Clone BS16907 Report

Search the DGRC for BS16907

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:169
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG1791-RA
Protein status:BS16907.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16907.3prime Sequence

917 bp (857 high quality bases) assembled on 2007-05-15

> BS16907.3prime
ATGGTCTAGAAAGCTTCTACTGTTTCTTGAGCGGCCGGATGAGCATGCGG
ACATAGCTAAGCGAGCCAGTGGGTCCTGGCAGGAAGGATTTCCACAGGAT
GCCCTTGAAATAGCCAATCTCCTGTCCGTACTTCGACTGGAATGTACCAA
ACAAGTTGCTCTCGAAGCACTCCCTTCCATACCACCAGGCACCTGCATGC
GTCCTGGCGCAGTTTTGGCCATTATCGTCGTTATCCTGATCGAATGTGGT
GAACTTCTTGCCCGCATGGTAACGTAGCGAATCACCAGCATCACCTTTGT
AGGCACCAAGTACATATAGAAGATACTTTTCCGATTCACTGCCAATACTG
AAGTGATCGTACAGCGCGAAACGTTCCTCTCCACTTTTCTTCTTCATTAT
GATGAGCAACTCGTGGTGCTCACTGTTGGTCAACCTGTGCAGCTTATCCA
ATCCGATAAAGAACTCCGAGTTTAAAGCGCCAAAACCGGCCTTATAGTTC
TGCCAATCCTTGTTGAAGTCCTCGCTGCCATCGAATCTATAGGCGATCAC
CATCCAGCCACCATCTCTCACTTTCTGGTCACAGCTCGCGAAGAAGGGTT
CCATATCCGGAGCAATTCGGATCCTCACCTGACCATGCTTCTCATCGTAG
CAATTTCGGGGCGTATCGTCGGGGGGCGTGGCCAGCGCCAACGGAAAGGT
CTGCACACTTGCTGGCAATGGGCGAAGTAACCTGGTTGCAATGGGTATTC
CGGTGCCCTGATTTTTATACTCCTCAATGAGTCCCTGTAGCTCATTAAGC
TCTGTTTTGAGATTTTGCAGCTCATCTGTCATGAATTGTACACGTGCTGC
TAAGCCAGCCAAAGTGCTTACTGGACAACTGGCGGTATCATTTTCAGCCA
GCAAAAAGGGCTCCGCC

BS16907.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1791-PA 1005 CG1791-RA 105..1005 917..17 4505 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG1791-RA 1179 CG1791-RA 209..1110 917..16 4510 100 Minus
CG1791-RC 1176 CG1791-RC 209..1107 917..16 4455 99.7 Minus
CG1791-RB 1193 CG1791-RB 209..1124 917..16 4360 98.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9963725..9964294 159..728 2850 100 Plus
X 23542271 X 9963522..9963666 16..160 725 100 Plus
X 23542271 X 9964366..9964480 729..843 575 100 Plus
X 23542271 X 9964538..9964584 843..889 235 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:32:40 has no hits.

BS16907.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:35:42 Download gff for BS16907.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1791-PA 105..1005 17..917 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:43:34 Download gff for BS16907.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1791-RA 209..1120 9..917 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:40:09 Download gff for BS16907.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1791-RA 209..1120 9..917 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:40:09 Download gff for BS16907.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9963512..9963664 9..158 97 <- Plus
X 9963725..9964294 159..728 100 <- Plus
X 9964366..9964479 729..842 100 <- Plus
X 9964538..9964584 843..889 100 <- Plus
X 9964643..9964670 890..917 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:43:34 Download gff for BS16907.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9857545..9857697 9..158 97 <- Plus
arm_X 9857758..9858327 159..728 100 <- Plus
arm_X 9858399..9858512 729..842 100 <- Plus
arm_X 9858571..9858617 843..889 100 <- Plus
arm_X 9858676..9858703 890..917 100   Plus

BS16907.5prime Sequence

859 bp (798 high quality bases) assembled on 2007-05-15

> BS16907.5prime
GAAGTTATCAGTCGACATGGCGCTGGAGGCGCTCGTCACGGCTTTGGCTT
GCCTCAGCACCACCACAAATGCCACGAGTAACTTGCCAGGAAAACACTTT
TCCGTGATAATGAGAAACTCGGCGGAGCCCTTTTTGCTGGCTGAAAATGA
TACCGCCAGTTGTCCAGTAAGCACTTTGGCTGGCTTAGCAGCACGTGTAC
AATTCATGACAGATGAGCTGCAAAATCTCAAAACAGAGCTTAATGAGCTA
CAGGGACTCATTGAGGAGTATAAAAATCAGGGCACCGGAATACCCATTGC
AACCAGGTTACTTCGCCCATTGCCAGCAAGTGTGCAGACCTTTCCGTTGG
CGCTGGCCACGCCCCCCGACGATACGCCCCGAAATTGCTACGATGAGAAG
CATGGTCAGGTGAGGATCCGAATTGCTCCGGATATGGAACCCTTCTTCGC
GAGCTGTGACCAGAAAGTGAGAGATGGTGGCTGGATGGTGATCGCCTATA
GATTCGATGGCAGCGAGGACTTCAACAAGGATTGGCAGAACTATAAGGCC
GGTTTTGGCGCTTTAAACTCGGAGTTCTTTATCGGATTGGATAAGCTGCA
CAGGTTGACCAACAGTGAGCACCACGAGTTGCTCATCATAATGAAGAAGA
AAAGTGGAGAGGAACGTTTCGCGCTGTACGATCACTTCAGTATTGGCAGT
GAATCGGAAAAGTATCTTCTATATGTACTTGGTGCCTACAAAGGTGATGC
TGGTGATTCGCTACGTTACCATGCGGGCAAGAAGTTCACCACATTCGATC
AGGATAACGACGATAATGGCCAAAACTGCGCCAGGACGCATGCAGGTGCC
TGGTGGTAT

BS16907.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG1791-PA 1005 CG1791-RA 1..843 17..859 4215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:17:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG1791-RA 1179 CG1791-RA 105..947 17..859 4215 100 Plus
CG1791-RC 1176 CG1791-RC 105..944 17..859 4160 99.6 Plus
CG1791-RB 1193 CG1791-RB 105..961 17..859 4065 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9963745..9964294 859..310 2750 100 Minus
X 23542271 X 9964642..9964774 149..17 665 100 Minus
X 23542271 X 9964366..9964480 309..195 575 100 Minus
X 23542271 X 9964538..9964584 195..149 235 100 Minus
Blast to na_te.dros performed on 2015-02-12 16:17:13 has no hits.

BS16907.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:29:46 Download gff for BS16907.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1791-PA 1..843 17..859 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:18:01 Download gff for BS16907.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1791-RA 99..947 7..859 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:33:49 Download gff for BS16907.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1791-RA 99..947 7..859 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:33:49 Download gff for BS16907.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9963745..9964294 310..859 100 <- Minus
X 9964366..9964479 196..309 100 <- Minus
X 9964538..9964584 149..195 100 <- Minus
X 9964643..9964780 7..148 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:18:01 Download gff for BS16907.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9857778..9858327 310..859 100 <- Minus
arm_X 9858399..9858512 196..309 100 <- Minus
arm_X 9858571..9858617 149..195 100 <- Minus
arm_X 9858676..9858813 7..148 97   Minus

BS16907.complete Sequence

1037 bp assembled on 2007-05-07

GenBank Submission: FJ638880

> BS16907.complete
GAAGTTATCAGTCGACATGGCGCTGGAGGCGCTCGTCACGGCTTTGGCTT
GCCTCAGCACCACCACAAATGCCACGAGTAACTTGCCAGGAAAACACTTT
TCCGTGATAATGAGAAACTCGGCGGAGCCCTTTTTGCTGGCTGAAAATGA
TACCGCCAGTTGTCCAGTAAGCACTTTGGCTGGCTTAGCAGCACGTGTAC
AATTCATGACAGATGAGCTGCAAAATCTCAAAACAGAGCTTAATGAGCTA
CAGGGACTCATTGAGGAGTATAAAAATCAGGGCACCGGAATACCCATTGC
AACCAGGTTACTTCGCCCATTGCCAGCAAGTGTGCAGACCTTTCCGTTGG
CGCTGGCCACGCCCCCCGACGATACGCCCCGAAATTGCTACGATGAGAAG
CATGGTCAGGTGAGGATCCGAATTGCTCCGGATATGGAACCCTTCTTCGC
GAGCTGTGACCAGAAAGTGAGAGATGGTGGCTGGATGGTGATCGCCTATA
GATTCGATGGCAGCGAGGACTTCAACAAGGATTGGCAGAACTATAAGGCC
GGTTTTGGCGCTTTAAACTCGGAGTTCTTTATCGGATTGGATAAGCTGCA
CAGGTTGACCAACAGTGAGCACCACGAGTTGCTCATCATAATGAAGAAGA
AAAGTGGAGAGGAACGTTTCGCGCTGTACGATCACTTCAGTATTGGCAGT
GAATCGGAAAAGTATCTTCTATATGTACTTGGTGCCTACAAAGGTGATGC
TGGTGATTCGCTACGTTACCATGCGGGCAAGAAGTTCACCACATTCGATC
AGGATAACGACGATAATGGCCAAAACTGCGCCAGGACGCATGCAGGTGCC
TGGTGGTATGGAAGGGAGTGCTTCGAGAGCAACTTGTTTGGTACATTCCA
GTCGAAGTACGGACAGGAGATTGGCTATTTCAAGGGCATCCTGTGGAAAT
CCTTCCTGCCAGGACCCACTGGCTCGCTTAGCTATGTCCGCATGCTCATC
CGGCCGCTCAAGAAACAGTAGAAGCTTTCTAGACCAT

BS16907.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG1791-RA 1005 CG1791-PA 1..1005 17..1021 5025 100 Plus
CG1791-RC 1002 CG1791-PC 1..1002 17..1021 4945 99.7 Plus
CG1791-RB 588 CG1791-PB 1..588 434..1021 2940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1791-RA 1179 CG1791-RA 105..1110 17..1022 5030 100 Plus
CG1791-RC 1176 CG1791-RC 105..1107 17..1022 4950 99.7 Plus
CG1791-RB 1193 CG1791-RB 105..1124 17..1022 4855 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:00:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9963725..9964294 879..310 2850 100 Minus
X 23542271 X 9963522..9963666 1022..878 725 100 Minus
X 23542271 X 9964642..9964774 149..17 665 100 Minus
X 23542271 X 9964366..9964480 309..195 575 100 Minus
X 23542271 X 9964538..9964584 195..149 235 100 Minus
Blast to na_te.dros performed on 2014-11-27 02:00:37 has no hits.

BS16907.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:36 Download gff for BS16907.complete
Subject Subject Range Query Range Percent Splice Strand
CG1791-RA 1..1005 17..1021 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:39 Download gff for BS16907.complete
Subject Subject Range Query Range Percent Splice Strand
CG1791-RA 99..1120 7..1029 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:14 Download gff for BS16907.complete
Subject Subject Range Query Range Percent Splice Strand
CG1791-RA 105..1109 17..1021 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:37 Download gff for BS16907.complete
Subject Subject Range Query Range Percent Splice Strand
CG1791-RA 99..1120 7..1029 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:35:55 Download gff for BS16907.complete
Subject Subject Range Query Range Percent Splice Strand
CG1791-RA 105..1109 17..1021 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:35:55 Download gff for BS16907.complete
Subject Subject Range Query Range Percent Splice Strand
X 9963523..9963664 880..1021 100 <- Minus
X 9963725..9964294 310..879 100 <- Minus
X 9964366..9964479 196..309 100 <- Minus
X 9964538..9964584 149..195 100 <- Minus
X 9964643..9964774 17..148 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:14 Download gff for BS16907.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9857556..9857697 880..1021 100 <- Minus
arm_X 9857758..9858327 310..879 100 <- Minus
arm_X 9858399..9858512 196..309 100 <- Minus
arm_X 9858571..9858617 149..195 100 <- Minus
arm_X 9858676..9858807 17..148 100   Minus

BS16907.pep Sequence

Translation from 16 to 1020

> BS16907.pep
MALEALVTALACLSTTTNATSNLPGKHFSVIMRNSAEPFLLAENDTASCP
VSTLAGLAARVQFMTDELQNLKTELNELQGLIEEYKNQGTGIPIATRLLR
PLPASVQTFPLALATPPDDTPRNCYDEKHGQVRIRIAPDMEPFFASCDQK
VRDGGWMVIAYRFDGSEDFNKDWQNYKAGFGALNSEFFIGLDKLHRLTNS
EHHELLIIMKKKSGEERFALYDHFSIGSESEKYLLYVLGAYKGDAGDSLR
YHAGKKFTTFDQDNDDNGQNCARTHAGAWWYGRECFESNLFGTFQSKYGQ
EIGYFKGILWKSFLPGPTGSLSYVRMLIRPLKKQ*

BS16907.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG1791-PA 334 CG1791-PA 1..334 1..334 1778 100 Plus
CG1791-PC 333 CG1791-PC 1..333 1..334 1762 99.7 Plus
CG1791-PB 195 CG1791-PB 1..195 140..334 1069 100 Plus
CG1889-PD 338 CG1889-PD 5..334 1..330 774 46.4 Plus
CG1889-PC 332 CG1889-PC 5..328 1..330 773 47.2 Plus