1..771 | 787..17 | 3855 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12173-RA | 867 | CG12173-RA | 79..849 | 787..17 | 3855 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5256248..5256603 | 432..787 | 1780 | 100 | Plus |
3R | 32079331 | 3R | 5255682..5255938 | 175..431 | 1285 | 100 | Plus |
3R | 32079331 | 3R | 5255462..5255621 | 17..176 | 800 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:16:35 has no hits.
BS16885.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:26:38 Download gff for
BS16885.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12173-PA | 1..771 | 17..787 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:33:22 Download gff for
BS16885.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12173-RA | 70..856 | 9..797 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:27:20 Download gff for
BS16885.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12173-RA | 70..856 | 9..797 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:27:20 Download gff for
BS16885.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5255455..5255619 | 9..174 | 97 | <- | Plus |
3R | 5255682..5255938 | 175..431 | 100 | <- | Plus |
3R | 5256248..5256612 | 432..797 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:33:22 Download gff for
BS16885.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1081177..1081341 | 9..174 | 97 | <- | Plus |
arm_3R | 1081404..1081660 | 175..431 | 100 | <- | Plus |
arm_3R | 1081970..1082334 | 432..797 | 98 | | Plus |
BS16885.5prime Sequence
801 bp (795 high quality bases) assembled on 2007-05-15
> BS16885.5prime
GAAGTTATCAGTCGACATGTCGTCCAGTGAACGAGTGGCCAAAGTGGTGC
TGGTGGACATCGAGGGCACCACCACTTCGATTAGCTTTGTGCACGATGTC
CTGTTTCCCTACGCCAAGCAGAATGTGGAAAAGTTCCTGAGGGATTCGTG
GGAAGAAGATGATATAAAGCGTATTGTCCAGGATCTACAGCAAGTGCCCC
AGTATGCGGACTACAAGGCCCTGTTAAGTGGTCCACCTACGGAAGTGGAT
GTAGATCTGATTGCAGGCTTTGTGCGCTATTTAATTGATCAGGATCTGAA
GGTCACGCCAATGAAAACGCTGCAGGGCTTGATTTGGGCGCAGGGCTACG
CTAATGGAGAGCTGAAGGGCCATGTATACGAAGACGTCCCTGCAGCTTTT
GAGGCTTGGCGTGCTGCTGGCCTCCAGATTGCAGTCTACTCCAGCGGCAG
TGTGGCTGCCCAAAAGCTGATATTCGGTCATAGTTTGGCCGGGAACCTGC
AGCCGTACTTGAGTGCTTATTTCGACACCCATGTGGGCCACAAACAGGAA
CAGCAGTCCTATAAAAACATTGCCAAGCAATTGAAGGAGGACCCGAAGCA
GATACTCTTTCTCACGGATATTCCAGGAGAAGCGGCCGCCGCTCGCTGTG
CGGGCTTGCAAGCCATAATTCTGAAGCGTCCTGGAAACGCCGCCCTAGCA
GACGATCAAAAAACTGGATTCGAGTTGATTCCGGACTTTAAACCACTTCA
CAACCCTGAAGTTCCGGTCAATAAATCCCAGGCTTAGAAGCTTTCTAGAC
C
BS16885.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:20:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12173-PA | 771 | CG12173-RA | 1..739 | 17..755 | 3695 | 100 | Plus |
CG12173-PA | 771 | CG12173-RA | 743..771 | 759..787 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:57:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12173-RA | 867 | CG12173-RA | 79..849 | 17..787 | 3810 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:57:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5256248..5256603 | 372..17 | 1780 | 100 | Minus |
3R | 32079331 | 3R | 5255682..5255938 | 629..373 | 1285 | 100 | Minus |
3R | 32079331 | 3R | 5255462..5255621 | 787..628 | 755 | 98.1 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:57:29 has no hits.
BS16885.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:20:46 Download gff for
BS16885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12173-PA | 1..771 | 17..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:46:48 Download gff for
BS16885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12173-RA | 70..856 | 7..795 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:26 Download gff for
BS16885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12173-RA | 70..856 | 7..795 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:26 Download gff for
BS16885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5255455..5255619 | 630..795 | 96 | <- | Minus |
3R | 5255682..5255938 | 373..629 | 100 | <- | Minus |
3R | 5256248..5256612 | 7..372 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:46:48 Download gff for
BS16885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1081177..1081341 | 630..795 | 96 | <- | Minus |
arm_3R | 1081404..1081660 | 373..629 | 100 | <- | Minus |
arm_3R | 1081970..1082334 | 7..372 | 98 | | Minus |
BS16885.pep Sequence
Translation from 16 to 786
> BS16885.pep
MSSSERVAKVVLVDIEGTTTSISFVHDVLFPYAKQNVEKFLRDSWEEDDI
KRIVQDLQQVPQYADYKALLSGPPTEVDVDLIAGFVRYLIDQDLKVTPMK
TLQGLIWAQGYANGELKGHVYEDVPAAFEAWRAAGLQIAVYSSGSVAAQK
LIFGHSLAGNLQPYLSAYFDTHVGHKQEQQSYKNIAKQLKEDPKQILFLT
DIPGEAAAARCAGLQAIILKRPGNAALADDQKTGFELIPDFKPLHNLKVP
VNKSQA*
BS16885.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12173-PA | 256 | CG12173-PA | 1..256 | 1..256 | 1314 | 100 | Plus |