Clone Sequence Records
BS16906.complete Sequence
797 bp assembled on 2010-02-09
GenBank Submission: KX802718
> BS16906.complete
GAAGTTATCAGTCGACATGAACGATTTCGGGCAGTTCGCTAAGTCGCAAG
GCCCAAAGTTGGTGCCATTCCTGGTTACTATTGTCCTATACTTCTCGCTG
GTGAGGAAGGATCCTCAAGGAGAGCTATGGACCACCGTGCTCAAATGCCT
GCCCATTTTCGCGCTTGTATTCTATGTGGTGGCCAAGGGAATCTCGCTCA
AGAAGGAATACCGTCGCTCACTTTGGATTCTATTGGGTCTGGTTTTCTCG
AGTGGTGGTGATGCTCTGCTCAACATAAATCTCTTTCCCTTCGGAATGAT
CTCCTTTGGAGTGGCGCACGTGTTTTATATCAGCGCCTTTGGCTGGAAGC
CCATAAAGTGGTTCATTGGACTGCTCTTGTACGTGGCCGTATCGCTTTGT
AAGTTTACTGGTCATTATATACGTATACCTTACCTGGAATATTTGAAACC
CCCAGTTGTTTACTTCGTGCACACGAAACTGGACGAGATTCTCATCATCG
GAGTGCCCATCTACTGTTTCCTGATCACCACAATGCTGTGGAGATCGCTG
GCCCGCGCCGTGGACTCCAGGAACTTCCTCGCCGTGTTCTGTGCCATCGG
AGCCATTCTGTTTGTGATCTCCGACGCCCTGATCGCGGTCACCATGTTCG
TGGGCGTGCCCCTGCCCTGCGCCCGCCTCCAGATCATGATCACCTACTAC
GCCGCCCAGTTTGCCATTGCGCTGAGCACCGCGGACGACGGTCCTGCCCT
CCAGCGCTCCCTTCGCAAGAAAATTAAGTGAAAGCTTTCTAGACCAT
BS16906.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:01:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7582-RA | 765 | CG7582-PA | 1..765 | 17..781 | 3825 | 100 | Plus |
CG7582-RB | 429 | CG7582-PB | 104..429 | 456..781 | 1630 | 100 | Plus |
CG7582-RB | 429 | CG7582-PB | 1..103 | 296..398 | 515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:01:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7582-RA | 1190 | CG7582-RA | 176..941 | 17..782 | 3830 | 100 | Plus |
CG7582-RB | 979 | CG7582-RB | 43..403 | 38..398 | 1805 | 100 | Plus |
CG7582-RB | 979 | CG7582-RB | 404..730 | 456..782 | 1635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:01:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29680490..29681064 | 782..208 | 2875 | 100 | Minus |
3R | 32079331 | 3R | 29681127..29681296 | 207..38 | 850 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:01:39 has no hits.
BS16906.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:34 Download gff for
BS16906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7582-RA | 176..939 | 17..780 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:16 Download gff for
BS16906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7582-RA | 176..939 | 17..780 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:41 Download gff for
BS16906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7582-RA | 176..939 | 17..780 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:59 Download gff for
BS16906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7582-RA | 176..939 | 17..780 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:59 Download gff for
BS16906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29681127..29681296 | 38..207 | 100 | <- | Minus |
3R | 29681846..29681866 | 17..37 | 100 | | Minus |
3R | 29680492..29681064 | 208..780 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:16 Download gff for
BS16906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25506214..25506786 | 208..780 | 100 | <- | Minus |
arm_3R | 25506849..25507018 | 38..207 | 100 | <- | Minus |
arm_3R | 25507568..25507588 | 17..37 | 100 | | Minus |
BS16906.3prime Sequence
724 bp (723 high quality bases) assembled on 2007-05-15
> BS16906.3prime
ATGGTCTAGAAAGCGTTTCACTTAATTTTCTTGCGAAGGGAGCGCTGGAG
GGCAGGACCGTCGTCCGCGGTGCTCAGCGCAATGGCAAACTGGGCGGCGT
AGTAGGTGATCATGATCTGGAGGCGGGCGCAGGGCAGGGGCACGCCCACG
AACATGGTGACCGCGATCAGGGCGTCGGAGATCACAAACAGAATGGCTCC
GATGGCACAGAACACGGCGAGGAAGTTCCTGGAGTCCACGGCGCGGGCCA
GCGATCTCCACAGCATTGTGGTGATCAGGAAACAGTAGATGGGCACTCCG
ATGATGAGAATCTCGTCCAGTTTCGTGTGCACGAAGTAAACAACTGGGGG
TTTCAAATATTCCAGGTAAGGTATACGTATATAATGACCAGTAAACTTAC
AAAGCGATACGGCCACGTACAAGAGCAGTCCAATGAACCACTTTATGGGC
TTCCAGCCAAAGGCGCTGATATAAAACACGTGCGCCACTCCAAAGGAGAT
CATTCCGAAGGGAAAGAGATTTATGTTGAGCAGAGCATCACCACCACTCG
AGAAAACCAGACCCAATAGAATCCAAAGTGAGCGACGGTATTCCTTCTTG
AGCGAGATTCCCTTGGCCACCACATAGAATACAAGCGCGAAAATGGGCAG
GCATTTGAGCACGGTGGTCCATAGCTCTCCTTGAGGATCCTTCCTCACCA
GCGAGAAGTATAGGACAATAGTAA
BS16906.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:39:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7582-PA | 765 | CG7582-RA | 59..765 | 724..18 | 3535 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:03:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7582-RA | 1190 | CG7582-RA | 234..941 | 724..17 | 3540 | 100 | Minus |
CG7582-RB | 979 | CG7582-RB | 404..730 | 343..17 | 1635 | 100 | Minus |
CG7582-RB | 979 | CG7582-RB | 80..403 | 724..401 | 1620 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:03:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29680490..29681064 | 17..591 | 2875 | 100 | Plus |
3R | 32079331 | 3R | 29681127..29681259 | 592..724 | 665 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:03:55 has no hits.
BS16906.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:39:25 Download gff for
BS16906.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7582-PA | 61..765 | 18..722 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:36:19 Download gff for
BS16906.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7582-RA | 234..941 | 17..724 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:43 Download gff for
BS16906.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7582-RA | 234..941 | 17..724 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:43 Download gff for
BS16906.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29680490..29681064 | 17..591 | 100 | <- | Plus |
3R | 29681127..29681259 | 592..724 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:36:19 Download gff for
BS16906.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25506212..25506786 | 17..591 | 100 | <- | Plus |
arm_3R | 25506849..25506981 | 592..724 | 100 | | Plus |
BS16906.5prime Sequence
729 bp (696 high quality bases) assembled on 2007-05-15
> BS16906.5prime
GAAGTTACCTTTAAACATGAACGATTTCGGGCAGTTCGCTAAGTCGCAAG
GCCCAAAGTTGGTGCCATTCCTGGTTACTATTCTCCTATACTTCTCGCTG
GTGAGGAAGGATCCTCAAGGAGAGCTATGGACCACCGTGCTCAAATGCCT
GCCCATTTTCGCGCTTGTATTCTATGTGGTGGCCAAGGGAATCTCGCTCA
AGAAGGAATACCGTCGCTCACTTTGGATTCTATTGGGTCTGGTTTTCTCG
AGTGGTGGTGATGCTCTGCTCAACATAAATCTCTTTCCCTTCGGAATGAT
CTCCTTTGGAGTGGCGCACGTGTTTTATATCAGCGCCTTTGGCTGGAAGC
CCATAAAGTGGTTCATTGGACTGCTCTTGTACGTGGCCGTATCGCTTTGT
AAGTTTACTGGTCATTATATACGTATACCTTACCTGGAATATTTGAAACC
CCCAGTTGTTTACTTCGTGCACACGAAACTGGACGAGATTCTCATCATCG
GAGTGCCCATCTACTGTTTCCTGATCACCACAATGCTGTGGAGATCGCTG
GCCCGCGCCGTGGACTCCAGGAACTTCCTCGCCGTGTTCTGTGCCATCGG
AGCCATTCTGTTTGTGATCTCCGACGCCCTGATCGCGGTCACCATGTTCG
TGGGCGTGCCCCTGCCCTGCGCCCGCCTCCAGATCATGATCACCTACTAC
GCCGCCCAGTTTGCCATTGCGCTGAGCAC
BS16906.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:32:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7582-PA | 765 | CG7582-RA | 1..713 | 17..729 | 3540 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:43:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7582-RA | 1190 | CG7582-RA | 176..888 | 17..729 | 3550 | 99.9 | Plus |
CG7582-RB | 979 | CG7582-RB | 43..403 | 38..398 | 1790 | 99.7 | Plus |
CG7582-RB | 979 | CG7582-RB | 404..677 | 456..729 | 1370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:43:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29680543..29681064 | 729..208 | 2610 | 100 | Minus |
3R | 32079331 | 3R | 29681127..29681296 | 207..38 | 835 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:43:30 has no hits.
BS16906.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:32:58 Download gff for
BS16906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7582-PA | 1..713 | 17..729 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:30:48 Download gff for
BS16906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7582-RA | 176..888 | 17..729 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:29 Download gff for
BS16906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7582-RA | 176..888 | 17..729 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:29 Download gff for
BS16906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29680543..29681064 | 208..729 | 100 | <- | Minus |
3R | 29681127..29681296 | 38..207 | 99 | <- | Minus |
3R | 29681846..29681866 | 17..37 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:30:48 Download gff for
BS16906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25506265..25506786 | 208..729 | 100 | <- | Minus |
arm_3R | 25506849..25507018 | 38..207 | 99 | <- | Minus |
arm_3R | 25507568..25507588 | 17..37 | 100 | | Minus |
BS16906.pep Sequence
Translation from 16 to 780
> BS16906.pep
MNDFGQFAKSQGPKLVPFLVTIVLYFSLVRKDPQGELWTTVLKCLPIFAL
VFYVVAKGISLKKEYRRSLWILLGLVFSSGGDALLNINLFPFGMISFGVA
HVFYISAFGWKPIKWFIGLLLYVAVSLCKFTGHYIRIPYLEYLKPPVVYF
VHTKLDEILIIGVPIYCFLITTMLWRSLARAVDSRNFLAVFCAIGAILFV
ISDALIAVTMFVGVPLPCARLQIMITYYAAQFAIALSTADDGPALQRSLR
KKIK*
BS16906.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:16:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7582-PA | 254 | CG7582-PA | 1..254 | 1..254 | 1311 | 100 | Plus |
CG7582-PB | 142 | CG7582-PB | 1..142 | 94..254 | 684 | 87.6 | Plus |