Clone BS16901 Report

Search the DGRC for BS16901

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:169
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptRpL28-RA
Protein status:BS16901.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16901.3prime Sequence

741 bp (741 high quality bases) assembled on 2007-05-15

> BS16901.3prime
ATGGTCTAGAAAGCTTTTATTCGGGCTTCTTTCCCTTAGCAAACTCGGCC
TTCTTTCCCTTGACGGGGGCGGGCTTCTGGGAGCGCAGGACAGCGGAAGC
GCGGCGGAGGGCAGCCTGTGTCAGGTCCTTGCGGTACTTGGAGCCGATAA
GCAGGTTCTTCAGCTTCTTCAGGGAACGGCGGGGACCGGCCTTGAAGTCA
ACACGCACGGTGTTCTTGGCGGGGCGCTGGGCATACTTGCCCTTCTTCAG
CACGGCGGTGAAGCCCTTCTTGTCGGCAGCTGGCACGACTCCCAGGGTCT
TCTTGTGCACGATGCCGCTGTAGCGGTACGAGCTCACGCTGGCCAAGTTG
TTTGGCTCTGTGCTGAAGGGCTTCTTCACATCGCGCTTCTTCAACAAGAA
GGCGTTGTTGTTGCGAATGATCAACCAATTGAGGTGCGAAGAGGTTGCCA
TCTCACGAGAAAATTGACATACATTTCTTAGTCTGCCTAAAGTTCCTTGG
ATTGAAAAGAGCAGTGCAGAATGTCGCACCGCCACCAGGACATTCCCATC
CGCCCACGTTACGGTTATGTGGCCGAGGAGAGTGGCCCATCGGAAGGGGC
AGCCAGGAGTTCTGGATCCGGAGCCACGCCCGCCTCCTCCTACACGGAAA
TTCCGTTCCTGGCTCAGTATCCGGGAGCGGTGCCAGAGCACGTGCTCCAG
GATCTGACGCCCACAGCCACTGGCCATGTCGACTGATAACT

BS16901.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG12740-PB 435 RpL28-RB 1..435 451..17 2175 100 Minus
CG12740-PA 435 RpL28-RA 1..435 451..17 2175 100 Minus
CG12740-PD 435 RpL28-RD 1..435 451..17 2175 100 Minus
CG12740-PC 498 RpL28-RC 1..337 451..115 1685 100 Minus
CG17180-PA 909 CG17180-RA 1..208 521..728 1040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
RpL28-RG 851 CG12740-RG 340..781 457..16 2210 100 Minus
RpL28-RF 624 CG12740-RF 113..554 457..16 2210 100 Minus
RpL28-RE 650 CG12740-RE 139..580 457..16 2210 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 540978..541248 458..728 1355 100 Plus
3L 28110227 3L 3221466..3221709 115..358 1220 100 Plus
3L 28110227 3L 3221184..3221285 16..117 510 100 Plus
3L 28110227 3L 3221881..3221980 358..457 500 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:13:53 has no hits.

BS16901.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:35:37 Download gff for BS16901.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12740-PD 1..435 17..451 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:20:49 Download gff for BS16901.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL28-RE 139..582 12..457 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:41 Download gff for BS16901.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL28-RE 139..582 12..457 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:41 Download gff for BS16901.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 540980..541255 460..737 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:20:49 Download gff for BS16901.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 540980..541255 460..737 98   Plus

BS16901.5prime Sequence

741 bp (741 high quality bases) assembled on 2007-05-15

> BS16901.5prime
GAAGTTATCAGTCGACATGGCCAGTGGCTGTGGGCGTCAGATCCTGGAGC
ACGTGCTCTGGCACCGCTCCCGGATACTGAGCCAGGAACGGAATTTCCGT
GTAGGAGGAGGCGGGCGTGGCTCCGGATCCAGAACTCCTGGCTGCCCCTT
CCGATGGGCCACTCTCCTCGGCCACATAACCGTAACGTGGGCGGATGGGA
ATGTCCTGGTGGCGGTGCGACATTCTGCACTGCTCTTTTCAATCCAAGGA
ACTTTAGGCAGACTAAGAAATGTATGTCAATTTTCTCGTGAGATGGCAAC
CTCTTCGCACCTCAATTGGTTGATCATTCGCAACAACAACGCCTTCTTGT
TGAAGAAGCGCGATGTGAAGAAGCCCTTCAGCACAGAGCCAAACAACTTG
GCCAGCGTGAGCTCGTACCGCTACAGCGGCATCGTGCACAAGAAGACCCT
GGGAGTCGTGCCAGCTGCCGACAAGAAGGGCTTCACCGCCGTGCTGAAGA
AGGGCAAGTATGCCCAGCGCCCCGCCAAGAACACCGTGCGTGTTGACTTC
AAGGCCGGTCCCCGCCGTTCCCTGAAGAAGCTGAAGAACCTGCTTATCGG
CTCCAAGTACCGCAAGGACCTGACACAGGCTGCCCTCCGCCGCGCTTCCG
CTGTCCTGCGCTCCCAGAAGCCCGCCCCCGTCAAGGGAAAGAAGGCCGAG
TTTGCTAAGGGAAAGAAGCCCGAATAAAAGCTTTCTAGACC

BS16901.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG12740-PB 435 RpL28-RB 1..435 293..727 2175 100 Plus
CG12740-PA 435 RpL28-RA 1..435 293..727 2175 100 Plus
CG12740-PD 435 RpL28-RD 1..435 293..727 2175 100 Plus
CG12740-PC 498 RpL28-RC 1..337 293..629 1685 100 Plus
CG17180-PA 909 CG17180-RA 1..208 223..16 1040 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:16:59
Subject Length Description Subject Range Query Range Score Percent Strand
RpL28-RG 851 CG12740-RG 340..781 287..728 2210 100 Plus
RpL28-RF 624 CG12740-RF 113..554 287..728 2210 100 Plus
RpL28-RE 650 CG12740-RE 139..580 287..728 2210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 540978..541248 286..16 1355 100 Minus
3L 28110227 3L 3221466..3221709 629..386 1220 100 Minus
3L 28110227 3L 3221184..3221285 728..627 510 100 Minus
3L 28110227 3L 3221881..3221980 386..287 500 100 Minus
Blast to na_te.dros performed on 2015-02-12 16:16:58 has no hits.

BS16901.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:29:42 Download gff for BS16901.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12740-PD 1..435 293..727 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:17:58 Download gff for BS16901.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL28-RE 139..582 287..732 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:33:19 Download gff for BS16901.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL28-RE 139..582 287..732 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:33:19 Download gff for BS16901.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 540980..541255 7..284 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:17:58 Download gff for BS16901.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 540980..541255 7..284 98   Minus

BS16901.complete Sequence

743 bp assembled on 2007-05-07

GenBank Submission: FJ638207

> BS16901.complete
GAAGTTATCAGTCGACATGGCCAGTGGCTGTGGGCGTCAGATCCTGGAGC
ACGTGCTCTGGCACCGCTCCCGGATACTGAGCCAGGAACGGAATTTCCGT
GTAGGAGGAGGCGGGCGTGGCTCCGGATCCAGAACTCCTGGCTGCCCCTT
CCGATGGGCCACTCTCCTCGGCCACATAACCGTAACGTGGGCGGATGGGA
ATGTCCTGGTGGCGGTGCGACATTCTGCACTGCTCTTTTCAATCCAAGGA
ACTTTAGGCAGACTAAGAAATGTATGTCAATTTTCTCGTGAGATGGCAAC
CTCTTCGCACCTCAATTGGTTGATCATTCGCAACAACAACGCCTTCTTGT
TGAAGAAGCGCGATGTGAAGAAGCCCTTCAGCACAGAGCCAAACAACTTG
GCCAGCGTGAGCTCGTACCGCTACAGCGGCATCGTGCACAAGAAGACCCT
GGGAGTCGTGCCAGCTGCCGACAAGAAGGGCTTCACCGCCGTGCTGAAGA
AGGGCAAGTATGCCCAGCGCCCCGCCAAGAACACCGTGCGTGTTGACTTC
AAGGCCGGTCCCCGCCGTTCCCTGAAGAAGCTGAAGAACCTGCTTATCGG
CTCCAAGTACCGCAAGGACCTGACACAGGCTGCCCTCCGCCGCGCTTCCG
CTGTCCTGCGCTCCCAGAAGCCCGCCCCCGTCAAGGGAAAGAAGGCCGAG
TTTGCTAAGGGAAAGAAGCCCGAATAAAAGCTTTCTAGACCAT

BS16901.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
RpL28-RG 435 CG12740-PG 1..435 293..727 2175 100 Plus
RpL28-RF 435 CG12740-PF 1..435 293..727 2175 100 Plus
RpL28-RE 435 CG12740-PE 1..435 293..727 2175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:13:52
Subject Length Description Subject Range Query Range Score Percent Strand
RpL28-RG 851 CG12740-RG 340..781 287..728 2210 100 Plus
RpL28-RF 624 CG12740-RF 113..554 287..728 2210 100 Plus
RpL28-RE 650 CG12740-RE 139..580 287..728 2210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 540978..541248 286..16 1355 100 Minus
3L 28110227 3L 3221466..3221709 629..386 1220 100 Minus
3L 28110227 3L 3221184..3221285 728..627 510 100 Minus
3L 28110227 3L 3221881..3221980 386..287 500 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:13:50 has no hits.

BS16901.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:46 Download gff for BS16901.complete
Subject Subject Range Query Range Percent Splice Strand
RpL28-RD 1..435 293..727 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:45 Download gff for BS16901.complete
Subject Subject Range Query Range Percent Splice Strand
RpL28-RD 145..588 287..732 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:59 Download gff for BS16901.complete
Subject Subject Range Query Range Percent Splice Strand
RpL28-RE 139..577 287..725 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:46 Download gff for BS16901.complete
Subject Subject Range Query Range Percent Splice Strand
RpL28-RD 145..588 287..732 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:09:08 Download gff for BS16901.complete
Subject Subject Range Query Range Percent Splice Strand
RpL28-RE 139..577 287..725 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:08 Download gff for BS16901.complete
Subject Subject Range Query Range Percent Splice Strand
3L 540980..541247 17..284 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:59 Download gff for BS16901.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 540980..541247 17..284 100   Minus

BS16901.pep Sequence

Translation from 16 to 726

> BS16901.pep
MASGCGRQILEHVLWHRSRILSQERNFRVGGGGRGSGSRTPGCPFRWATL
LGHITVTWADGNVLVAVRHSALLFSIQGTLGRLRNVCQFSREMATSSHLN
WLIIRNNNAFLLKKRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPA
ADKKGFTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRK
DLTQAALRRASAVLRSQKPAPVKGKKAEFAKGKKPE*

BS16901.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
RpL28-PG 144 CG12740-PG 1..144 93..236 726 100 Plus
RpL28-PF 144 CG12740-PF 1..144 93..236 726 100 Plus
RpL28-PE 144 CG12740-PE 1..144 93..236 726 100 Plus
RpL28-PD 144 CG12740-PD 1..144 93..236 726 100 Plus
RpL28-PA 144 CG12740-PA 1..144 93..236 726 100 Plus