Clone Sequence Records
BS16901.3prime Sequence
741 bp (741 high quality bases) assembled on 2007-05-15
> BS16901.3prime
ATGGTCTAGAAAGCTTTTATTCGGGCTTCTTTCCCTTAGCAAACTCGGCC
TTCTTTCCCTTGACGGGGGCGGGCTTCTGGGAGCGCAGGACAGCGGAAGC
GCGGCGGAGGGCAGCCTGTGTCAGGTCCTTGCGGTACTTGGAGCCGATAA
GCAGGTTCTTCAGCTTCTTCAGGGAACGGCGGGGACCGGCCTTGAAGTCA
ACACGCACGGTGTTCTTGGCGGGGCGCTGGGCATACTTGCCCTTCTTCAG
CACGGCGGTGAAGCCCTTCTTGTCGGCAGCTGGCACGACTCCCAGGGTCT
TCTTGTGCACGATGCCGCTGTAGCGGTACGAGCTCACGCTGGCCAAGTTG
TTTGGCTCTGTGCTGAAGGGCTTCTTCACATCGCGCTTCTTCAACAAGAA
GGCGTTGTTGTTGCGAATGATCAACCAATTGAGGTGCGAAGAGGTTGCCA
TCTCACGAGAAAATTGACATACATTTCTTAGTCTGCCTAAAGTTCCTTGG
ATTGAAAAGAGCAGTGCAGAATGTCGCACCGCCACCAGGACATTCCCATC
CGCCCACGTTACGGTTATGTGGCCGAGGAGAGTGGCCCATCGGAAGGGGC
AGCCAGGAGTTCTGGATCCGGAGCCACGCCCGCCTCCTCCTACACGGAAA
TTCCGTTCCTGGCTCAGTATCCGGGAGCGGTGCCAGAGCACGTGCTCCAG
GATCTGACGCCCACAGCCACTGGCCATGTCGACTGATAACT
BS16901.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:35:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12740-PB | 435 | RpL28-RB | 1..435 | 451..17 | 2175 | 100 | Minus |
CG12740-PA | 435 | RpL28-RA | 1..435 | 451..17 | 2175 | 100 | Minus |
CG12740-PD | 435 | RpL28-RD | 1..435 | 451..17 | 2175 | 100 | Minus |
CG12740-PC | 498 | RpL28-RC | 1..337 | 451..115 | 1685 | 100 | Minus |
CG17180-PA | 909 | CG17180-RA | 1..208 | 521..728 | 1040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:13:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL28-RG | 851 | CG12740-RG | 340..781 | 457..16 | 2210 | 100 | Minus |
RpL28-RF | 624 | CG12740-RF | 113..554 | 457..16 | 2210 | 100 | Minus |
RpL28-RE | 650 | CG12740-RE | 139..580 | 457..16 | 2210 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:13:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 540978..541248 | 458..728 | 1355 | 100 | Plus |
3L | 28110227 | 3L | 3221466..3221709 | 115..358 | 1220 | 100 | Plus |
3L | 28110227 | 3L | 3221184..3221285 | 16..117 | 510 | 100 | Plus |
3L | 28110227 | 3L | 3221881..3221980 | 358..457 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:13:53 has no hits.
BS16901.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:35:37 Download gff for
BS16901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12740-PD | 1..435 | 17..451 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:20:49 Download gff for
BS16901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL28-RE | 139..582 | 12..457 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:41 Download gff for
BS16901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL28-RE | 139..582 | 12..457 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:41 Download gff for
BS16901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 540980..541255 | 460..737 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:20:49 Download gff for
BS16901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 540980..541255 | 460..737 | 98 | | Plus |
BS16901.5prime Sequence
741 bp (741 high quality bases) assembled on 2007-05-15
> BS16901.5prime
GAAGTTATCAGTCGACATGGCCAGTGGCTGTGGGCGTCAGATCCTGGAGC
ACGTGCTCTGGCACCGCTCCCGGATACTGAGCCAGGAACGGAATTTCCGT
GTAGGAGGAGGCGGGCGTGGCTCCGGATCCAGAACTCCTGGCTGCCCCTT
CCGATGGGCCACTCTCCTCGGCCACATAACCGTAACGTGGGCGGATGGGA
ATGTCCTGGTGGCGGTGCGACATTCTGCACTGCTCTTTTCAATCCAAGGA
ACTTTAGGCAGACTAAGAAATGTATGTCAATTTTCTCGTGAGATGGCAAC
CTCTTCGCACCTCAATTGGTTGATCATTCGCAACAACAACGCCTTCTTGT
TGAAGAAGCGCGATGTGAAGAAGCCCTTCAGCACAGAGCCAAACAACTTG
GCCAGCGTGAGCTCGTACCGCTACAGCGGCATCGTGCACAAGAAGACCCT
GGGAGTCGTGCCAGCTGCCGACAAGAAGGGCTTCACCGCCGTGCTGAAGA
AGGGCAAGTATGCCCAGCGCCCCGCCAAGAACACCGTGCGTGTTGACTTC
AAGGCCGGTCCCCGCCGTTCCCTGAAGAAGCTGAAGAACCTGCTTATCGG
CTCCAAGTACCGCAAGGACCTGACACAGGCTGCCCTCCGCCGCGCTTCCG
CTGTCCTGCGCTCCCAGAAGCCCGCCCCCGTCAAGGGAAAGAAGGCCGAG
TTTGCTAAGGGAAAGAAGCCCGAATAAAAGCTTTCTAGACC
BS16901.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:29:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12740-PB | 435 | RpL28-RB | 1..435 | 293..727 | 2175 | 100 | Plus |
CG12740-PA | 435 | RpL28-RA | 1..435 | 293..727 | 2175 | 100 | Plus |
CG12740-PD | 435 | RpL28-RD | 1..435 | 293..727 | 2175 | 100 | Plus |
CG12740-PC | 498 | RpL28-RC | 1..337 | 293..629 | 1685 | 100 | Plus |
CG17180-PA | 909 | CG17180-RA | 1..208 | 223..16 | 1040 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:16:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL28-RG | 851 | CG12740-RG | 340..781 | 287..728 | 2210 | 100 | Plus |
RpL28-RF | 624 | CG12740-RF | 113..554 | 287..728 | 2210 | 100 | Plus |
RpL28-RE | 650 | CG12740-RE | 139..580 | 287..728 | 2210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:16:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 540978..541248 | 286..16 | 1355 | 100 | Minus |
3L | 28110227 | 3L | 3221466..3221709 | 629..386 | 1220 | 100 | Minus |
3L | 28110227 | 3L | 3221184..3221285 | 728..627 | 510 | 100 | Minus |
3L | 28110227 | 3L | 3221881..3221980 | 386..287 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:16:58 has no hits.
BS16901.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:29:42 Download gff for
BS16901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12740-PD | 1..435 | 293..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:17:58 Download gff for
BS16901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL28-RE | 139..582 | 287..732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:33:19 Download gff for
BS16901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL28-RE | 139..582 | 287..732 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:33:19 Download gff for
BS16901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 540980..541255 | 7..284 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:17:58 Download gff for
BS16901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 540980..541255 | 7..284 | 98 | | Minus |
BS16901.complete Sequence
743 bp assembled on 2007-05-07
GenBank Submission: FJ638207
> BS16901.complete
GAAGTTATCAGTCGACATGGCCAGTGGCTGTGGGCGTCAGATCCTGGAGC
ACGTGCTCTGGCACCGCTCCCGGATACTGAGCCAGGAACGGAATTTCCGT
GTAGGAGGAGGCGGGCGTGGCTCCGGATCCAGAACTCCTGGCTGCCCCTT
CCGATGGGCCACTCTCCTCGGCCACATAACCGTAACGTGGGCGGATGGGA
ATGTCCTGGTGGCGGTGCGACATTCTGCACTGCTCTTTTCAATCCAAGGA
ACTTTAGGCAGACTAAGAAATGTATGTCAATTTTCTCGTGAGATGGCAAC
CTCTTCGCACCTCAATTGGTTGATCATTCGCAACAACAACGCCTTCTTGT
TGAAGAAGCGCGATGTGAAGAAGCCCTTCAGCACAGAGCCAAACAACTTG
GCCAGCGTGAGCTCGTACCGCTACAGCGGCATCGTGCACAAGAAGACCCT
GGGAGTCGTGCCAGCTGCCGACAAGAAGGGCTTCACCGCCGTGCTGAAGA
AGGGCAAGTATGCCCAGCGCCCCGCCAAGAACACCGTGCGTGTTGACTTC
AAGGCCGGTCCCCGCCGTTCCCTGAAGAAGCTGAAGAACCTGCTTATCGG
CTCCAAGTACCGCAAGGACCTGACACAGGCTGCCCTCCGCCGCGCTTCCG
CTGTCCTGCGCTCCCAGAAGCCCGCCCCCGTCAAGGGAAAGAAGGCCGAG
TTTGCTAAGGGAAAGAAGCCCGAATAAAAGCTTTCTAGACCAT
BS16901.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:13:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL28-RG | 435 | CG12740-PG | 1..435 | 293..727 | 2175 | 100 | Plus |
RpL28-RF | 435 | CG12740-PF | 1..435 | 293..727 | 2175 | 100 | Plus |
RpL28-RE | 435 | CG12740-PE | 1..435 | 293..727 | 2175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:13:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL28-RG | 851 | CG12740-RG | 340..781 | 287..728 | 2210 | 100 | Plus |
RpL28-RF | 624 | CG12740-RF | 113..554 | 287..728 | 2210 | 100 | Plus |
RpL28-RE | 650 | CG12740-RE | 139..580 | 287..728 | 2210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:13:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 540978..541248 | 286..16 | 1355 | 100 | Minus |
3L | 28110227 | 3L | 3221466..3221709 | 629..386 | 1220 | 100 | Minus |
3L | 28110227 | 3L | 3221184..3221285 | 728..627 | 510 | 100 | Minus |
3L | 28110227 | 3L | 3221881..3221980 | 386..287 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:13:50 has no hits.
BS16901.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:46 Download gff for
BS16901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL28-RD | 1..435 | 293..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:45 Download gff for
BS16901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL28-RD | 145..588 | 287..732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:59 Download gff for
BS16901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL28-RE | 139..577 | 287..725 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:46 Download gff for
BS16901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL28-RD | 145..588 | 287..732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:09:08 Download gff for
BS16901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL28-RE | 139..577 | 287..725 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:08 Download gff for
BS16901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 540980..541247 | 17..284 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:59 Download gff for
BS16901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 540980..541247 | 17..284 | 100 | | Minus |
BS16901.pep Sequence
Translation from 16 to 726
> BS16901.pep
MASGCGRQILEHVLWHRSRILSQERNFRVGGGGRGSGSRTPGCPFRWATL
LGHITVTWADGNVLVAVRHSALLFSIQGTLGRLRNVCQFSREMATSSHLN
WLIIRNNNAFLLKKRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPA
ADKKGFTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRK
DLTQAALRRASAVLRSQKPAPVKGKKAEFAKGKKPE*
BS16901.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL28-PG | 144 | CG12740-PG | 1..144 | 93..236 | 726 | 100 | Plus |
RpL28-PF | 144 | CG12740-PF | 1..144 | 93..236 | 726 | 100 | Plus |
RpL28-PE | 144 | CG12740-PE | 1..144 | 93..236 | 726 | 100 | Plus |
RpL28-PD | 144 | CG12740-PD | 1..144 | 93..236 | 726 | 100 | Plus |
RpL28-PA | 144 | CG12740-PA | 1..144 | 93..236 | 726 | 100 | Plus |