Clone BS16885 Report

Search the DGRC for BS16885

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:168
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG12173-RA
Protein status:BS16885.pep: full length peptide match
Sequenced Size:803

Clone Sequence Records

BS16885.complete Sequence

803 bp assembled on 2010-02-09

GenBank Submission: KX805469

> BS16885.complete
GAAGTTATCAGTCGACATGTCGTCCAGTGAACGAGTGGCCAAAGTGGTGC
TGGTGGACATCGAGGGCACCACCACTTCGATTAGCTTTGTGCACGATGTC
CTGTTTCCCTACGCCAAGCAGAATGTGGAAAAGTTCCTGAGGGATTCGTG
GGAAGAAGATGATATAAAGCGTATTGTCCAGGATCTACAGCAAGTGCCCC
AGTATGCGGACTACAAGGCCCTGTTAAGTGGTCCACCTACGGAAGTGGAT
GTAGATCTGATTGCAGGCTTTGTGCGCTATTTAATTGATCAGGATCTGAA
GGTCACGCCAATGAAAACGCTGCAGGGCTTGATTTGGGCGCAGGGCTACG
CTAATGGAGAGCTGAAGGGCCATGTATACGAAGACGTCCCTGCAGCTTTT
GAGGCTTGGCGTGCTGCTGGCCTCCAGATTGCAGTCTACTCCAGCGGCAG
TGTGGCTGCCCAAAAGCTGATATTCGGTCATAGTTTGGCCGGGAACCTGC
AGCCGTACTTGAGTGCTTATTTCGACACCCATGTGGGCCACAAACAGGAA
CAGCAGTCCTATAAAAACATTGCCAAGCAATTGAAGGAGGACCCGAAGCA
GATACTCTTTCTCACGGATATTCCAGGAGAAGCGGCCGCCGCTCGCTGTG
CGGGCTTGCAAGCCATAATTCTGAAGCGTCCTGGAAACGCCGCCCTAGCA
GACGATCAAAAAACTGGATTCGAGTTGATTCCGGACTTTAAACCACTTCA
CAACCTGAAAGTTCCGGTCAATAAATCCCAGGCTTAGAAGCTTTCTAGAC
CAT

BS16885.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG12173-RA 771 CG12173-PA 1..771 17..787 3855 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG12173-RA 867 CG12173-RA 79..849 17..787 3855 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5256248..5256603 372..17 1780 100 Minus
3R 32079331 3R 5255682..5255938 629..373 1285 100 Minus
3R 32079331 3R 5255462..5255621 787..628 800 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:28:42 has no hits.

BS16885.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:33 Download gff for BS16885.complete
Subject Subject Range Query Range Percent Splice Strand
CG12173-RA 49..819 17..787 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:03 Download gff for BS16885.complete
Subject Subject Range Query Range Percent Splice Strand
CG12173-RA 79..849 17..787 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:21:15 Download gff for BS16885.complete
Subject Subject Range Query Range Percent Splice Strand
CG12173-RA 49..819 17..787 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:29:48 Download gff for BS16885.complete
Subject Subject Range Query Range Percent Splice Strand
CG12173-RA 79..849 17..787 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:29:48 Download gff for BS16885.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5255462..5255619 630..787 100 <- Minus
3R 5255682..5255938 373..629 100 <- Minus
3R 5256248..5256603 17..372 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:03 Download gff for BS16885.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1081184..1081341 630..787 100 <- Minus
arm_3R 1081404..1081660 373..629 100 <- Minus
arm_3R 1081970..1082325 17..372 100   Minus

BS16885.3prime Sequence

801 bp (801 high quality bases) assembled on 2007-05-15

> BS16885.3prime
ATGGTCTAGAAAGCTTCTAAGCCTGGGATTTATTGACCGGAACTTTCAGG
TTGTGAAGTGGTTTAAAGTCCGGAATCAACTCGAATCCAGTTTTTTGATC
GTCTGCTAGGGCGGCGTTTCCAGGACGCTTCAGAATTATGGCTTGCAAGC
CCGCACAGCGAGCGGCGGCCGCTTCTCCTGGAATATCCGTGAGAAAGAGT
ATCTGCTTCGGGTCCTCCTTCAATTGCTTGGCAATGTTTTTATAGGACTG
CTGTTCCTGTTTGTGGCCCACATGGGTGTCGAAATAAGCACTCAAGTACG
GCTGCAGGTTCCCGGCCAAACTATGACCGAATATCAGCTTTTGGGCAGCC
ACACTGCCGCTGGAGTAGACTGCAATCTGGAGGCCAGCAGCACGCCAAGC
CTCAAAAGCTGCAGGGACGTCTTCGTATACATGGCCCTTCAGCTCTCCAT
TAGCGTAGCCCTGCGCCCAAATCAAGCCCTGCAGCGTTTTCATTGGCGTG
ACCTTCAGATCCTGATCAATTAAATAGCGCACAAAGCCTGCAATCAGATC
TACATCCACTTCCGTAGGTGGACCACTTAACAGGGCCTTGTAGTCCGCAT
ACTGGGGCACTTGCTGTAGATCCTGGACAATACGCTTTATATCATCTTCT
TCCCACGAATCCCTCAGGAACTTTTCCACATTCTGCTTGGCGTAGGGAAA
CAGGACATCGTGCACAAAGCTAATCGAAGTGGTGGTGCCCTCGATGTCCA
CCAGCACCACTTTGGCCACTCGTTCACTGGACGACATGTCGACTGATAAC
T

BS16885.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG12173-PA 771 CG12173-RA 1..771 787..17 3855 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG12173-RA 867 CG12173-RA 79..849 787..17 3855 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5256248..5256603 432..787 1780 100 Plus
3R 32079331 3R 5255682..5255938 175..431 1285 100 Plus
3R 32079331 3R 5255462..5255621 17..176 800 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:16:35 has no hits.

BS16885.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:26:38 Download gff for BS16885.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12173-PA 1..771 17..787 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:33:22 Download gff for BS16885.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12173-RA 70..856 9..797 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:27:20 Download gff for BS16885.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12173-RA 70..856 9..797 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:27:20 Download gff for BS16885.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5255455..5255619 9..174 97 <- Plus
3R 5255682..5255938 175..431 100 <- Plus
3R 5256248..5256612 432..797 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:33:22 Download gff for BS16885.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1081177..1081341 9..174 97 <- Plus
arm_3R 1081404..1081660 175..431 100 <- Plus
arm_3R 1081970..1082334 432..797 98   Plus

BS16885.5prime Sequence

801 bp (795 high quality bases) assembled on 2007-05-15

> BS16885.5prime
GAAGTTATCAGTCGACATGTCGTCCAGTGAACGAGTGGCCAAAGTGGTGC
TGGTGGACATCGAGGGCACCACCACTTCGATTAGCTTTGTGCACGATGTC
CTGTTTCCCTACGCCAAGCAGAATGTGGAAAAGTTCCTGAGGGATTCGTG
GGAAGAAGATGATATAAAGCGTATTGTCCAGGATCTACAGCAAGTGCCCC
AGTATGCGGACTACAAGGCCCTGTTAAGTGGTCCACCTACGGAAGTGGAT
GTAGATCTGATTGCAGGCTTTGTGCGCTATTTAATTGATCAGGATCTGAA
GGTCACGCCAATGAAAACGCTGCAGGGCTTGATTTGGGCGCAGGGCTACG
CTAATGGAGAGCTGAAGGGCCATGTATACGAAGACGTCCCTGCAGCTTTT
GAGGCTTGGCGTGCTGCTGGCCTCCAGATTGCAGTCTACTCCAGCGGCAG
TGTGGCTGCCCAAAAGCTGATATTCGGTCATAGTTTGGCCGGGAACCTGC
AGCCGTACTTGAGTGCTTATTTCGACACCCATGTGGGCCACAAACAGGAA
CAGCAGTCCTATAAAAACATTGCCAAGCAATTGAAGGAGGACCCGAAGCA
GATACTCTTTCTCACGGATATTCCAGGAGAAGCGGCCGCCGCTCGCTGTG
CGGGCTTGCAAGCCATAATTCTGAAGCGTCCTGGAAACGCCGCCCTAGCA
GACGATCAAAAAACTGGATTCGAGTTGATTCCGGACTTTAAACCACTTCA
CAACCCTGAAGTTCCGGTCAATAAATCCCAGGCTTAGAAGCTTTCTAGAC
C

BS16885.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG12173-PA 771 CG12173-RA 1..739 17..755 3695 100 Plus
CG12173-PA 771 CG12173-RA 743..771 759..787 145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG12173-RA 867 CG12173-RA 79..849 17..787 3810 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:57:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5256248..5256603 372..17 1780 100 Minus
3R 32079331 3R 5255682..5255938 629..373 1285 100 Minus
3R 32079331 3R 5255462..5255621 787..628 755 98.1 Minus
Blast to na_te.dros performed on 2015-02-13 05:57:29 has no hits.

BS16885.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:20:46 Download gff for BS16885.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12173-PA 1..771 17..787 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:46:48 Download gff for BS16885.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12173-RA 70..856 7..795 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:26 Download gff for BS16885.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12173-RA 70..856 7..795 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:26 Download gff for BS16885.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5255455..5255619 630..795 96 <- Minus
3R 5255682..5255938 373..629 100 <- Minus
3R 5256248..5256612 7..372 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:46:48 Download gff for BS16885.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1081177..1081341 630..795 96 <- Minus
arm_3R 1081404..1081660 373..629 100 <- Minus
arm_3R 1081970..1082334 7..372 98   Minus

BS16885.pep Sequence

Translation from 16 to 786

> BS16885.pep
MSSSERVAKVVLVDIEGTTTSISFVHDVLFPYAKQNVEKFLRDSWEEDDI
KRIVQDLQQVPQYADYKALLSGPPTEVDVDLIAGFVRYLIDQDLKVTPMK
TLQGLIWAQGYANGELKGHVYEDVPAAFEAWRAAGLQIAVYSSGSVAAQK
LIFGHSLAGNLQPYLSAYFDTHVGHKQEQQSYKNIAKQLKEDPKQILFLT
DIPGEAAAARCAGLQAIILKRPGNAALADDQKTGFELIPDFKPLHNLKVP
VNKSQA*

BS16885.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12173-PA 256 CG12173-PA 1..256 1..256 1314 100 Plus