Clone Sequence Records
BS16907.3prime Sequence
917 bp (857 high quality bases) assembled on 2007-05-15
> BS16907.3prime
ATGGTCTAGAAAGCTTCTACTGTTTCTTGAGCGGCCGGATGAGCATGCGG
ACATAGCTAAGCGAGCCAGTGGGTCCTGGCAGGAAGGATTTCCACAGGAT
GCCCTTGAAATAGCCAATCTCCTGTCCGTACTTCGACTGGAATGTACCAA
ACAAGTTGCTCTCGAAGCACTCCCTTCCATACCACCAGGCACCTGCATGC
GTCCTGGCGCAGTTTTGGCCATTATCGTCGTTATCCTGATCGAATGTGGT
GAACTTCTTGCCCGCATGGTAACGTAGCGAATCACCAGCATCACCTTTGT
AGGCACCAAGTACATATAGAAGATACTTTTCCGATTCACTGCCAATACTG
AAGTGATCGTACAGCGCGAAACGTTCCTCTCCACTTTTCTTCTTCATTAT
GATGAGCAACTCGTGGTGCTCACTGTTGGTCAACCTGTGCAGCTTATCCA
ATCCGATAAAGAACTCCGAGTTTAAAGCGCCAAAACCGGCCTTATAGTTC
TGCCAATCCTTGTTGAAGTCCTCGCTGCCATCGAATCTATAGGCGATCAC
CATCCAGCCACCATCTCTCACTTTCTGGTCACAGCTCGCGAAGAAGGGTT
CCATATCCGGAGCAATTCGGATCCTCACCTGACCATGCTTCTCATCGTAG
CAATTTCGGGGCGTATCGTCGGGGGGCGTGGCCAGCGCCAACGGAAAGGT
CTGCACACTTGCTGGCAATGGGCGAAGTAACCTGGTTGCAATGGGTATTC
CGGTGCCCTGATTTTTATACTCCTCAATGAGTCCCTGTAGCTCATTAAGC
TCTGTTTTGAGATTTTGCAGCTCATCTGTCATGAATTGTACACGTGCTGC
TAAGCCAGCCAAAGTGCTTACTGGACAACTGGCGGTATCATTTTCAGCCA
GCAAAAAGGGCTCCGCC
BS16907.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:35:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1791-PA | 1005 | CG1791-RA | 105..1005 | 917..17 | 4505 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:32:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1791-RA | 1179 | CG1791-RA | 209..1110 | 917..16 | 4510 | 100 | Minus |
CG1791-RC | 1176 | CG1791-RC | 209..1107 | 917..16 | 4455 | 99.7 | Minus |
CG1791-RB | 1193 | CG1791-RB | 209..1124 | 917..16 | 4360 | 98.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:32:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9963725..9964294 | 159..728 | 2850 | 100 | Plus |
X | 23542271 | X | 9963522..9963666 | 16..160 | 725 | 100 | Plus |
X | 23542271 | X | 9964366..9964480 | 729..843 | 575 | 100 | Plus |
X | 23542271 | X | 9964538..9964584 | 843..889 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:32:40 has no hits.
BS16907.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:35:42 Download gff for
BS16907.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1791-PA | 105..1005 | 17..917 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:43:34 Download gff for
BS16907.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1791-RA | 209..1120 | 9..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:40:09 Download gff for
BS16907.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1791-RA | 209..1120 | 9..917 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:40:09 Download gff for
BS16907.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9963512..9963664 | 9..158 | 97 | <- | Plus |
X | 9963725..9964294 | 159..728 | 100 | <- | Plus |
X | 9964366..9964479 | 729..842 | 100 | <- | Plus |
X | 9964538..9964584 | 843..889 | 100 | <- | Plus |
X | 9964643..9964670 | 890..917 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:43:34 Download gff for
BS16907.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9857545..9857697 | 9..158 | 97 | <- | Plus |
arm_X | 9857758..9858327 | 159..728 | 100 | <- | Plus |
arm_X | 9858399..9858512 | 729..842 | 100 | <- | Plus |
arm_X | 9858571..9858617 | 843..889 | 100 | <- | Plus |
arm_X | 9858676..9858703 | 890..917 | 100 | | Plus |
BS16907.5prime Sequence
859 bp (798 high quality bases) assembled on 2007-05-15
> BS16907.5prime
GAAGTTATCAGTCGACATGGCGCTGGAGGCGCTCGTCACGGCTTTGGCTT
GCCTCAGCACCACCACAAATGCCACGAGTAACTTGCCAGGAAAACACTTT
TCCGTGATAATGAGAAACTCGGCGGAGCCCTTTTTGCTGGCTGAAAATGA
TACCGCCAGTTGTCCAGTAAGCACTTTGGCTGGCTTAGCAGCACGTGTAC
AATTCATGACAGATGAGCTGCAAAATCTCAAAACAGAGCTTAATGAGCTA
CAGGGACTCATTGAGGAGTATAAAAATCAGGGCACCGGAATACCCATTGC
AACCAGGTTACTTCGCCCATTGCCAGCAAGTGTGCAGACCTTTCCGTTGG
CGCTGGCCACGCCCCCCGACGATACGCCCCGAAATTGCTACGATGAGAAG
CATGGTCAGGTGAGGATCCGAATTGCTCCGGATATGGAACCCTTCTTCGC
GAGCTGTGACCAGAAAGTGAGAGATGGTGGCTGGATGGTGATCGCCTATA
GATTCGATGGCAGCGAGGACTTCAACAAGGATTGGCAGAACTATAAGGCC
GGTTTTGGCGCTTTAAACTCGGAGTTCTTTATCGGATTGGATAAGCTGCA
CAGGTTGACCAACAGTGAGCACCACGAGTTGCTCATCATAATGAAGAAGA
AAAGTGGAGAGGAACGTTTCGCGCTGTACGATCACTTCAGTATTGGCAGT
GAATCGGAAAAGTATCTTCTATATGTACTTGGTGCCTACAAAGGTGATGC
TGGTGATTCGCTACGTTACCATGCGGGCAAGAAGTTCACCACATTCGATC
AGGATAACGACGATAATGGCCAAAACTGCGCCAGGACGCATGCAGGTGCC
TGGTGGTAT
BS16907.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:29:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1791-PA | 1005 | CG1791-RA | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:17:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1791-RA | 1179 | CG1791-RA | 105..947 | 17..859 | 4215 | 100 | Plus |
CG1791-RC | 1176 | CG1791-RC | 105..944 | 17..859 | 4160 | 99.6 | Plus |
CG1791-RB | 1193 | CG1791-RB | 105..961 | 17..859 | 4065 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:17:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9963745..9964294 | 859..310 | 2750 | 100 | Minus |
X | 23542271 | X | 9964642..9964774 | 149..17 | 665 | 100 | Minus |
X | 23542271 | X | 9964366..9964480 | 309..195 | 575 | 100 | Minus |
X | 23542271 | X | 9964538..9964584 | 195..149 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:17:13 has no hits.
BS16907.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:29:46 Download gff for
BS16907.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1791-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:18:01 Download gff for
BS16907.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1791-RA | 99..947 | 7..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:33:49 Download gff for
BS16907.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1791-RA | 99..947 | 7..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:33:49 Download gff for
BS16907.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9963745..9964294 | 310..859 | 100 | <- | Minus |
X | 9964366..9964479 | 196..309 | 100 | <- | Minus |
X | 9964538..9964584 | 149..195 | 100 | <- | Minus |
X | 9964643..9964780 | 7..148 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:18:01 Download gff for
BS16907.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9857778..9858327 | 310..859 | 100 | <- | Minus |
arm_X | 9858399..9858512 | 196..309 | 100 | <- | Minus |
arm_X | 9858571..9858617 | 149..195 | 100 | <- | Minus |
arm_X | 9858676..9858813 | 7..148 | 97 | | Minus |
BS16907.complete Sequence
1037 bp assembled on 2007-05-07
GenBank Submission: FJ638880
> BS16907.complete
GAAGTTATCAGTCGACATGGCGCTGGAGGCGCTCGTCACGGCTTTGGCTT
GCCTCAGCACCACCACAAATGCCACGAGTAACTTGCCAGGAAAACACTTT
TCCGTGATAATGAGAAACTCGGCGGAGCCCTTTTTGCTGGCTGAAAATGA
TACCGCCAGTTGTCCAGTAAGCACTTTGGCTGGCTTAGCAGCACGTGTAC
AATTCATGACAGATGAGCTGCAAAATCTCAAAACAGAGCTTAATGAGCTA
CAGGGACTCATTGAGGAGTATAAAAATCAGGGCACCGGAATACCCATTGC
AACCAGGTTACTTCGCCCATTGCCAGCAAGTGTGCAGACCTTTCCGTTGG
CGCTGGCCACGCCCCCCGACGATACGCCCCGAAATTGCTACGATGAGAAG
CATGGTCAGGTGAGGATCCGAATTGCTCCGGATATGGAACCCTTCTTCGC
GAGCTGTGACCAGAAAGTGAGAGATGGTGGCTGGATGGTGATCGCCTATA
GATTCGATGGCAGCGAGGACTTCAACAAGGATTGGCAGAACTATAAGGCC
GGTTTTGGCGCTTTAAACTCGGAGTTCTTTATCGGATTGGATAAGCTGCA
CAGGTTGACCAACAGTGAGCACCACGAGTTGCTCATCATAATGAAGAAGA
AAAGTGGAGAGGAACGTTTCGCGCTGTACGATCACTTCAGTATTGGCAGT
GAATCGGAAAAGTATCTTCTATATGTACTTGGTGCCTACAAAGGTGATGC
TGGTGATTCGCTACGTTACCATGCGGGCAAGAAGTTCACCACATTCGATC
AGGATAACGACGATAATGGCCAAAACTGCGCCAGGACGCATGCAGGTGCC
TGGTGGTATGGAAGGGAGTGCTTCGAGAGCAACTTGTTTGGTACATTCCA
GTCGAAGTACGGACAGGAGATTGGCTATTTCAAGGGCATCCTGTGGAAAT
CCTTCCTGCCAGGACCCACTGGCTCGCTTAGCTATGTCCGCATGCTCATC
CGGCCGCTCAAGAAACAGTAGAAGCTTTCTAGACCAT
BS16907.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:00:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1791-RA | 1005 | CG1791-PA | 1..1005 | 17..1021 | 5025 | 100 | Plus |
CG1791-RC | 1002 | CG1791-PC | 1..1002 | 17..1021 | 4945 | 99.7 | Plus |
CG1791-RB | 588 | CG1791-PB | 1..588 | 434..1021 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:00:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1791-RA | 1179 | CG1791-RA | 105..1110 | 17..1022 | 5030 | 100 | Plus |
CG1791-RC | 1176 | CG1791-RC | 105..1107 | 17..1022 | 4950 | 99.7 | Plus |
CG1791-RB | 1193 | CG1791-RB | 105..1124 | 17..1022 | 4855 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:00:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9963725..9964294 | 879..310 | 2850 | 100 | Minus |
X | 23542271 | X | 9963522..9963666 | 1022..878 | 725 | 100 | Minus |
X | 23542271 | X | 9964642..9964774 | 149..17 | 665 | 100 | Minus |
X | 23542271 | X | 9964366..9964480 | 309..195 | 575 | 100 | Minus |
X | 23542271 | X | 9964538..9964584 | 195..149 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 02:00:37 has no hits.
BS16907.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:36 Download gff for
BS16907.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1791-RA | 1..1005 | 17..1021 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:39 Download gff for
BS16907.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1791-RA | 99..1120 | 7..1029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:14 Download gff for
BS16907.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1791-RA | 105..1109 | 17..1021 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:37 Download gff for
BS16907.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1791-RA | 99..1120 | 7..1029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:35:55 Download gff for
BS16907.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1791-RA | 105..1109 | 17..1021 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:35:55 Download gff for
BS16907.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9963523..9963664 | 880..1021 | 100 | <- | Minus |
X | 9963725..9964294 | 310..879 | 100 | <- | Minus |
X | 9964366..9964479 | 196..309 | 100 | <- | Minus |
X | 9964538..9964584 | 149..195 | 100 | <- | Minus |
X | 9964643..9964774 | 17..148 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:14 Download gff for
BS16907.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9857556..9857697 | 880..1021 | 100 | <- | Minus |
arm_X | 9857758..9858327 | 310..879 | 100 | <- | Minus |
arm_X | 9858399..9858512 | 196..309 | 100 | <- | Minus |
arm_X | 9858571..9858617 | 149..195 | 100 | <- | Minus |
arm_X | 9858676..9858807 | 17..148 | 100 | | Minus |
BS16907.pep Sequence
Translation from 16 to 1020
> BS16907.pep
MALEALVTALACLSTTTNATSNLPGKHFSVIMRNSAEPFLLAENDTASCP
VSTLAGLAARVQFMTDELQNLKTELNELQGLIEEYKNQGTGIPIATRLLR
PLPASVQTFPLALATPPDDTPRNCYDEKHGQVRIRIAPDMEPFFASCDQK
VRDGGWMVIAYRFDGSEDFNKDWQNYKAGFGALNSEFFIGLDKLHRLTNS
EHHELLIIMKKKSGEERFALYDHFSIGSESEKYLLYVLGAYKGDAGDSLR
YHAGKKFTTFDQDNDDNGQNCARTHAGAWWYGRECFESNLFGTFQSKYGQ
EIGYFKGILWKSFLPGPTGSLSYVRMLIRPLKKQ*
BS16907.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1791-PA | 334 | CG1791-PA | 1..334 | 1..334 | 1778 | 100 | Plus |
CG1791-PC | 333 | CG1791-PC | 1..333 | 1..334 | 1762 | 99.7 | Plus |
CG1791-PB | 195 | CG1791-PB | 1..195 | 140..334 | 1069 | 100 | Plus |
CG1889-PD | 338 | CG1889-PD | 5..334 | 1..330 | 774 | 46.4 | Plus |
CG1889-PC | 332 | CG1889-PC | 5..328 | 1..330 | 773 | 47.2 | Plus |