Clone Sequence Records
BS16888.3prime Sequence
385 bp (322 high quality bases) assembled on 2007-05-15
> BS16888.3prime
ATGGTCTAGAAAGCTTCTATTTCCAGGGCAGGGCCAGCTTTCCGGTTTCA
TGAACGCGGACCAATCTCTCTCCGGGCGTGTAGTACTTGGCTGGCGGCGG
TGGTGGAGCCTTGATGGTGAGGATGCCATCGCTGGATATGTCCGAGATTA
CCTCATTGGCATTGTATCCGCGGGGCAGAAGGTACTTCCTCACAAAGTGC
CGCTCCACCAGGCCATTGGAACCCTCGTCGCGACGATTGTGATTTCCCTG
GACGATGACATAGTCGTCATTGGTTTTGACCACAATGTCGTGGGGATGAA
ATTGTCGCACATCGATGTCAATCCGAAATCCCTTCTCATCCACATGGACA
CGCTCACCGGAATAGTAGTTGTCCCACCTCATTGG
BS16888.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:29:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4461-PA | 603 | CG4461-RA | 235..603 | 385..17 | 1845 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:46:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4461-RA | 864 | CG4461-RA | 289..657 | 385..17 | 1845 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:46:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9375718..9376086 | 385..17 | 1845 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:46:39 has no hits.
BS16888.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:29:37 Download gff for
BS16888.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4461-PA | 235..603 | 17..385 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:48:51 Download gff for
BS16888.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4461-RA | 289..657 | 17..385 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:22:51 Download gff for
BS16888.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4461-RA | 289..657 | 17..385 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:22:51 Download gff for
BS16888.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9375718..9376086 | 17..385 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:48:51 Download gff for
BS16888.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9368818..9369186 | 17..385 | 100 | | Minus |
BS16888.5prime Sequence
633 bp (633 high quality bases) assembled on 2007-05-15
> BS16888.5prime
GAAGTTATCAGTCGACATGTCTCTGGTGCCTACCACATATCGCGATTTGT
CGCGCGAATTTGATCGACTCCGTCCGCTCTACCATCCGCCGTATGATTTC
CAGCTATATCCGTATCTGTGGGACGATTCGCGTCTCTGGTGGCCATCGCC
TCACACCAGCAGAAGTGACCTACTCCGACCTCTGGATGAGCTGGTGTCGC
GTCGAGTGCGCAACCAGTTGATCCAATCGACGCCGTATGAGTGGGCGCAT
CCAATGAGGTGGGACAACTACTATTCCGGTGAGCGTGTCCATGTGGATGA
GAAGGGATTTCGGATTGACATCGATGTGCGACAATTTCATCCCCACGACA
TTGTGGTCAAAACCAATGACGACTATGTCATCGTCCAGGGAAATCACAAT
CGTCGCGACGAGGGTTCCAATGGCCTGGTGGAGCGGCACTTTGTGAGGAA
GTACCTTCTGCCCCGCGGATACAATGCCAATGAGGTAATCTCGGACATAT
CCAGCGATGGCATCCTCACCATCAAGGCTCCACCACCGCCGCCAGCCAAG
TACTACACGCCCGGAGAGAGATTGGTCCGCGTTCATGAAACCGGAAAGCT
GGCCCTGCCCTGGAAATAGAAGCTTTCTAGACC
BS16888.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:23:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4461-PA | 603 | CG4461-RA | 1..603 | 17..619 | 3015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:40:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4461-RA | 864 | CG4461-RA | 55..657 | 17..619 | 3015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:40:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9375484..9376086 | 17..619 | 3015 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:40:13 has no hits.
BS16888.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:23:27 Download gff for
BS16888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4461-PA | 1..603 | 17..619 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:47:47 Download gff for
BS16888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4461-RA | 52..657 | 14..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:25:38 Download gff for
BS16888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4461-RA | 52..657 | 14..619 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:25:38 Download gff for
BS16888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9375481..9376086 | 14..619 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:47:47 Download gff for
BS16888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9368581..9369186 | 14..619 | 99 | | Plus |
BS16888.complete Sequence
635 bp assembled on 2007-05-07
GenBank Submission: FJ638206
> BS16888.complete
GAAGTTATCAGTCGACATGTCTCTGGTGCCTACCACATATCGCGATTTGT
CGCGCGAATTTGATCGACTCCGTCCGCTCTACCATCCGCCGTATGATTTC
CAGCTATATCCGTATCTGTGGGACGATTCGCGTCTCTGGTGGCCATCGCC
TCACACCAGCAGAAGTGACCTACTCCGACCTCTGGATGAGCTGGTGTCGC
GTCGAGTGCGCAACCAGTTGATCCAATCGACGCCGTATGAGTGGGCGCAT
CCAATGAGGTGGGACAACTACTATTCCGGTGAGCGTGTCCATGTGGATGA
GAAGGGATTTCGGATTGACATCGATGTGCGACAATTTCATCCCCACGACA
TTGTGGTCAAAACCAATGACGACTATGTCATCGTCCAGGGAAATCACAAT
CGTCGCGACGAGGGTTCCAATGGCCTGGTGGAGCGGCACTTTGTGAGGAA
GTACCTTCTGCCCCGCGGATACAATGCCAATGAGGTAATCTCGGACATAT
CCAGCGATGGCATCCTCACCATCAAGGCTCCACCACCGCCGCCAGCCAAG
TACTACACGCCCGGAGAGAGATTGGTCCGCGTTCATGAAACCGGAAAGCT
GGCCCTGCCCTGGAAATAGAAGCTTTCTAGACCAT
BS16888.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:24:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4461-RA | 603 | CG4461-PA | 1..603 | 17..619 | 3015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:24:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4461-RA | 864 | CG4461-RA | 55..657 | 17..619 | 3015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:24:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9375484..9376086 | 17..619 | 3015 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:24:55 has no hits.
BS16888.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:52 Download gff for
BS16888.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4461-RA | 1..603 | 17..619 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:37 Download gff for
BS16888.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4461-RA | 53..658 | 14..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:00:34 Download gff for
BS16888.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4461-RA | 55..651 | 17..613 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:52 Download gff for
BS16888.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4461-RA | 53..658 | 14..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:40:49 Download gff for
BS16888.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4461-RA | 55..651 | 17..613 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:40:49 Download gff for
BS16888.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9375484..9376080 | 17..613 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:00:34 Download gff for
BS16888.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9368584..9369180 | 17..613 | 100 | | Plus |
BS16888.pep Sequence
Translation from 16 to 618
> BS16888.pep
MSLVPTTYRDLSREFDRLRPLYHPPYDFQLYPYLWDDSRLWWPSPHTSRS
DLLRPLDELVSRRVRNQLIQSTPYEWAHPMRWDNYYSGERVHVDEKGFRI
DIDVRQFHPHDIVVKTNDDYVIVQGNHNRRDEGSNGLVERHFVRKYLLPR
GYNANEVISDISSDGILTIKAPPPPPAKYYTPGERLVRVHETGKLALPWK
*
BS16888.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4461-PA | 200 | CG4461-PA | 1..200 | 1..200 | 1105 | 100 | Plus |
| Hsp27-PB | 213 | CG4466-PB | 85..190 | 93..200 | 283 | 48.1 | Plus |
| Hsp27-PA | 213 | CG4466-PA | 85..190 | 93..200 | 283 | 48.1 | Plus |
| Hsp67Ba-PA | 445 | CG4167-PA | 122..204 | 93..176 | 250 | 50 | Plus |
| Hsp23-PB | 186 | CG4463-PB | 60..164 | 87..193 | 241 | 44.9 | Plus |
