Clone BS16906 Report

Search the DGRC for BS16906

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:169
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG7582-RA
Protein status:BS16906.pep: full length peptide match
Sequenced Size:797

Clone Sequence Records

BS16906.complete Sequence

797 bp assembled on 2010-02-09

GenBank Submission: KX802718

> BS16906.complete
GAAGTTATCAGTCGACATGAACGATTTCGGGCAGTTCGCTAAGTCGCAAG
GCCCAAAGTTGGTGCCATTCCTGGTTACTATTGTCCTATACTTCTCGCTG
GTGAGGAAGGATCCTCAAGGAGAGCTATGGACCACCGTGCTCAAATGCCT
GCCCATTTTCGCGCTTGTATTCTATGTGGTGGCCAAGGGAATCTCGCTCA
AGAAGGAATACCGTCGCTCACTTTGGATTCTATTGGGTCTGGTTTTCTCG
AGTGGTGGTGATGCTCTGCTCAACATAAATCTCTTTCCCTTCGGAATGAT
CTCCTTTGGAGTGGCGCACGTGTTTTATATCAGCGCCTTTGGCTGGAAGC
CCATAAAGTGGTTCATTGGACTGCTCTTGTACGTGGCCGTATCGCTTTGT
AAGTTTACTGGTCATTATATACGTATACCTTACCTGGAATATTTGAAACC
CCCAGTTGTTTACTTCGTGCACACGAAACTGGACGAGATTCTCATCATCG
GAGTGCCCATCTACTGTTTCCTGATCACCACAATGCTGTGGAGATCGCTG
GCCCGCGCCGTGGACTCCAGGAACTTCCTCGCCGTGTTCTGTGCCATCGG
AGCCATTCTGTTTGTGATCTCCGACGCCCTGATCGCGGTCACCATGTTCG
TGGGCGTGCCCCTGCCCTGCGCCCGCCTCCAGATCATGATCACCTACTAC
GCCGCCCAGTTTGCCATTGCGCTGAGCACCGCGGACGACGGTCCTGCCCT
CCAGCGCTCCCTTCGCAAGAAAATTAAGTGAAAGCTTTCTAGACCAT

BS16906.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7582-RA 765 CG7582-PA 1..765 17..781 3825 100 Plus
CG7582-RB 429 CG7582-PB 104..429 456..781 1630 100 Plus
CG7582-RB 429 CG7582-PB 1..103 296..398 515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7582-RA 1190 CG7582-RA 176..941 17..782 3830 100 Plus
CG7582-RB 979 CG7582-RB 43..403 38..398 1805 100 Plus
CG7582-RB 979 CG7582-RB 404..730 456..782 1635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29680490..29681064 782..208 2875 100 Minus
3R 32079331 3R 29681127..29681296 207..38 850 100 Minus
Blast to na_te.dros performed on 2014-11-27 11:01:39 has no hits.

BS16906.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:34 Download gff for BS16906.complete
Subject Subject Range Query Range Percent Splice Strand
CG7582-RA 176..939 17..780 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:16 Download gff for BS16906.complete
Subject Subject Range Query Range Percent Splice Strand
CG7582-RA 176..939 17..780 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:41 Download gff for BS16906.complete
Subject Subject Range Query Range Percent Splice Strand
CG7582-RA 176..939 17..780 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:59 Download gff for BS16906.complete
Subject Subject Range Query Range Percent Splice Strand
CG7582-RA 176..939 17..780 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:59 Download gff for BS16906.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29681127..29681296 38..207 100 <- Minus
3R 29681846..29681866 17..37 100   Minus
3R 29680492..29681064 208..780 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:16 Download gff for BS16906.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25506214..25506786 208..780 100 <- Minus
arm_3R 25506849..25507018 38..207 100 <- Minus
arm_3R 25507568..25507588 17..37 100   Minus

BS16906.3prime Sequence

724 bp (723 high quality bases) assembled on 2007-05-15

> BS16906.3prime
ATGGTCTAGAAAGCGTTTCACTTAATTTTCTTGCGAAGGGAGCGCTGGAG
GGCAGGACCGTCGTCCGCGGTGCTCAGCGCAATGGCAAACTGGGCGGCGT
AGTAGGTGATCATGATCTGGAGGCGGGCGCAGGGCAGGGGCACGCCCACG
AACATGGTGACCGCGATCAGGGCGTCGGAGATCACAAACAGAATGGCTCC
GATGGCACAGAACACGGCGAGGAAGTTCCTGGAGTCCACGGCGCGGGCCA
GCGATCTCCACAGCATTGTGGTGATCAGGAAACAGTAGATGGGCACTCCG
ATGATGAGAATCTCGTCCAGTTTCGTGTGCACGAAGTAAACAACTGGGGG
TTTCAAATATTCCAGGTAAGGTATACGTATATAATGACCAGTAAACTTAC
AAAGCGATACGGCCACGTACAAGAGCAGTCCAATGAACCACTTTATGGGC
TTCCAGCCAAAGGCGCTGATATAAAACACGTGCGCCACTCCAAAGGAGAT
CATTCCGAAGGGAAAGAGATTTATGTTGAGCAGAGCATCACCACCACTCG
AGAAAACCAGACCCAATAGAATCCAAAGTGAGCGACGGTATTCCTTCTTG
AGCGAGATTCCCTTGGCCACCACATAGAATACAAGCGCGAAAATGGGCAG
GCATTTGAGCACGGTGGTCCATAGCTCTCCTTGAGGATCCTTCCTCACCA
GCGAGAAGTATAGGACAATAGTAA

BS16906.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:39:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG7582-PA 765 CG7582-RA 59..765 724..18 3535 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:03:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7582-RA 1190 CG7582-RA 234..941 724..17 3540 100 Minus
CG7582-RB 979 CG7582-RB 404..730 343..17 1635 100 Minus
CG7582-RB 979 CG7582-RB 80..403 724..401 1620 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:03:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29680490..29681064 17..591 2875 100 Plus
3R 32079331 3R 29681127..29681259 592..724 665 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:03:55 has no hits.

BS16906.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:39:25 Download gff for BS16906.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7582-PA 61..765 18..722 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:36:19 Download gff for BS16906.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7582-RA 234..941 17..724 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:43 Download gff for BS16906.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7582-RA 234..941 17..724 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:43 Download gff for BS16906.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29680490..29681064 17..591 100 <- Plus
3R 29681127..29681259 592..724 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:36:19 Download gff for BS16906.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25506212..25506786 17..591 100 <- Plus
arm_3R 25506849..25506981 592..724 100   Plus

BS16906.5prime Sequence

729 bp (696 high quality bases) assembled on 2007-05-15

> BS16906.5prime
GAAGTTACCTTTAAACATGAACGATTTCGGGCAGTTCGCTAAGTCGCAAG
GCCCAAAGTTGGTGCCATTCCTGGTTACTATTCTCCTATACTTCTCGCTG
GTGAGGAAGGATCCTCAAGGAGAGCTATGGACCACCGTGCTCAAATGCCT
GCCCATTTTCGCGCTTGTATTCTATGTGGTGGCCAAGGGAATCTCGCTCA
AGAAGGAATACCGTCGCTCACTTTGGATTCTATTGGGTCTGGTTTTCTCG
AGTGGTGGTGATGCTCTGCTCAACATAAATCTCTTTCCCTTCGGAATGAT
CTCCTTTGGAGTGGCGCACGTGTTTTATATCAGCGCCTTTGGCTGGAAGC
CCATAAAGTGGTTCATTGGACTGCTCTTGTACGTGGCCGTATCGCTTTGT
AAGTTTACTGGTCATTATATACGTATACCTTACCTGGAATATTTGAAACC
CCCAGTTGTTTACTTCGTGCACACGAAACTGGACGAGATTCTCATCATCG
GAGTGCCCATCTACTGTTTCCTGATCACCACAATGCTGTGGAGATCGCTG
GCCCGCGCCGTGGACTCCAGGAACTTCCTCGCCGTGTTCTGTGCCATCGG
AGCCATTCTGTTTGTGATCTCCGACGCCCTGATCGCGGTCACCATGTTCG
TGGGCGTGCCCCTGCCCTGCGCCCGCCTCCAGATCATGATCACCTACTAC
GCCGCCCAGTTTGCCATTGCGCTGAGCAC

BS16906.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7582-PA 765 CG7582-RA 1..713 17..729 3540 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7582-RA 1190 CG7582-RA 176..888 17..729 3550 99.9 Plus
CG7582-RB 979 CG7582-RB 43..403 38..398 1790 99.7 Plus
CG7582-RB 979 CG7582-RB 404..677 456..729 1370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:43:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29680543..29681064 729..208 2610 100 Minus
3R 32079331 3R 29681127..29681296 207..38 835 99.4 Minus
Blast to na_te.dros performed on 2015-02-11 23:43:30 has no hits.

BS16906.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:32:58 Download gff for BS16906.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7582-PA 1..713 17..729 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:30:48 Download gff for BS16906.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7582-RA 176..888 17..729 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:29 Download gff for BS16906.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7582-RA 176..888 17..729 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:29 Download gff for BS16906.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29680543..29681064 208..729 100 <- Minus
3R 29681127..29681296 38..207 99 <- Minus
3R 29681846..29681866 17..37 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:30:48 Download gff for BS16906.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25506265..25506786 208..729 100 <- Minus
arm_3R 25506849..25507018 38..207 99 <- Minus
arm_3R 25507568..25507588 17..37 100   Minus

BS16906.pep Sequence

Translation from 16 to 780

> BS16906.pep
MNDFGQFAKSQGPKLVPFLVTIVLYFSLVRKDPQGELWTTVLKCLPIFAL
VFYVVAKGISLKKEYRRSLWILLGLVFSSGGDALLNINLFPFGMISFGVA
HVFYISAFGWKPIKWFIGLLLYVAVSLCKFTGHYIRIPYLEYLKPPVVYF
VHTKLDEILIIGVPIYCFLITTMLWRSLARAVDSRNFLAVFCAIGAILFV
ISDALIAVTMFVGVPLPCARLQIMITYYAAQFAIALSTADDGPALQRSLR
KKIK*

BS16906.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:16:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG7582-PA 254 CG7582-PA 1..254 1..254 1311 100 Plus
CG7582-PB 142 CG7582-PB 1..142 94..254 684 87.6 Plus